Non-Coding RNA Search

Ss1.1-Tra1-TCH01A110039.5

Sequence:


               
               CGCCGCGGAGCCGACATGGGAGCTGCGCGCGCCCTCCCGGAGCCCACACCTGTGTGAGCG
GCGCGGAGAGCCGGGGCCCGGGCGGGCGGCTCGGCGCGGGGTGATGCTCGGCATGGCGGG
GACTCCAGGGCTTCTCTTCGCCCTCCTCTTCCTCGTCCTCCTCTGTGCTGTGGGGCAGGT
GAGTCCCTACAGTGCCCACTGGAAACCCACCTGGCCTGCTTACCGCCTCCCCGTGGTGTT
GCCCCAGTCCACCTTCAACTTGGCCAAGCCGGACTTTGGGGCCGAAGCCAAATTGGAAGT
GTCCTCCTCGTGTGGACCCCAGTGTCATAAGGGAACGCCCCTGCCCACTTACGAAGAGGT
CAAGCAGTACCTGTCTTACGAAACCCTCTATGCCAACGGCAGCCGCACCGAGACGCAGGT
GGGCATCTACGTCCTCAGAAGTGGCGAAGGCGAGGCCTCGGGAAAGTCTCGAAGGAAGCG
GCAGATTTATGGCTACGACAGCAGATTCAGCATTTTTGGGAAGGACTTCCTGCTCAACTA
CCCCTTCTCGACATCGGTGAAGTTATCTACGGGCTGCACCGGCACCCTGGTGGCCGAGAA
GCACGTCCTCACGGCTGCCCACTGCATACATGATGGGAAAACCTACGTGAAAGGAACCCA
GAAACTCCGAGTGGGCTTCCTGAAGCCCAAGTTTAAAGACGGTGGTCGAGGAGCCAACAA
CTCGAGCTCGGCGGTGCCCGAGAAGATGAAATTTCAGTGGATCCGAGTGAAGCGCACCCA
CGTGCCCAAGGGCTGGATCAAGGGCAATGCCAATGACATTGGCATGGATTACGACTATGC
CCTCCTGGAACTCAAAAAACCCCACAAGAGAAAGTTCATGAAGATTGGGGTGAGCCCTCC
CGCCAAGCAGCTGCCGGGAGGCAGAATCCACTTCTCGGGTTATGACAATGACCGACCAGG
CAACCTGGTGTACCGCTTCTGTGACGTCAAAGACGAGACCTATGACCTGCTCTACCAGCA
GTGTGACGCCCAGCCCGGGGCCAGCGGGTCCGGGGTCTACGTGAGGATGTGGAAGAGACA
GCAGCAGAAGTGGGAACGAAAAATTATTGGCATCTTTTCTGGGCACCAGTGGGTAGACAT
GAATGGTTCTCCACAGGATTTCAACGTGGCCGTTAGAATCACCCCTCTCAAATATGCCCA
GATTTGCTACTGGATTAAAGGAAACTATCTGGATTGTAGGGAGGGGTGACATGGTGTTCC
TTCCTGGTTGCATTTCATGGTCTTCCTGTATTTATATTAGGAGAGGCCAGATTTTGTCAT
TGGGGTGTGTGGGTGGGTGTGTGTGTGTGTGTGTGTGCACGCGTGCATGTGTGAACTGTG
TTACGATATCTTCTACCTAATTTTTTTTAACTGCAAGATAACTGGCCGTATCATTTGAAA
ACTGGTTTGTGGATCATATATCATGTAAGCAGTTTGGAGGCATACTTTTGCATAGATATT
AAAAAAAACATGCTGATGTTTGGGGCAATAGGGAAGATTTAGTGATTAAGTTAATCTTTC
ACTTTTTGAGAACTTTGATTTTTATTTCACCTGAACTTGTTTCTGAAGTTTATATTAAAT
CCCTGGCCTACGGGAGATAAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGCGGAGCCGACATGGGAGCTGCGCGCGCCCTCCCGGAGCCCACACCTGTGTGAGCG
GCGCGGAGAGCCGGGGCCCGGGCGGGCGGCTCGGCGCGGGGTGATGCTCGGCATGGCGGG
GACTCCAGGGCTTCTCTTCGCCCTCCTCTTCCTCGTCCTCCTCTGTGCTGTGGGGCAGGT
GAGTCCCTACAGTGCCCACTGGAAACCCACCTGGCCTGCTTACCGCCTCCCCGTGGTGTT
GCCCCAGTCCACCTTCAACTTGGCCAAGCCGGACTTTGGGGCCGAAGCCAAATTGGAAGT
GTCCTCCTCGTGTGGACCCCAGTGTCATAAGGGAACGCCCCTGCCCACTTACGAAGAGGT
CAAGCAGTACCTGTCTTACGAAACCCTCTATGCCAACGGCAGCCGCACCGAGACGCAGGT
GGGCATCTACGTCCTCAGAAGTGGCGAAGGCGAGGCCTCGGGAAAGTCTCGAAGGAAGCG
GCAGATTTATGGCTACGACAGCAGATTCAGCATTTTTGGGAAGGACTTCCTGCTCAACTA
CCCCTTCTCGACATCGGTGAAGTTATCTACGGGCTGCACCGGCACCCTGGTGGCCGAGAA
GCACGTCCTCACGGCTGCCCACTGCATACATGATGGGAAAACCTACGTGAAAGGAACCCA
GAAACTCCGAGTGGGCTTCCTGAAGCCCAAGTTTAAAGACGGTGGTCGAGGAGCCAACAA
CTCGAGCTCGGCGGTGCCCGAGAAGATGAAATTTCAGTGGATCCGAGTGAAGCGCACCCA
CGTGCCCAAGGGCTGGATCAAGGGCAATGCCAATGACATTGGCATGGATTACGACTATGC
CCTCCTGGAACTCAAAAAACCCCACAAGAGAAAGTTCATGAAGATTGGGGTGAGCCCTCC
CGCCAAGCAGCTGCCGGGAGGCAGAATCCACTTCTCGGGTTATGACAATGACCGACCAGG
CAACCTGGTGTACCGCTTCTGTGACGTCAAAGACGAGACCTATGACCTGCTCTACCAGCA
GTGTGACGCCCAGCCCGGGGCCAGCGGGTCCGGGGTCTACGTGAGGATGTGGAAGAGACA
GCAGCAGAAGTGGGAACGAAAAATTATTGGCATCTTTTCTGGGCACCAGTGGGTAGACAT
GAATGGTTCTCCACAGGATTTCAACGTGGCCGTTAGAATCACCCCTCTCAAATATGCCCA
GATTTGCTACTGGATTAAAGGAAACTATCTGGATTGTAGGGAGGGGTGACATGGTGTTCC
TTCCTGGTTGCATTTCATGGTCTTCCTGTATTTATATTAGGAGAGGCCAGATTTTGTCAT
TGGGGTGTGTGGGTGGGTGTGTGTGTGTGTGTGTGTGCACGCGTGCATGTGTGAACTGTG
TTACGATATCTTCTACCTAATTTTTTTTAACTGCAAGATAACTGGCCGTATCATTTGAAA
ACTGGTTTGTGGATCATATATCATGTAAGCAGTTTGGAGGCATACTTTTGCATAGATATT
AAAAAAAACATGCTGATGTTTGGGGCAATAGGGAAGATTTAGTGATTAAGTTAATCTTTC
ACTTTTTGAGAACTTTGATTTTTATTTCACCTGAACTTGTTTCTGAAGTTTATATTAAAT
CCCTGGCCTACGGGAGATAAATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834863|ref|XP_581199.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834863|ref|XP_581199.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-374, - strand, RNAz p=0.556364

