Non-Coding RNA Search

Ss1.1-Tra1-TCH01A110033.5

Sequence:


               
               AAGTGATGAAAGCTATTGAGTTGAGTATTTTGGCCTTAGTCCAAATCTTTCCTTTCTGAC
TTAAAGCGTCAAGCCCCTTTCCTTAAAGTTAATAATACTAATACTCAGGTTTTCAAGACT
AACTAATAACCACATGAAGTGGGAGTCTAAGAAGGCAGCTGTTAGTAAATTCTGAATCCT
TTTTGTCTGATGACAGACGACAGTAGGTTATCAGTGGGACAGTGCAAAATTGTGAGAGTG
CTTCTGTTTGATAACAAATACATCCAAGACATTTGAAAACTTTACTGGCTCTTTGGAATG
GGAATGCTGGTTTACTAAATGCAAAGGGTATTTCTTTTACTTACAGAAATAAGTAAGAAG
ACTCTCTTGTTGGTGTAGATCTTTTTGCTTTGATTACTGACCTAGAAGTGTGCCTCTTTT
AGGTAGTAACTGGCTCTCTAAAGTAACCACTTTGAAATCCGGGGCTTTCCTCCTCGGAAT
CGCAGGCAGGACAGCAGTGGAGAGCGACGGTGGGCTCACACCTGAGGAGCCCCAGCCCTG
AGACAGACTGTTGGCTTGTGGCATGTCCTTGTGTGGTCGGCGATGTTTGGCACAAGTATC
CAAGGGCCTTTGCCCCCTGAGAAGGATCCCCTCTACTTTCTAGTTTGATGCTCCTTGAGC
TTCCCTGGTGAGATCAGGGATATTACAAATTACTTGAAAATGATTTGGGGGATGGGACAA
GAGAAGGGGTGGGAGCTGAGTGTTTGCTTCACTTTGGAAGGAAATCTGGTACTTGCATTG
TTGGTTGTGATCAACCAAAGAGCCTGTCTCTCTAAGTGGATGTACCAAAGAATCAAGTTC
TTTCCAAATATCCAGCTCCTTCTCAATGAACACAGTGTCCTCCCTACCTGGCTTTTTTAC
AGGTGAAAAGGGACCATGTGGTCACTAGGCCAGAGACCCCCAACTCATGTTCTGCCTAGG
ACTTGAGGCTGTGGTTAACTGCATTTGAAAATCGGTGGGAAATGTTTTCATCTTTTAGAA
ACTTTTTAACCTGTCCTTTTGCTTGATTGTTCAACTCACTAGGTTTTTTTCAGAAGTAAA
AAAGAAAGAAACTGTGTGGTATAATTTTGGTGTTTCCTGCTAAAGTTGTATTGCCAGCAA
TATAGATGCAGCCTCTGAAAATCAGATGAATTTCTCTCAATCTTCCATAAGTTTGAATAT
CCATTTTCTTCTCTGGACACCATGGGCTGTCCGATTCGGCTCCACCAGCAGTACTGGCGT
TGTCCACAAGGGGGCAACAAAACACTTTGATCCTCGCCTTCTAAAGCAAGATCCTGATTT
TAAATCCCTTGTAAAACATTCTCTCTTGGCGAAATGCTGATTTATAGAGCTTGGTTTTTA
AGACATTTTCCCTTATTACTTAAGTACTCAGCCTTCATGACACAAAGGTCGATGTGGGGG
TCAGCGGTCCTTGGGAGTCAGGCATCTTAAGTAGCTTTTTTACATAGTGGTGCCCGAGAT
GGAACACCAGGACCTTCCCATGGGGGAGCCGTTGTGTGCCAAACACTGAGCAGGAAGGCG
ACCCTCACTCCTTTCTCCCAAATCCCACCTCCGGCCACGGCCATCACGTCTCTCTGAGAA
GAACAAAGAGCAACAGGGGTAACTGGAGTTGAAGGAAATGCTTCTCACCTTCTCTGCTCC
ACGTGGATGTCTGTTACATCAGAGAGTGCGGCCTCGGGGTCAGCCCCGCATCTTGACCCC
CTAGGAGGTCCCCTGCGGCAGCCACTGCTCCAGGTTAGGGTTCCGCTGGCATTCCCTCTG
TGTCGGTGACTTGTCTTAGGGCTCCTAACCCTCGTCTGCTCTCTGATCCCAAGTTCCATC
TGTGCTCCTCGCAGCGTCTTCTTCACAAGAAGCAGGTCAGCAATCAACTAAGAGGAAACA
CCCCACCCTAGCTGTTTAGCCTGCAGACATGGGAGGCGTTAGCCCCTGGGATGGCCTTCT
GATCGGATCTCTGCCTGGCCCTTTGTCCCCAGCCAAGTCTGACCCTGAGCAGTACAGGTC
GCTGGAGGTGTCCGCTTAACTCCAACACTTGACGAAAAATGAAACTAAAGCTGTGATCAG
TTTAGAAGACGAGGGGGCCAGGTGGGACTTGTTTGTCTTTATTTTTGTTTTTCCCAACAG
TACTGAAATCACTTGCACTTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGATGAAAGCTATTGAGTTGAGTATTTTGGCCTTAGTCCAAATCTTTCCTTTCTGAC
TTAAAGCGTCAAGCCCCTTTCCTTAAAGTTAATAATACTAATACTCAGGTTTTCAAGACT
AACTAATAACCACATGAAGTGGGAGTCTAAGAAGGCAGCTGTTAGTAAATTCTGAATCCT
TTTTGTCTGATGACAGACGACAGTAGGTTATCAGTGGGACAGTGCAAAATTGTGAGAGTG
CTTCTGTTTGATAACAAATACATCCAAGACATTTGAAAACTTTACTGGCTCTTTGGAATG
GGAATGCTGGTTTACTAAATGCAAAGGGTATTTCTTTTACTTACAGAAATAAGTAAGAAG
ACTCTCTTGTTGGTGTAGATCTTTTTGCTTTGATTACTGACCTAGAAGTGTGCCTCTTTT
AGGTAGTAACTGGCTCTCTAAAGTAACCACTTTGAAATCCGGGGCTTTCCTCCTCGGAAT
CGCAGGCAGGACAGCAGTGGAGAGCGACGGTGGGCTCACACCTGAGGAGCCCCAGCCCTG
AGACAGACTGTTGGCTTGTGGCATGTCCTTGTGTGGTCGGCGATGTTTGGCACAAGTATC
CAAGGGCCTTTGCCCCCTGAGAAGGATCCCCTCTACTTTCTAGTTTGATGCTCCTTGAGC
TTCCCTGGTGAGATCAGGGATATTACAAATTACTTGAAAATGATTTGGGGGATGGGACAA
GAGAAGGGGTGGGAGCTGAGTGTTTGCTTCACTTTGGAAGGAAATCTGGTACTTGCATTG
TTGGTTGTGATCAACCAAAGAGCCTGTCTCTCTAAGTGGATGTACCAAAGAATCAAGTTC
TTTCCAAATATCCAGCTCCTTCTCAATGAACACAGTGTCCTCCCTACCTGGCTTTTTTAC
AGGTGAAAAGGGACCATGTGGTCACTAGGCCAGAGACCCCCAACTCATGTTCTGCCTAGG
ACTTGAGGCTGTGGTTAACTGCATTTGAAAATCGGTGGGAAATGTTTTCATCTTTTAGAA
ACTTTTTAACCTGTCCTTTTGCTTGATTGTTCAACTCACTAGGTTTTTTTCAGAAGTAAA
AAAGAAAGAAACTGTGTGGTATAATTTTGGTGTTTCCTGCTAAAGTTGTATTGCCAGCAA
TATAGATGCAGCCTCTGAAAATCAGATGAATTTCTCTCAATCTTCCATAAGTTTGAATAT
CCATTTTCTTCTCTGGACACCATGGGCTGTCCGATTCGGCTCCACCAGCAGTACTGGCGT
TGTCCACAAGGGGGCAACAAAACACTTTGATCCTCGCCTTCTAAAGCAAGATCCTGATTT
TAAATCCCTTGTAAAACATTCTCTCTTGGCGAAATGCTGATTTATAGAGCTTGGTTTTTA
AGACATTTTCCCTTATTACTTAAGTACTCAGCCTTCATGACACAAAGGTCGATGTGGGGG
TCAGCGGTCCTTGGGAGTCAGGCATCTTAAGTAGCTTTTTTACATAGTGGTGCCCGAGAT
GGAACACCAGGACCTTCCCATGGGGGAGCCGTTGTGTGCCAAACACTGAGCAGGAAGGCG
ACCCTCACTCCTTTCTCCCAAATCCCACCTCCGGCCACGGCCATCACGTCTCTCTGAGAA
GAACAAAGAGCAACAGGGGTAACTGGAGTTGAAGGAAATGCTTCTCACCTTCTCTGCTCC
ACGTGGATGTCTGTTACATCAGAGAGTGCGGCCTCGGGGTCAGCCCCGCATCTTGACCCC
CTAGGAGGTCCCCTGCGGCAGCCACTGCTCCAGGTTAGGGTTCCGCTGGCATTCCCTCTG
TGTCGGTGACTTGTCTTAGGGCTCCTAACCCTCGTCTGCTCTCTGATCCCAAGTTCCATC
TGTGCTCCTCGCAGCGTCTTCTTCACAAGAAGCAGGTCAGCAATCAACTAAGAGGAAACA
CCCCACCCTAGCTGTTTAGCCTGCAGACATGGGAGGCGTTAGCCCCTGGGATGGCCTTCT
GATCGGATCTCTGCCTGGCCCTTTGTCCCCAGCCAAGTCTGACCCTGAGCAGTACAGGTC
GCTGGAGGTGTCCGCTTAACTCCAACACTTGACGAAAAATGAAACTAAAGCTGTGATCAG
TTTAGAAGACGAGGGGGCCAGGTGGGACTTGTTTGTCTTTATTTTTGTTTTTCCCAACAG
TACTGAAATCACTTGCACTTTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1893-2008, + strand, RNAz p=0.697614

