Non-Coding RNA Search

Ss1.1-Tra1-TCH01A110002.5.5

Sequence:


               
               CGTTCTCGGCGCGTAACGCGCGGTGCCCGCGGCTGGAGGTCAGGCAGCTGCGTGGCTCCG
AGCAGGTCCCTTTCAGCGGCCCTGGAGTAGCCTTGTCTGATTACCAGTAACGACAAGAAG
AAAAAAGAAAGAACAAAACCCGATTGCTTTGCCCTGGGAAGTAGTAATCCTGACCAATAC
ACCTGCTTGCAAGAGACAGAGGAGATGTGATGGAGCTGCTGGAAGAAGATCTCACGTGCC
CAATCTGTTGCAGTCTGTTTGATGATCCTCGAGTTTTGCCTTGTTCACACAACTTCTGCA
AAAAATGCTTAGAAGGGCTCTTAGAGGGGAATGTGCGGAATTCACTGTGGAGATCGTCTC
CATTCAAGTGCCCCACATGCCGTAAGGAAACTTCAGCTACCGGAGTCAATAGCCTACAGG
TTAATTACTCCCTCAAAGGTATCGTGGAAAAGTATAACAAGATCAAGATCTCTCCCAAAA
TGCCAGTGTGCAAAGGACACTTGGGGCAGCCTCTCAACATTTTCTGCCTGACTGACATGC
AGCTCATTTGTGGGATCTGTGCTACTCGTGGTGACCACACCAAGCATGTCTTCTGTTCTA
TTGAAGATGCCTATGCTCAGGAAAGGAATGCCTTTGAGTCCCTCTTCCAGAGCTTTGAGA
CCTGGCGTCGGGGAGATGCTCTTTCTCGCTTGGATACCTTGGAGACTAGCAAAAGGAAAT
CTCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGAGTTTTTTGAGAAGTTACAAC
ACACATTAGATCAAAAGAAGAATGAAATCCTGTCTGACTTTGAGACCATGAAACTTGCAG
TTATGCAAGCCTATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAACAGCGAA
TGGCATTTAACATTGCTGAGGCTTTCAAAGATGTATCAGAACCCATCGTATTTCTGCAAC
AGATGCAGGAGTTCCGGGAGAAAATAAAAGTAATCAAGGAAACTCCTTTGCCTCCCTCTA
ATTTGCCCACAAGCCCTTTAATGAAGAACTTTGATACCAGTCAATGGGAAGACATAAAAC
TAGTAGATGTGGATAAACTTTCTTTGCCTCAAGATACTGGCACATTCATTAGCAAGATTC
CTTGGGGCTTTTATCAGTTATTTGTGGTAGTCATTCTTCTTGGCCTTCTCATTTTCTTTA
GTCCTACCATATTCCTCGAATGGTCTTTATTTGATGAAATCACAACTTGGAAAGACAGTC
TTTCAAACTTTAGTTCTTATCTGACTAAATCAGCTGATTTTGTAGAACAATCAGTTTTTT
ACTGGGAACAGTTGACAGATGGGTTTTTCATTTTCAGTGAAAGACTGAAGAATTTTACTT
TGGTGGTGCTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAAAATCTGT
TTCAAGGACATAGTTCTGTGTCTTTTGTTAGAAATTTGATAGAATACAGAGTGGTAGAGT
TCAGATGTGGTCAAGATTCTAGGGAGATATCTTCCTCCAAAAGTATACCTTTCAAAAATA
ATGTCTTATACATGTCTTTGAAATTAGGTAGCATAAAGATAAAAGTGAAATTTAATAGTG
TAGGCCCAAACCTTCCTTCCTTTTTAGAGTGCTTTTGAAATAAGCATCCTGTCCCCAATA
TTGGTTGTGTTTTTGTTATGAAAAAAGGGGAGGTGAGAGCACACGATTTAGTATTGTACT
GATGAGGTAGTATAATAATGATTGTTCTTAAGCATGTAATAAAGACTACTCTTGTAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTCTCGGCGCGTAACGCGCGGTGCCCGCGGCTGGAGGTCAGGCAGCTGCGTGGCTCCG
AGCAGGTCCCTTTCAGCGGCCCTGGAGTAGCCTTGTCTGATTACCAGTAACGACAAGAAG
AAAAAAGAAAGAACAAAACCCGATTGCTTTGCCCTGGGAAGTAGTAATCCTGACCAATAC
ACCTGCTTGCAAGAGACAGAGGAGATGTGATGGAGCTGCTGGAAGAAGATCTCACGTGCC
CAATCTGTTGCAGTCTGTTTGATGATCCTCGAGTTTTGCCTTGTTCACACAACTTCTGCA
AAAAATGCTTAGAAGGGCTCTTAGAGGGGAATGTGCGGAATTCACTGTGGAGATCGTCTC
CATTCAAGTGCCCCACATGCCGTAAGGAAACTTCAGCTACCGGAGTCAATAGCCTACAGG
TTAATTACTCCCTCAAAGGTATCGTGGAAAAGTATAACAAGATCAAGATCTCTCCCAAAA
TGCCAGTGTGCAAAGGACACTTGGGGCAGCCTCTCAACATTTTCTGCCTGACTGACATGC
AGCTCATTTGTGGGATCTGTGCTACTCGTGGTGACCACACCAAGCATGTCTTCTGTTCTA
TTGAAGATGCCTATGCTCAGGAAAGGAATGCCTTTGAGTCCCTCTTCCAGAGCTTTGAGA
CCTGGCGTCGGGGAGATGCTCTTTCTCGCTTGGATACCTTGGAGACTAGCAAAAGGAAAT
CTCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGAGTTTTTTGAGAAGTTACAAC
ACACATTAGATCAAAAGAAGAATGAAATCCTGTCTGACTTTGAGACCATGAAACTTGCAG
TTATGCAAGCCTATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAACAGCGAA
TGGCATTTAACATTGCTGAGGCTTTCAAAGATGTATCAGAACCCATCGTATTTCTGCAAC
AGATGCAGGAGTTCCGGGAGAAAATAAAAGTAATCAAGGAAACTCCTTTGCCTCCCTCTA
ATTTGCCCACAAGCCCTTTAATGAAGAACTTTGATACCAGTCAATGGGAAGACATAAAAC
TAGTAGATGTGGATAAACTTTCTTTGCCTCAAGATACTGGCACATTCATTAGCAAGATTC
CTTGGGGCTTTTATCAGTTATTTGTGGTAGTCATTCTTCTTGGCCTTCTCATTTTCTTTA
GTCCTACCATATTCCTCGAATGGTCTTTATTTGATGAAATCACAACTTGGAAAGACAGTC
TTTCAAACTTTAGTTCTTATCTGACTAAATCAGCTGATTTTGTAGAACAATCAGTTTTTT
ACTGGGAACAGTTGACAGATGGGTTTTTCATTTTCAGTGAAAGACTGAAGAATTTTACTT
TGGTGGTGCTGAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAAAATCTGT
TTCAAGGACATAGTTCTGTGTCTTTTGTTAGAAATTTGATAGAATACAGAGTGGTAGAGT
TCAGATGTGGTCAAGATTCTAGGGAGATATCTTCCTCCAAAAGTATACCTTTCAAAAATA
ATGTCTTATACATGTCTTTGAAATTAGGTAGCATAAAGATAAAAGTGAAATTTAATAGTG
TAGGCCCAAACCTTCCTTCCTTTTTAGAGTGCTTTTGAAATAAGCATCCTGTCCCCAATA
TTGGTTGTGTTTTTGTTATGAAAAAAGGGGAGGTGAGAGCACACGATTTAGTATTGTACT
GATGAGGTAGTATAATAATGATTGTTCTTAAGCATGTAATAAAGACTACTCTTGTAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661782|emb|CAH72826.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661782|emb|CAH72826.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               319-478, - strand, RNAz p=0.628243
               

               
               919-1038, - strand, RNAz p=0.57979

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-478, - strand, RNAz p=0.628243
               

               
               919-1038, - strand, RNAz p=0.57979

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               200-1798, gnl|bosTau2|chr12 (8298863-8300451)
               

               
               200-1798, gnl|Hg17|chr13 (49484070-49485661)
               

               
               200-1798, gnl|Mm7|chr14 (56471770-56473345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-1798, gnl|bosTau2|chr12 (8298863-8300451)
               

               
               200-1798, gnl|Hg17|chr13 (49484070-49485661)
               

               
               200-1798, gnl|Mm7|chr14 (56471770-56473345)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ecc (0.345105)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               ssp (0.13552)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               ssp (0.13552)

	319-478, - strand, RNAz p=0.628243
	919-1038, - strand, RNAz p=0.57979

	200-1798, gnl\|bosTau2\|chr12 (8298863-8300451)
	200-1798, gnl\|Hg17\|chr13 (49484070-49485661)
	200-1798, gnl\|Mm7\|chr14 (56471770-56473345)

	ecc (0.345105)
	cte (0.29274)
	fce (0.271592)
	tes (0.207814)
	aor (0.195274)
	nlu (0.191681)
	ssp (0.13552)