Non-Coding RNA Search

Ss1.1-Tra1-TCH01A100096.5

Sequence:


               
               CGAGCCGGGCTGCGCACCATGTCCGGGCTGCTGGCGCTGCTGGGCCCCGCGGGCAGGGGG
TGCGCCCGGGTTCGGCCTCGCGCCACCTGGTTCCTGGGCGCCGCCGCCCCCTGCGCCCCG
CCGCCTGTGTTCCTGCCGCTGCTCCGGCCCGGGCCAGACGCTCAGCTGCTGCGCGCAGCC
CGCAGGAACTGCCACGGCCGCCAGGAACCCAGCAGAATCACAGCGGCAGCAGGCGGCGAC
ATCAGCGGTACAGAGGAGAAAAAGCAAAGCAAGTCGCAGCAGCTGAAAAAGATCTTCAAG
GAGTATGGCGCCGTGGGCGTGTCCGTGCACGTTGGGATCTCGCTCGTCTCCTTGGGCATG
TTTTACATGGTTGTTTCAAGTGGTCTGGACATATCAGCCATCCTGCTTAAACTCGGATTT
AAAGAGTCCCTGGTACAGTCAAAAATGGCAGCGGGCACCAGTACCTTCGTGGTGGCTTAC
GCCATCCACAAGCTGTTCGCACCCGTGAGAATCAGTATAACTTTAGTTTCCGTGCCCTTC
ATTGTCAGGTATTTTCGGAAAGTGGGACTTTTTAAACCTCCAGCTGCAAAGCCTTGAACT
CTTTGACTGAGGGCCTGAAAACCTATTTCTTTTCACTGACACATTTTGGCTTTGGTTTTA
GGATGTAGGTTTTTCTGTGGGCAGGGAGGGGGGTGCTAACTGCTGAGCTCTCGTGGATAG
GAGTTACTTTTGCCAGCAAAAATCCAGAGTTTTGAATCACTGTAAATTTCTTTTGCTTTA
TAAACTGTGACAGTGCTATTCACTGAAGGGCTTGTCTGCATCATCTGTCAACAAAACATC
ACCCGAAAGTTGTCATCTCAGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCCGGGCTGCGCACCATGTCCGGGCTGCTGGCGCTGCTGGGCCCCGCGGGCAGGGGG
TGCGCCCGGGTTCGGCCTCGCGCCACCTGGTTCCTGGGCGCCGCCGCCCCCTGCGCCCCG
CCGCCTGTGTTCCTGCCGCTGCTCCGGCCCGGGCCAGACGCTCAGCTGCTGCGCGCAGCC
CGCAGGAACTGCCACGGCCGCCAGGAACCCAGCAGAATCACAGCGGCAGCAGGCGGCGAC
ATCAGCGGTACAGAGGAGAAAAAGCAAAGCAAGTCGCAGCAGCTGAAAAAGATCTTCAAG
GAGTATGGCGCCGTGGGCGTGTCCGTGCACGTTGGGATCTCGCTCGTCTCCTTGGGCATG
TTTTACATGGTTGTTTCAAGTGGTCTGGACATATCAGCCATCCTGCTTAAACTCGGATTT
AAAGAGTCCCTGGTACAGTCAAAAATGGCAGCGGGCACCAGTACCTTCGTGGTGGCTTAC
GCCATCCACAAGCTGTTCGCACCCGTGAGAATCAGTATAACTTTAGTTTCCGTGCCCTTC
ATTGTCAGGTATTTTCGGAAAGTGGGACTTTTTAAACCTCCAGCTGCAAAGCCTTGAACT
CTTTGACTGAGGGCCTGAAAACCTATTTCTTTTCACTGACACATTTTGGCTTTGGTTTTA
GGATGTAGGTTTTTCTGTGGGCAGGGAGGGGGGTGCTAACTGCTGAGCTCTCGTGGATAG
GAGTTACTTTTGCCAGCAAAAATCCAGAGTTTTGAATCACTGTAAATTTCTTTTGCTTTA
TAAACTGTGACAGTGCTATTCACTGAAGGGCTTGTCTGCATCATCTGTCAACAAAACATC
ACCCGAAAGTTGTCATCTCAGACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55653050|ref|XP_525363.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55653050|ref|XP_525363.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               185-864, gnl|bosTau2|chr13 (56468675-56469379)
               

               
               185-864, gnl|Hg17|chr10 (27679060-27678381)
               

               
               185-864, gnl|Mm7|chr2 (172144106-172145810)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-864, gnl|bosTau2|chr13 (56468675-56469379)
               

               
               185-864, gnl|Hg17|chr10 (27679060-27678381)
               

               
               185-864, gnl|Mm7|chr2 (172144106-172145810)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               hea (0.408998)
               

               
               duo (0.345602)
               

               
               cje (0.330469)
               

               
               ova (0.258264)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               duo (0.345602)
               

               
               cje (0.330469)
               

               
               ova (0.258264)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	185-864, gnl\|bosTau2\|chr13 (56468675-56469379)
	185-864, gnl\|Hg17\|chr10 (27679060-27678381)
	185-864, gnl\|Mm7\|chr2 (172144106-172145810)

	hea (0.408998)
	duo (0.345602)
	cje (0.330469)
	ova (0.258264)
	col (0.195008)
	cmu (0.186393)
	sin (0.174948)
	cut (0.169924)
	cki (0.165235)
	tbr (0.154178)
	pty (0.142714)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)