Ss1.1-Tra1-TCH01A110075.5.52
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTCTCGCGAGACCTGGCGGAGCGGAGCCGGGAGGGCCTGTGGAGTGTGGAGGTCGTTG GAGTCACTTTCTTGCTGCCAGCTCGTTTGCCGGCCGGTCCTCTCCCCGCACGCCCCAGCC ATGCTCTCCGCCCTCGCCCGGCCTGCCGGCGCCGCTCTCCGCCGCAGCTTCAGCACCTCG GCCCAGAACAATGCCAAGGTAGCTGTGCTGGGGGCTTCCGGAGGAATCGGGCAGCCCCTT TCGCTTCTCCTGAAGAACAGCCCCTTGGTGAGCCGCCTGACCCTCTACGATATCGCGCAC ACACCCGGAGTGGCCGCGGATCTGAGCCACATCGAGACCAGAGCGACTGTGAAAGGCTAC CTCGGACCTGAGCAGCTGCCAGACTGCCTGAAGGGCTGCGATGTGGTGGTTATTCCAGCC GGAGTCCCAAGAAAGCCAGGCATGACACGGGATGACCTGTTCAACACCAACGCCACCATC GTGGCCACCCTGACGGCTGCCTGCGCCCAGCACTGCCCCGACGCCATGATCTGCATCATT TCCAACCCGGTTAACTCCACCATCCCAATCACGGCGGAGGTCTTCAAGAAACACGGCGTG TACAACCCCAATAAAATCTTCGGGGTGACGACCCTGGACATTGTCCGAGCCAACGCTTTT GTTGCAGAGCTGAAGGGTTTGGACCCGGCTCGAGTCAGCGTTCCCGTCATTGGCGGCCAC GCCGGGAAGACCATCATCCCGCTCATCTCTCAGTGCACCCCGAAGGTGGACTTTCCGCAG GACCAGCTCTCCACCCTCACCGGGCGCATCCAGGAGGCCGGCACCGAGGTGGTCAAGGCT AAGGCCGGAGCAGGCTCTGCCACCCTGTCCATGGCATATGCCGGAGCCCGGTTTGTCTTC TCCCTCGTGGATGCGATGAACGGGAAGGAAGGTGTTGTCGAGTGTTCCTTTGTCAAGTCC CAGGAAACGGACTGTCCGTATTTCTCCACGCCGTTGCTGCTGGGGAAAAAGGGCATCGAG AAGAATCTAGGCATCGGCAAAATCTCCCCTTTTGAAGAGAAGATGATCGCCGAGGCCATT CCTGAGCTGAAAGCCTCCATCAAGAAAGGAGAGGAGTTTGTCAAGAACATGAAATGAGCA GGCGGTTGGCGAGCAGTCCGCTTCCTTAACTTATTCGGGCATCATGTCACTGTAAAGCCA TTTCAGACCCCTCTGTCTCCTCCCTTTGCTTTGGTGATGAGTGTCCTGTTCACAAAGCAC CCCTTCCAAATCTCGGGGCGTCTCTCGGTGCATCCGTAAAGCAGGCTCTGGTCTTGTTTT TGAGAGTCTCCTCCGGTTGAATACTCGGCTTTCTTCCCCAACAGAGCTGACTGCAGAGTG TCCATCGTGAATCGGAACTAGATGTGTTTTCAAAATAGACGGAAGCATGATGGTCTGTCA GTAGCTTCAGATCTCACATCTTTATCAGTAACTGCTTCTCCCACCCTGCCCTCTGCTCCG TCAAGTCCCTCGGGTGTGTGGGCTGAAGGAAGGTCTGGCTGCATCCGAGAGGGTGGCAGC CCGGTGGCCAACGCCAGGCTGCCGTCTTATGTTCCAAGCTTGTTTCTGTGTGTGTTTTCT GGCCAAGCAAACAGCACCATTGGCTGGATTTCGTTGTCTAATTCTGATCAAGCCCTGAAA TTCAGTGGCAGTGACAATCCACAGCCAGAAGTGGGAGGAAAGCTGGGCAGGGCAGGACAG CTGCACCAAAACACCAGCTGCCACCGCCGGGCTGAAGACATGGGGAAGGGGTTTCACGGC CTCATCAGTGGCCTGAGGGGACTTCGTTGCATTAGCTGGGTTTACGGTAAATGTGAGGAA TTACAGGAGACCTGACTCCCTTAGTGTCAGGTGAAAACAGCTCCATACCTGGGGAAGAAC TTTCTGGCCACGGGTGATGAATGACCTTCCAGTGAAAGCACAGGTGAGGGTGGAGCCCCC CCCAGTGGACAGATACTCATTTATCAACAGCTTTTTTTTTTTTTTCCTTAAAACTGAAAT