Ss1.1-Tra1-TCH01A110027.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGGCGCCGGAGGTGCTGGAGTCGGACCTGCCAAATGCTGTGGCACTTTTGAAAAACC TTCAGGAACAGGTGATAGCTGTCACTGCACAAGTGCAAGCCCTGACCAAAAAAGTTCAAG CTAAGGCCTTTCCTACAGAAAAGGGTCTCAGCCTTTTGGAAGTGAAAGATCAGCTGTTGC TCATGTACCTTATGGATTTGAGCCATCTCATCCTACACAAAGCCTCAGGAGGGTCTCTTC AGGGACATGCTGCAGTTTTGAGACTGGTGGAGATTCGCACGGTTTTGGAAAAGCTTCGTC CTTTGGACCAAAAACTGAAGTATCAAATTGACAAACTGGTCAAGACTGCAGTGACAGGCA GCCTCAGTGAGAATGACCCACTCCGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGT TGAACTCTGAGGATGAAGAGGAAGATGAAGCAGAGGAAGGCCAGTCTGGGGCTTCAGGGA AGAAATCTGGAAAAGCGATAGCTAAGAAATATGTTCCCCCACGCTTGGTTCCAGTGCATT ATGATGAAACAGAAGCTGAGCGGGAGAAGAAGCGCCTAGAACGAGCCAAGAGACGGGCAT TGAGCAGCTCTGTCATTCGTGAACTAAAGGAGCAGTACTCAGATGCCCCAGAGGAAATTC GTGATGCTCGACATCCTCATGTTACTCGCCAGAGCCAGGAGGATCAACACAGGATTAACT ATGAGGAGAGCATGATGGTGCGTTTAAGTGTCAGTAAGCGAGAGAAAGGACGGCGAAAAC GAGCAAGTATCATGAGCTCACAACTTCATTCCCTCACACACTTCAGTGACATCAGTGCTT TGACAGGAGGAACCCCTCATCTTGATGAGGATCAGAATCTTACTAAGAGGCGGAAGAAGA TACCCAAGAAAGGTCGGAAGAAAAAAGGTTTTCGGAGGCGGCGGTGATTATGGGTGTACA TATTTATGTCTATTTTTTGTCATCCTGGGATACTTCTAATTTCACTGTATGTGTGTTTTT TCCCTTGGAATTCATTAATTAATTTGCTCTGGACATGTGGAAAGATGTTTATTAATAAAA TTGATTTTACTTTTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGGCGCCGGAGGTGCTGGAGTCGGACCTGCCAAATGCTGTGGCACTTTTGAAAAACC TTCAGGAACAGGTGATAGCTGTCACTGCACAAGTGCAAGCCCTGACCAAAAAAGTTCAAG CTAAGGCCTTTCCTACAGAAAAGGGTCTCAGCCTTTTGGAAGTGAAAGATCAGCTGTTGC TCATGTACCTTATGGATTTGAGCCATCTCATCCTACACAAAGCCTCAGGAGGGTCTCTTC AGGGACATGCTGCAGTTTTGAGACTGGTGGAGATTCGCACGGTTTTGGAAAAGCTTCGTC CTTTGGACCAAAAACTGAAGTATCAAATTGACAAACTGGTCAAGACTGCAGTGACAGGCA GCCTCAGTGAGAATGACCCACTCCGTTTTAAGCCTCATCCCAGCAATATGATGAGCAAGT TGAACTCTGAGGATGAAGAGGAAGATGAAGCAGAGGAAGGCCAGTCTGGGGCTTCAGGGA AGAAATCTGGAAAAGCGATAGCTAAGAAATATGTTCCCCCACGCTTGGTTCCAGTGCATT ATGATGAAACAGAAGCTGAGCGGGAGAAGAAGCGCCTAGAACGAGCCAAGAGACGGGCAT TGAGCAGCTCTGTCATTCGTGAACTAAAGGAGCAGTACTCAGATGCCCCAGAGGAAATTC GTGATGCTCGACATCCTCATGTTACTCGCCAGAGCCAGGAGGATCAACACAGGATTAACT ATGAGGAGAGCATGATGGTGCGTTTAAGTGTCAGTAAGCGAGAGAAAGGACGGCGAAAAC GAGCAAGTATCATGAGCTCACAACTTCATTCCCTCACACACTTCAGTGACATCAGTGCTT TGACAGGAGGAACCCCTCATCTTGATGAGGATCAGAATCTTACTAAGAGGCGGAAGAAGA TACCCAAGAAAGGTCGGAAGAAAAAAGGTTTTCGGAGGCGGCGGTGATTATGGGTGTACA TATTTATGTCTATTTTTTGTCATCCTGGGATACTTCTAATTTCACTGTATGTGTGTTTTT TCCCTTGGAATTCATTAATTAATTTGCTCTGGACATGTGGAAAGATGTTTATTAATAAAA TTGATTTTACTTTTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 142-283, gnl|bosTau2|chr10 (14723175-14723034) | |
| 142-283, gnl|canFam2|chr8 (6716283-6716449) | |
| 142-283, gnl|dasNov1|scaffold_5180 (6050-6218) | |
