Ss1.1-Tra1-TCH01A100082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACAACATGGACTGTGTCTCCAGGGTCTCAGTGCCCCAGGTCCTGGAAGAGGACGAGGA GCAGGCCAGCACGGAACGGGCCTGTGACACTCTGCTCATGTGCATTGTCACCGTCATGAA CCATGGGCTGCGCAATGGTGGTGGCGTAGGCGACATTCTCCGAAAGCCCTCAAAAGATGA GTCGCTCTTCCCGGCCCGAGTGGTCTACGACCTCCTGTTCTTCTTCATTGTCATCATCAT CGTGCTGAACCTCATCTTTGGGGTGATCATCGACACCTTTGCCGACCTGCGCAGCGAGAA GCAAAAGAAGGAGGAGGTTCTCAAGACTACGTGCTTCATCTGTGGTCTGGAGAGGGACAA GTTCGACAACAAGACGGTGTCCTTTGAGGAACACATCAAGTTTGAGCACAACATGTGGAA CTACCTGTACTTCATCGTGCTGGTCCGCGTGAAGAATAAGACTGACTACACAGGGCCCGA GAGCTACGTGGCCCAGATGATTAAGAACAAGAACCTGGACTGGTTCCCCCGGATGAGGGC CATGTCGCTGGTGAGCAATGAGGGCGAGGGGGAGCAGAATGAGATCCGGATTCTTCAGGA CAAACTCAACTCCACCATGAAGCTGGTGTCCCACCTCACCACCCAGCTCAACGAGCTCAA GGAGCAGATGACAGAGCAGCGGAAACGCAGGCAGCGCCTGGGCTTCGTGGACGTCCAGAA CTGCATGAGCCGCTGAGAGGCCACAGCGTCAAAGGCCCGCAGACCCCGGAGACCCGTGCC TGGGAACTCGGCCCTTCCCTGTGGAGAGGGCCCTGCCAGCCGCCAGCCTCTCCAGGCTGG GTGTCCACCCCACCCCTAGCTCCCACTCTGCCAGAACCCCTCCAAGTCAGCCCAGCCCTG ACTGCCTGGAGGGGGCACCACAGCTGCCAGTCCTGCCCCAGACTGAGCCCGCAGAGCAGA CCTGACGGGGACTCAGCTCACCTACCTGAGCTCACCTGTGTGCCTTACTTGGAGGAGGCG AGTCCCCTTGAAGGAGGGCTGCTTATCCTTTTGCTTTTTAGGGTCACAGGCGTGGCCTAT GGAAGTTCCGAAGGAGGGCTGCTTATCCTTTTGCTTTTTAGGGTCACAGGCGTGGCCTAC GGAAGTTCCCAGGCTAGGGGTCCAATTGGAGCTACAGCTGACAACCTACACCACGCTCAG CTCAGCTCACAGCAATGCCGGATTCCTGGCCCACTGGGTGAGGCCAGGGATTGAACCCGC ATCCTCATGGTTACTAGTCGGTGTTCGTTAACCGCTGAGCTATGGTGGCCACTCCCCTGC TTGAGCTCTAAAGCAGTAACTATATCCCCCTGGTGGGTGATTAGGAGGTGGCCTCCTTAT CCCAAGCACTACATGTTGGCTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACAACATGGACTGTGTCTCCAGGGTCTCAGTGCCCCAGGTCCTGGAAGAGGACGAGGA GCAGGCCAGCACGGAACGGGCCTGTGACACTCTGCTCATGTGCATTGTCACCGTCATGAA CCATGGGCTGCGCAATGGTGGTGGCGTAGGCGACATTCTCCGAAAGCCCTCAAAAGATGA GTCGCTCTTCCCGGCCCGAGTGGTCTACGACCTCCTGTTCTTCTTCATTGTCATCATCAT CGTGCTGAACCTCATCTTTGGGGTGATCATCGACACCTTTGCCGACCTGCGCAGCGAGAA GCAAAAGAAGGAGGAGGTTCTCAAGACTACGTGCTTCATCTGTGGTCTGGAGAGGGACAA GTTCGACAACAAGACGGTGTCCTTTGAGGAACACATCAAGTTTGAGCACAACATGTGGAA CTACCTGTACTTCATCGTGCTGGTCCGCGTGAAGAATAAGACTGACTACACAGGGCCCGA GAGCTACGTGGCCCAGATGATTAAGAACAAGAACCTGGACTGGTTCCCCCGGATGAGGGC CATGTCGCTGGTGAGCAATGAGGGCGAGGGGGAGCAGAATGAGATCCGGATTCTTCAGGA CAAACTCAACTCCACCATGAAGCTGGTGTCCCACCTCACCACCCAGCTCAACGAGCTCAA GGAGCAGATGACAGAGCAGCGGAAACGCAGGCAGCGCCTGGGCTTCGTGGACGTCCAGAA CTGCATGAGCCGCTGAGAGGCCACAGCGTCAAAGGCCCGCAGACCCCGGAGACCCGTGCC TGGGAACTCGGCCCTTCCCTGTGGAGAGGGCCCTGCCAGCCGCCAGCCTCTCCAGGCTGG GTGTCCACCCCACCCCTAGCTCCCACTCTGCCAGAACCCCTCCAAGTCAGCCCAGCCCTG ACTGCCTGGAGGGGGCACCACAGCTGCCAGTCCTGCCCCAGACTGAGCCCGCAGAGCAGA CCTGACGGGGACTCAGCTCACCTACCTGAGCTCACCTGTGTGCCTTACTTGGAGGAGGCG AGTCCCCTTGAAGGAGGGCTGCTTATCCTTTTGCTTTTTAGGGTCACAGGCGTGGCCTAT GGAAGTTCCGAAGGAGGGCTGCTTATCCTTTTGCTTTTTAGGGTCACAGGCGTGGCCTAC GGAAGTTCCCAGGCTAGGGGTCCAATTGGAGCTACAGCTGACAACCTACACCACGCTCAG CTCAGCTCACAGCAATGCCGGATTCCTGGCCCACTGGGTGAGGCCAGGGATTGAACCCGC ATCCTCATGGTTACTAGTCGGTGTTCGTTAACCGCTGAGCTATGGTGGCCACTCCCCTGC TTGAGCTCTAAAGCAGTAACTATATCCCCCTGGTGGGTGATTAGGAGGTGGCCTCCTTAT CCCAAGCACTACATGTTGGCTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 551-670, - strand, RNAz p=0.91135 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 551-670, - strand, RNAz p=0.91135 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 179-346, gnl|bosTau2|chr22 (17023573-17023740) | |
