Non-Coding RNA Search

Ss1.1-Tra1-TCH01A110017.5

Sequence:


               
               CTCAAATACTCTTAATGCTGCATTTCAAAACTAGAAATTATAACCTGGGTGGAACTCAAT
TTAACAAAAAAGGAATTCTGATTATTGAGGGTTCCATCATTACCAGAAGGTATCAGCCAA
AATCTGAGTTTGTAGCAATTGTTGTTGTTGTTGTTTTCCCAGTTGGGAGAGGGGCTCACC
AAATTTATGGGGAAGAAATCTATTGTGCAACAAAACCCCCAAAATCTTATTTTTCCAAAA
CCATTGATTGACTAAGCTGACCTTTTGAGAGTTGATGGGACAAGTAAAAGAGACTGCAGT
GGTGGTGAGTCACTGTCGCGTGGAAAACAAAAAACTCACCTAGTTGTCCATTTAATCAGT
AGACTAGATCAGTCAAATCTTCAGTGGAAACATGAGCAAACAAACCTTTCTGAGCTGGTT
TCTTATACACATCCGGCTTCTTTAACAGGTGTTTCCCGTGCTTTCAGCTCCATTTTTACT
TTGTCTTGAATATGCTACCCAGCGTTCTTGGGTACTGAAGTTTGCCTTCCAGGGATGTCG
AGTGTACATATGTGTGTATGTGTCCCATGTTACGTGTCAACAAACTTCGATTTGAAGTGC
AGCCATTATGTGGTATCCATGTGTACTGACCCTGTGCCATAGATCCATATGGTCACTGGA
AAGTCATTTTATGATGCTTATTATTATACTGTTTTTCATTTCACCTGTAAAATTTTGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAATACTCTTAATGCTGCATTTCAAAACTAGAAATTATAACCTGGGTGGAACTCAAT
TTAACAAAAAAGGAATTCTGATTATTGAGGGTTCCATCATTACCAGAAGGTATCAGCCAA
AATCTGAGTTTGTAGCAATTGTTGTTGTTGTTGTTTTCCCAGTTGGGAGAGGGGCTCACC
AAATTTATGGGGAAGAAATCTATTGTGCAACAAAACCCCCAAAATCTTATTTTTCCAAAA
CCATTGATTGACTAAGCTGACCTTTTGAGAGTTGATGGGACAAGTAAAAGAGACTGCAGT
GGTGGTGAGTCACTGTCGCGTGGAAAACAAAAAACTCACCTAGTTGTCCATTTAATCAGT
AGACTAGATCAGTCAAATCTTCAGTGGAAACATGAGCAAACAAACCTTTCTGAGCTGGTT
TCTTATACACATCCGGCTTCTTTAACAGGTGTTTCCCGTGCTTTCAGCTCCATTTTTACT
TTGTCTTGAATATGCTACCCAGCGTTCTTGGGTACTGAAGTTTGCCTTCCAGGGATGTCG
AGTGTACATATGTGTGTATGTGTCCCATGTTACGTGTCAACAAACTTCGATTTGAAGTGC
AGCCATTATGTGGTATCCATGTGTACTGACCCTGTGCCATAGATCCATATGGTCACTGGA
AAGTCATTTTATGATGCTTATTATTATACTGTTTTTCATTTCACCTGTAAAATTTTGCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               586-703, + strand, RNAz p=0.608701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               586-703, + strand, RNAz p=0.608701

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000297, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000297, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-304, gnl|bosTau2|chr6 (15400181-15400474)
               

               
               1-304, gnl|canFam2|chr32 (14396930-14397160)
               

               
               1-304, gnl|echTel1|scaffold_231933 (7156-7373)
               

               
               1-304, gnl|hg17|chr4 (89355166-89355392)
               

               
               1-304, gnl|Hg17|chr4 (89355182-89355453)
               

               
               1-304, gnl|loxAfr1|scaffold_110844 (4086-4320)
               

               
               1-304, gnl|mm7|chr5 (103695390-103695565)
               

               
               1-304, gnl|Mm7|chr5 (103695389-103695786)
               

               
               1-304, gnl|oryCun1|scaffold_174384 (43617-43394)
               

               
               1-304, gnl|panTro1|chr3_random (1488275-1488501)
               

               
               1-304, gnl|rheMac2|chr5 (81043562-81043784)
               

               
               1-304, gnl|rn3|chr14 (6350594-6350395)
               


               
               336-718, gnl|bosTau2|chr6 (15400532-15400937)
               

               
               336-718, gnl|Hg17|chr4 (89355511-89355898)
               

               
               336-718, gnl|Mm7|chr5 (103695848-103696247)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-304, gnl|bosTau2|chr6 (15400181-15400474)
               

               
               1-304, gnl|canFam2|chr32 (14396930-14397160)
               

               
               1-304, gnl|echTel1|scaffold_231933 (7156-7373)
               

               
               1-304, gnl|hg17|chr4 (89355166-89355392)
               

               
               1-304, gnl|Hg17|chr4 (89355182-89355453)
               

               
               1-304, gnl|loxAfr1|scaffold_110844 (4086-4320)
               

               
               1-304, gnl|mm7|chr5 (103695390-103695565)
               

               
               1-304, gnl|Mm7|chr5 (103695389-103695786)
               

               
               1-304, gnl|oryCun1|scaffold_174384 (43617-43394)
               

               
               1-304, gnl|panTro1|chr3_random (1488275-1488501)
               

               
               1-304, gnl|rheMac2|chr5 (81043562-81043784)
               

               
               1-304, gnl|rn3|chr14 (6350594-6350395)
               


               
               336-718, gnl|bosTau2|chr6 (15400532-15400937)
               

               
               336-718, gnl|Hg17|chr4 (89355511-89355898)
               

               
               336-718, gnl|Mm7|chr5 (103695848-103696247)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               kid (0.389206)
               

               
               bla (0.248694)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               bla (0.248694)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	1-304, gnl\|bosTau2\|chr6 (15400181-15400474)
	1-304, gnl\|canFam2\|chr32 (14396930-14397160)
	1-304, gnl\|echTel1\|scaffold_231933 (7156-7373)
	1-304, gnl\|hg17\|chr4 (89355166-89355392)
	1-304, gnl\|Hg17\|chr4 (89355182-89355453)
	1-304, gnl\|loxAfr1\|scaffold_110844 (4086-4320)
	1-304, gnl\|mm7\|chr5 (103695390-103695565)
	1-304, gnl\|Mm7\|chr5 (103695389-103695786)
	1-304, gnl\|oryCun1\|scaffold_174384 (43617-43394)
	1-304, gnl\|panTro1\|chr3_random (1488275-1488501)
	1-304, gnl\|rheMac2\|chr5 (81043562-81043784)
	1-304, gnl\|rn3\|chr14 (6350594-6350395)

	336-718, gnl\|bosTau2\|chr6 (15400532-15400937)
	336-718, gnl\|Hg17\|chr4 (89355511-89355898)
	336-718, gnl\|Mm7\|chr5 (103695848-103696247)

	kid (0.389206)
	bla (0.248694)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	ski (0.146735)
	pty (0.142714)
	ova (0.129132)
	sug (0.127291)