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-374, - strand, RNAz p=0.556364

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               96-1637, gnl|bosTau2|chr29 (4035238-4036760)
               

               
               96-1637, gnl|Hg17|chr11 (86196317-86197861)
               

               
               96-1637, gnl|Mm7|chr7 (85447938-85446440)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-1637, gnl|bosTau2|chr29 (4035238-4036760)
               

               
               96-1637, gnl|Hg17|chr11 (86196317-86197861)
               

               
               96-1637, gnl|Mm7|chr7 (85447938-85446440)

Expressed library(ies): 36 entry(ies)

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Expressed library(ies): 36 entry(ies)

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               pro (0.512033)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               mga (0.32041)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cst (0.420109)
               

               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               mga (0.32041)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               ldo (0.194005)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	96-1637, gnl\|bosTau2\|chr29 (4035238-4036760)
	96-1637, gnl\|Hg17\|chr11 (86196317-86197861)
	96-1637, gnl\|Mm7\|chr7 (85447938-85446440)

	pro (0.512033)
	cst (0.420109)
	amn (0.417711)
	cov (0.396458)
	sto (0.359648)
	mcp (0.341297)
	mga (0.32041)
	cga (0.279096)
	nmm (0.265604)
	eru (0.240096)
	pgl (0.236967)
	mas (0.210305)
	hea (0.204499)
	fli (0.202881)
	ldo (0.194005)
	cki (0.165235)
	nco (0.161734)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	csk (0.140746)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)