GGATTTTATCGTGTGACATTGTTTTCTTATGCAAATAAATAATGTTCACTGTTTAAAACC TAAAATGTAGCCAAATAATAAAATCAGGAAATATATGACCAGCATATGGTCCTCTTAATT ATGCATATTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTCTCGCGAGACCTGGCGGAGCGGAGCCGGGAGGGCCTGTGGAGTGTGGAGGTCGTTG GAGTCACTTTCTTGCTGCCAGCTCGTTTGCCGGCCGGTCCTCTCCCCGCACGCCCCAGCC ATGCTCTCCGCCCTCGCCCGGCCTGCCGGCGCCGCTCTCCGCCGCAGCTTCAGCACCTCG GCCCAGAACAATGCCAAGGTAGCTGTGCTGGGGGCTTCCGGAGGAATCGGGCAGCCCCTT TCGCTTCTCCTGAAGAACAGCCCCTTGGTGAGCCGCCTGACCCTCTACGATATCGCGCAC ACACCCGGAGTGGCCGCGGATCTGAGCCACATCGAGACCAGAGCGACTGTGAAAGGCTAC CTCGGACCTGAGCAGCTGCCAGACTGCCTGAAGGGCTGCGATGTGGTGGTTATTCCAGCC GGAGTCCCAAGAAAGCCAGGCATGACACGGGATGACCTGTTCAACACCAACGCCACCATC GTGGCCACCCTGACGGCTGCCTGCGCCCAGCACTGCCCCGACGCCATGATCTGCATCATT TCCAACCCGGTTAACTCCACCATCCCAATCACGGCGGAGGTCTTCAAGAAACACGGCGTG TACAACCCCAATAAAATCTTCGGGGTGACGACCCTGGACATTGTCCGAGCCAACGCTTTT GTTGCAGAGCTGAAGGGTTTGGACCCGGCTCGAGTCAGCGTTCCCGTCATTGGCGGCCAC GCCGGGAAGACCATCATCCCGCTCATCTCTCAGTGCACCCCGAAGGTGGACTTTCCGCAG GACCAGCTCTCCACCCTCACCGGGCGCATCCAGGAGGCCGGCACCGAGGTGGTCAAGGCT AAGGCCGGAGCAGGCTCTGCCACCCTGTCCATGGCATATGCCGGAGCCCGGTTTGTCTTC TCCCTCGTGGATGCGATGAACGGGAAGGAAGGTGTTGTCGAGTGTTCCTTTGTCAAGTCC CAGGAAACGGACTGTCCGTATTTCTCCACGCCGTTGCTGCTGGGGAAAAAGGGCATCGAG AAGAATCTAGGCATCGGCAAAATCTCCCCTTTTGAAGAGAAGATGATCGCCGAGGCCATT CCTGAGCTGAAAGCCTCCATCAAGAAAGGAGAGGAGTTTGTCAAGAACATGAAATGAGCA GGCGGTTGGCGAGCAGTCCGCTTCCTTAACTTATTCGGGCATCATGTCACTGTAAAGCCA TTTCAGACCCCTCTGTCTCCTCCCTTTGCTTTGGTGATGAGTGTCCTGTTCACAAAGCAC CCCTTCCAAATCTCGGGGCGTCTCTCGGTGCATCCGTAAAGCAGGCTCTGGTCTTGTTTT TGAGAGTCTCCTCCGGTTGAATACTCGGCTTTCTTCCCCAACAGAGCTGACTGCAGAGTG TCCATCGTGAATCGGAACTAGATGTGTTTTCAAAATAGACGGAAGCATGATGGTCTGTCA GTAGCTTCAGATCTCACATCTTTATCAGTAACTGCTTCTCCCACCCTGCCCTCTGCTCCG TCAAGTCCCTCGGGTGTGTGGGCTGAAGGAAGGTCTGGCTGCATCCGAGAGGGTGGCAGC CCGGTGGCCAACGCCAGGCTGCCGTCTTATGTTCCAAGCTTGTTTCTGTGTGTGTTTTCT GGCCAAGCAAACAGCACCATTGGCTGGATTTCGTTGTCTAATTCTGATCAAGCCCTGAAA TTCAGTGGCAGTGACAATCCACAGCCAGAAGTGGGAGGAAAGCTGGGCAGGGCAGGACAG CTGCACCAAAACACCAGCTGCCACCGCCGGGCTGAAGACATGGGGAAGGGGTTTCACGGC CTCATCAGTGGCCTGAGGGGACTTCGTTGCATTAGCTGGGTTTACGGTAAATGTGAGGAA TTACAGGAGACCTGACTCCCTTAGTGTCAGGTGAAAACAGCTCCATACCTGGGGAAGAAC TTTCTGGCCACGGGTGATGAATGACCTTCCAGTGAAAGCACAGGTGAGGGTGGAGCCCCC