Non-Coding RNA Search

Ss1.1-Tra1-TCH01A110014.5

Sequence:


               
               AAAAAAAGAGAACCACCGTGGAGGCCCGTAGCCAGAGCCGGTCCCTTTTAACCCAAGTAG
GGAAGGGGAATGAGACTAAGAAGTGAATTTCTTGACAGTCGCAGGCCAGAAAGAGGCAGA
GGGACGTCAGTGCCTCTTCCTGGGAGGCGGCCCCCTCCGTAGGCTGCACAGGAGTTCGCT
GAGGGGCCGGCGAGGAAAGGTGTGGGACAGAGGTGGAGGCATGTATTCCACCTTTCGCTT
TAGCAGTATCTGAAGTCACGGCGAGACTAAGGGCTTCCATTCAGTCCCGTGTATTGCAAG
AATCCATGAATTATCTGAATCATTTCGCCACTTAATCAACCCTACAGTTGTTTCACGTGT
ATCTTGTTTGCTTGGTTAAACCCTACACTATTTGAGAACCAAAGCTGTGCTATTGCTCTA
GCACCAGTCTCAGGGCCACGGGTCCCTCTTCCAGAGTCTCCTACCTTCAGTACCTCTTGC
CAGGAACACATTCCTCTCCTGCCCAGTCACTCTCCAAGGAGATTCTGTCCCCTAAATATC
TCTGGAAGCCATCTTTTCTCCAAGCTGTCATCACCGCTTGTCCAGACTGCTGCTTCCTCG
CCAGGTCTCCCATCTCCCTTCCTGTCCTCCACACACAGCCGCGTGAGCTCTGAAAAACAA
ACCTAAACACCTGACTTTCCTCATTCAGATTCTTCAGTGGCTTCCCGTTGCTTTTGGAAT
AAAGTCCTAAATTCAAAGAGCTTGCATAAGTCAGCCTGTACCATGCATCGACCCTCTTGG
TTCCCTAAGTTCCAGTCACATTGGCTGGCTTTCCGTCTTCCTGCCGCAAAGCCAGCACAC
GGACTGTTCTCTCCGCTTGTAACACTCCCATTTTCCACCTTTTAATCCTAAATGTTTCTT
CCTCGGGGAGACCTTTTCTGATTTTGTGATGTAGGTCAAGACTTTTAGTTAAATCTTCTC
TTAGCACCATGCCTGTTTCATAGCACTTATTACAATCATAATGTTTACAGTAGAGACGTA
ATTGGCTGGCAGGCTGCTAGATTGTAAGCTCATGAGGGCAGAAATCACGTCCATCTTGTT
CACTGCTGTATTCCCAGTGTCGGGCACACAGTTGTTGCTCAATAAATTTTGACTTAATGA
ACTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAGAGAACCACCGTGGAGGCCCGTAGCCAGAGCCGGTCCCTTTTAACCCAAGTAG
GGAAGGGGAATGAGACTAAGAAGTGAATTTCTTGACAGTCGCAGGCCAGAAAGAGGCAGA
GGGACGTCAGTGCCTCTTCCTGGGAGGCGGCCCCCTCCGTAGGCTGCACAGGAGTTCGCT
GAGGGGCCGGCGAGGAAAGGTGTGGGACAGAGGTGGAGGCATGTATTCCACCTTTCGCTT
TAGCAGTATCTGAAGTCACGGCGAGACTAAGGGCTTCCATTCAGTCCCGTGTATTGCAAG
AATCCATGAATTATCTGAATCATTTCGCCACTTAATCAACCCTACAGTTGTTTCACGTGT
ATCTTGTTTGCTTGGTTAAACCCTACACTATTTGAGAACCAAAGCTGTGCTATTGCTCTA
GCACCAGTCTCAGGGCCACGGGTCCCTCTTCCAGAGTCTCCTACCTTCAGTACCTCTTGC
CAGGAACACATTCCTCTCCTGCCCAGTCACTCTCCAAGGAGATTCTGTCCCCTAAATATC
TCTGGAAGCCATCTTTTCTCCAAGCTGTCATCACCGCTTGTCCAGACTGCTGCTTCCTCG
CCAGGTCTCCCATCTCCCTTCCTGTCCTCCACACACAGCCGCGTGAGCTCTGAAAAACAA
ACCTAAACACCTGACTTTCCTCATTCAGATTCTTCAGTGGCTTCCCGTTGCTTTTGGAAT
AAAGTCCTAAATTCAAAGAGCTTGCATAAGTCAGCCTGTACCATGCATCGACCCTCTTGG
TTCCCTAAGTTCCAGTCACATTGGCTGGCTTTCCGTCTTCCTGCCGCAAAGCCAGCACAC
GGACTGTTCTCTCCGCTTGTAACACTCCCATTTTCCACCTTTTAATCCTAAATGTTTCTT
CCTCGGGGAGACCTTTTCTGATTTTGTGATGTAGGTCAAGACTTTTAGTTAAATCTTCTC
TTAGCACCATGCCTGTTTCATAGCACTTATTACAATCATAATGTTTACAGTAGAGACGTA
ATTGGCTGGCAGGCTGCTAGATTGTAAGCTCATGAGGGCAGAAATCACGTCCATCTTGTT
CACTGCTGTATTCCCAGTGTCGGGCACACAGTTGTTGCTCAATAAATTTTGACTTAATGA
ACTCAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               626-1132, gnl|bosTau2|chr10 (10393261-10392745)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               626-1132, gnl|bosTau2|chr10 (10393261-10392745)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               pan (0.23596)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)

	pan (0.23596)
	fcc (0.197785)
	nep (0.183925)
	eli (0.151814)
	lnt (0.142308)