Non-Coding RNA Search

Ss1.1-Tra1-TCH01A110020.5

Sequence:


               
               TGGGTGAATACTGACGGCTACCACACAGAGGCCCCAACAAGGCACCGAGAGAGACCCTGA
ACACTGCCGACGGATATAAAAATGGACAATTTCACGACCCCCTCGCAAGCTCCTCAGGAA
AGTGACTGTGACCTCTACGCCCACCATGACACAGCCAGGATCCTCATGCCTCTGCATTAC
AGCATCGTCTTCATAATCGGGCTCCTGGGAAACTTGTTGGCCCTGATTGTCATTATTCAA
AACAGGAAAAAAATCAACTCTACCACTCTATATTCAACCAACTTGGTGATTTCGGATATA
CTGTTTACCACTGCTCTGCCTACACGGATAGCCTACTATGCGCTGGGCTTTGACTGGAGA
ATTGGCGAGGCCTTGTGCAGGATAACTGCTCTCGTGTTTTATATCAACACATACGCAGGC
GTGAACTTCATGACCTGCCTGAGTATTGACCGGTTCTTTGCTGTGGTGCACCCCCTGCGG
TACAACAAGATAAAAAGAATTGAACATGCAAAGTGCATCTGCATATGCGTCTGGATTCTT
GTATTTGCTCAAACACTCCCTCTGCTCATAAAACCCATGTCAAAGCAGGAGGCTAAAAGG
ACTACGTGCATGGAGTATCCAAACTTTGAGGAAACACAATCCCTCCCCTGGATTCTGCTT
GGGGCCTGTTTCATAGGGTATGTACTTCCGCTCTTAATCATCCTCATCTGCTACTCTCAG
ATCTGCTGCAAACTCTTCAAAACGGCCAAACAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGAATACTGACGGCTACCACACAGAGGCCCCAACAAGGCACCGAGAGAGACCCTGA
ACACTGCCGACGGATATAAAAATGGACAATTTCACGACCCCCTCGCAAGCTCCTCAGGAA
AGTGACTGTGACCTCTACGCCCACCATGACACAGCCAGGATCCTCATGCCTCTGCATTAC
AGCATCGTCTTCATAATCGGGCTCCTGGGAAACTTGTTGGCCCTGATTGTCATTATTCAA
AACAGGAAAAAAATCAACTCTACCACTCTATATTCAACCAACTTGGTGATTTCGGATATA
CTGTTTACCACTGCTCTGCCTACACGGATAGCCTACTATGCGCTGGGCTTTGACTGGAGA
ATTGGCGAGGCCTTGTGCAGGATAACTGCTCTCGTGTTTTATATCAACACATACGCAGGC
GTGAACTTCATGACCTGCCTGAGTATTGACCGGTTCTTTGCTGTGGTGCACCCCCTGCGG
TACAACAAGATAAAAAGAATTGAACATGCAAAGTGCATCTGCATATGCGTCTGGATTCTT
GTATTTGCTCAAACACTCCCTCTGCTCATAAAACCCATGTCAAAGCAGGAGGCTAAAAGG
ACTACGTGCATGGAGTATCCAAACTTTGAGGAAACACAATCCCTCCCCTGGATTCTGCTT
GGGGCCTGTTTCATAGGGTATGTACTTCCGCTCTTAATCATCCTCATCTGCTACTCTCAG
ATCTGCTGCAAACTCTTCAAAACGGCCAAACAAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864237|ref|XP_592941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864237|ref|XP_592941.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               527-646, - strand, RNAz p=0.791001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               527-646, - strand, RNAz p=0.791001

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-756, gnl|bosTau2|chr12 (39900791-39900085)
               

               
               50-756, gnl|Hg17|chr13 (98746420-98745711)
               

               
               50-756, gnl|Mm7|chr14 (116359773-116359070)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-756, gnl|bosTau2|chr12 (39900791-39900085)
               

               
               50-756, gnl|Hg17|chr13 (98746420-98745711)
               

               
               50-756, gnl|Mm7|chr14 (116359773-116359070)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cbl (0.114797)

	50-756, gnl\|bosTau2\|chr12 (39900791-39900085)
	50-756, gnl\|Hg17\|chr13 (98746420-98745711)
	50-756, gnl\|Mm7\|chr14 (116359773-116359070)