| 179-346, gnl|Hg17|chr3 (4831737-4831904) | |
| 179-346, gnl|Mm7|chr6 (108613323-108613490) | |
| 501-670, gnl|bosTau2|chr23 (6200590-6200759) | |
| 501-670, gnl|Hg17|chr6 (33770674-33770843) | |
| 501-670, gnl|Mm7|chr17 (25306557-25306726) | |
| 512-667, gnl|bosTau2|chr22 (17046104-17046259) | |
| 512-667, gnl|canFam2|chr20 (15757787-15757598) | |
| 512-667, gnl|danRer3|chr6 (20295752-20295587) | |
| 512-667, gnl|dasNov1|scaffold_7026 (89719-89891) | |
| 512-667, gnl|echTel1|scaffold_320874 (65899-66083) | |
| 512-667, gnl|fr1|chrUn (146469579-146469744) | |
| 512-667, gnl|galGal2|chr12 (18472678-18472855) | |
| 512-667, gnl|hg17|chr3 (4853437-4853626) | |
| 512-667, gnl|Hg17|chr3 (4853464-4853619) | |
| 512-667, gnl|loxAfr1|scaffold_1409 (39154-39345) | |
| 512-667, gnl|mm7|chr6 (108635930-108636109) | |
| 512-667, gnl|Mm7|chr6 (108635947-108636102) | |
| 512-667, gnl|monDom2|scaffold_5 (30553730-30553919) | |
| 512-667, gnl|oryCun1|scaffold_206095 (112340-112525) | |
| 512-667, gnl|panTro1|chr2 (4973029-4973217) | |
| 512-667, gnl|rheMac2|chr2 (56190889-56190706) | |
| 512-667, gnl|rn3|chr4 (144265680-144265859) | |
| 512-667, gnl|tetNig1|chr11 (9479622-9479453) | |
| 512-667, gnl|xenTro1|scaffold_173 (1806111-1806301) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-346, gnl|bosTau2|chr22 (17023573-17023740) | |
| 179-346, gnl|Hg17|chr3 (4831737-4831904) | |
| 179-346, gnl|Mm7|chr6 (108613323-108613490) | |
| 501-670, gnl|bosTau2|chr23 (6200590-6200759) | |
| 501-670, gnl|Hg17|chr6 (33770674-33770843) | |
| 501-670, gnl|Mm7|chr17 (25306557-25306726) | |
| 512-667, gnl|bosTau2|chr22 (17046104-17046259) | |
| 512-667, gnl|canFam2|chr20 (15757787-15757598) | |
| 512-667, gnl|danRer3|chr6 (20295752-20295587) | |
| 512-667, gnl|dasNov1|scaffold_7026 (89719-89891) | |
| 512-667, gnl|echTel1|scaffold_320874 (65899-66083) | |
| 512-667, gnl|fr1|chrUn (146469579-146469744) | |
| 512-667, gnl|galGal2|chr12 (18472678-18472855) | |
| 512-667, gnl|hg17|chr3 (4853437-4853626) | |
| 512-667, gnl|Hg17|chr3 (4853464-4853619) | |
| 512-667, gnl|loxAfr1|scaffold_1409 (39154-39345) | |
| 512-667, gnl|mm7|chr6 (108635930-108636109) | |
| 512-667, gnl|Mm7|chr6 (108635947-108636102) | |
| 512-667, gnl|monDom2|scaffold_5 (30553730-30553919) | |
| 512-667, gnl|oryCun1|scaffold_206095 (112340-112525) | |
| 512-667, gnl|panTro1|chr2 (4973029-4973217) | |
| 512-667, gnl|rheMac2|chr2 (56190889-56190706) | |
| 512-667, gnl|rn3|chr4 (144265680-144265859) | |
| 512-667, gnl|tetNig1|chr11 (9479622-9479453) | |
| 512-667, gnl|xenTro1|scaffold_173 (1806111-1806301) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| ton (0.1755) |