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1893-2008, + strand, RNAz p=0.697614

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               8-1473, gnl|bosTau2|chr19 (30079758-30081228)
               

               
               8-1473, gnl|Hg17|chr17 (44724529-44723052)
               

               
               8-1473, gnl|Mm7|chr11 (95878802-95880093)
               


               
               1507-2184, gnl|bosTau2|chr19 (30081233-30081907)
               

               
               1507-2184, gnl|Hg17|chr17 (44723012-44722349)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1473, gnl|bosTau2|chr19 (30079758-30081228)
               

               
               8-1473, gnl|Hg17|chr17 (44724529-44723052)
               

               
               8-1473, gnl|Mm7|chr11 (95878802-95880093)
               


               
               1507-2184, gnl|bosTau2|chr19 (30081233-30081907)
               

               
               1507-2184, gnl|Hg17|chr17 (44723012-44722349)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.147427)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	8-1473, gnl\|bosTau2\|chr19 (30079758-30081228)
	8-1473, gnl\|Hg17\|chr17 (44724529-44723052)
	8-1473, gnl\|Mm7\|chr11 (95878802-95880093)

	1507-2184, gnl\|bosTau2\|chr19 (30081233-30081907)
	1507-2184, gnl\|Hg17\|chr17 (44723012-44722349)