| 142-283, gnl|echTel1|scaffold_311663 (54803-54637) | |
| 142-283, gnl|hg17|chr14 (23014200-23014368) | |
| 142-283, gnl|Hg17|chr14 (23014218-23014359) | |
| 142-283, gnl|loxAfr1|scaffold_19012 (2258-2425) | |
| 142-283, gnl|mm7|chr14 (49887486-49887647) | |
| 142-283, gnl|Mm7|chr14 (49887500-49887641) | |
| 142-283, gnl|monDom2|scaffold_12 (26202847-26202687) | |
| 142-283, gnl|oryCun1|scaffold_204398 (48794-48962) | |
| 142-283, gnl|panTro1|chr15 (21981984-21982152) | |
| 142-283, gnl|rheMac2|chr7 (86315326-86315494) | |
| 142-283, gnl|rn3|chr15 (33143003-33143161) | |
| 142-283, gnl|xenTro1|scaffold_53 (11797-11631) | |
| 543-713, gnl|bosTau2|chr10 (14721936-14721766) | |
| 543-713, gnl|canFam2|chr8 (6717327-6717556) | |
| 543-713, gnl|danRer3|chr24 (14655751-14655519) | |
| 543-713, gnl|dasNov1|scaffold_5180 (7124-7354) | |
| 543-713, gnl|echTel1|scaffold_311663 (53741-53514) | |
| 543-713, gnl|hg17|chr14 (23015283-23015512) | |
| 543-713, gnl|Hg17|chr14 (23015287-23015457) | |
| 543-713, gnl|loxAfr1|scaffold_19012 (3389-3619) | |
| 543-713, gnl|mm7|chr14 (49888481-49888711) | |
| 543-713, gnl|Mm7|chr14 (49888485-49888655) | |
| 543-713, gnl|monDom2|scaffold_12 (26201113-26200883) | |
| 543-713, gnl|oryCun1|scaffold_204398 (49866-50073) | |
| 543-713, gnl|panTro1|chr15 (21983062-21983291) | |
| 543-713, gnl|rheMac2|chr7 (86316413-86316642) | |
| 543-713, gnl|rn3|chr15 (33144115-33144345) | |
| 543-713, gnl|xenTro1|scaffold_53 (9757-9530) | |
| 926-1092, gnl|bosTau2|chr10 (14720218-14720057) | |
| 926-1092, gnl|canFam2|chr8 (6719023-6719433) | |
| 926-1092, gnl|dasNov1|scaffold_5180 (8796-9159) | |
| 926-1092, gnl|echTel1|scaffold_311663 (51739-51363) | |
| 926-1092, gnl|hg17|chr14 (23017010-23017395) | |
| 926-1092, gnl|Hg17|chr14 (23017054-23017217) | |
| 926-1092, gnl|loxAfr1|scaffold_19012 (5102-5478) | |
| 926-1092, gnl|mm7|chr14 (49890391-49890758) | |
| 926-1092, gnl|Mm7|chr14 (49890435-49890576) | |
| 926-1092, gnl|monDom2|scaffold_12 (26199466-26199007) | |
| 926-1092, gnl|oryCun1|scaffold_204398 (51822-52212) | |
| 926-1092, gnl|panTro1|chr15 (21984789-21985174) | |
| 926-1092, gnl|rheMac2|chr7 (86318135-86318509) | |
| 926-1092, gnl|rn3|chr15 (33145712-33146075) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-283, gnl|bosTau2|chr10 (14723175-14723034) | |
| 142-283, gnl|canFam2|chr8 (6716283-6716449) | |
| 142-283, gnl|dasNov1|scaffold_5180 (6050-6218) | |
| 142-283, gnl|echTel1|scaffold_311663 (54803-54637) | |
| 142-283, gnl|hg17|chr14 (23014200-23014368) | |
| 142-283, gnl|Hg17|chr14 (23014218-23014359) | |
| 142-283, gnl|loxAfr1|scaffold_19012 (2258-2425) | |
| 142-283, gnl|mm7|chr14 (49887486-49887647) | |
| 142-283, gnl|Mm7|chr14 (49887500-49887641) | |
| 142-283, gnl|monDom2|scaffold_12 (26202847-26202687) | |
| 142-283, gnl|oryCun1|scaffold_204398 (48794-48962) | |
| 142-283, gnl|panTro1|chr15 (21981984-21982152) | |
| 142-283, gnl|rheMac2|chr7 (86315326-86315494) | |
| 142-283, gnl|rn3|chr15 (33143003-33143161) | |
| 142-283, gnl|xenTro1|scaffold_53 (11797-11631) | |
| 543-713, gnl|bosTau2|chr10 (14721936-14721766) | |
| 543-713, gnl|canFam2|chr8 (6717327-6717556) | |
| 543-713, gnl|danRer3|chr24 (14655751-14655519) | |
| 543-713, gnl|dasNov1|scaffold_5180 (7124-7354) | |
| 543-713, gnl|echTel1|scaffold_311663 (53741-53514) | |
| 543-713, gnl|hg17|chr14 (23015283-23015512) | |
| 543-713, gnl|Hg17|chr14 (23015287-23015457) | |
| 543-713, gnl|loxAfr1|scaffold_19012 (3389-3619) | |
| 543-713, gnl|mm7|chr14 (49888481-49888711) | |
| 543-713, gnl|Mm7|chr14 (49888485-49888655) | |
| 543-713, gnl|monDom2|scaffold_12 (26201113-26200883) | |
| 543-713, gnl|oryCun1|scaffold_204398 (49866-50073) | |
| 543-713, gnl|panTro1|chr15 (21983062-21983291) | |
| 543-713, gnl|rheMac2|chr7 (86316413-86316642) | |
| 543-713, gnl|rn3|chr15 (33144115-33144345) | |
| 543-713, gnl|xenTro1|scaffold_53 (9757-9530) | |
| 926-1092, gnl|bosTau2|chr10 (14720218-14720057) | |
| 926-1092, gnl|canFam2|chr8 (6719023-6719433) | |
| 926-1092, gnl|dasNov1|scaffold_5180 (8796-9159) | |
| 926-1092, gnl|echTel1|scaffold_311663 (51739-51363) | |
| 926-1092, gnl|hg17|chr14 (23017010-23017395) | |
| 926-1092, gnl|Hg17|chr14 (23017054-23017217) | |
| 926-1092, gnl|loxAfr1|scaffold_19012 (5102-5478) | |
| 926-1092, gnl|mm7|chr14 (49890391-49890758) | |
| 926-1092, gnl|Mm7|chr14 (49890435-49890576) | |
| 926-1092, gnl|monDom2|scaffold_12 (26199466-26199007) | |
| 926-1092, gnl|oryCun1|scaffold_204398 (51822-52212) | |
| 926-1092, gnl|panTro1|chr15 (21984789-21985174) | |
| 926-1092, gnl|rheMac2|chr7 (86318135-86318509) | |
| 926-1092, gnl|rn3|chr15 (33145712-33146075) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ski (0.29347) | |
| med (0.232504) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| ill (0.175593) | |
| cut (0.169924) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.29347) | |
| med (0.232504) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| ill (0.175593) | |
| cut (0.169924) | |
| ste (0.135208) | |
| eru (0.120048) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| ldo (0.0970026) |