CCCAGTGGACAGATACTCATTTATCAACAGCTTTTTTTTTTTTTTCCTTAAAACTGAAAT GGATTTTATCGTGTGACATTGTTTTCTTATGCAAATAAATAATGTTCACTGTTTAAAACC TAAAATGTAGCCAAATAATAAAATCAGGAAATATATGACCAGCATATGGTCCTCTTAATT ATGCATATTTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1005-1123, - strand, RNAz p=0.734251 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1005-1123, - strand, RNAz p=0.734251 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 176-356, gnl|bosTau2|chr25 (30841195-30841375) | |
| 176-356, gnl|canFam2|chr6 (10395919-10396117) | |
| 176-356, gnl|danRer3|chr10 (29056870-29056678) | |
| 176-356, gnl|echTel1|scaffold_183757 (4266-4446) | |
| 176-356, gnl|fr1|chrUn (55594515-55594317) | |
| 176-356, gnl|galGal2|chr19 (4019597-4019397) | |
| 176-356, gnl|hg17|chr7 (75328780-75328980) | |
| 176-356, gnl|Hg17|chr7 (75328788-75328968) | |
| 176-356, gnl|loxAfr1|scaffold_173062 (498-697) | |
| 176-356, gnl|mm7|chr5 (134754567-134754766) | |
| 176-356, gnl|Mm7|chr5 (134754574-134754754) | |
| 176-356, gnl|monDom2|scaffold_77 (5070013-5069816) | |
| 176-356, gnl|oryCun1|scaffold_170234 (7729-7530) | |
| 176-356, gnl|panTro1|chr6 (76425803-76426003) | |
| 176-356, gnl|rheMac2|chr3 (50214840-50214639) | |
| 176-356, gnl|rn3|chr12 (22015841-22015642) | |
| 176-356, gnl|tetNig1|chr8 (3396716-3396548) | |
| 176-356, gnl|xenTro1|scaffold_38 (692751-692571) | |
| 549-676, gnl|bosTau2|chr25 (30844939-30845066) | |
| 549-676, gnl|canFam2|chr6 (10399499-10399650) | |
| 549-676, gnl|danRer3|chr10 (29054633-29054493) | |
| 549-676, gnl|dasNov1|scaffold_111631 (2416-2263) | |
| 549-676, gnl|echTel1|scaffold_183757 (4642-4766) | |
| 549-676, gnl|fr1|chrUn (55594135-55594008) | |
| 549-676, gnl|galGal2|chr19 (4017291-4017140) | |
| 549-676, gnl|hg17|chr7 (75334333-75334485) | |
| 549-676, gnl|Hg17|chr7 (75334341-75334468) | |
| 549-676, gnl|loxAfr1|scaffold_173062 (4695-4817) | |
| 549-676, gnl|mm7|chr5 (134757505-134757660) | |
| 549-676, gnl|Mm7|chr5 (134757512-134757639) | |
| 549-676, gnl|monDom2|scaffold_77 (5066284-5066132) | |
| 549-676, gnl|oryCun1|scaffold_170234 (4513-4365) | |
| 549-676, gnl|panTro1|chr6 (76431452-76431604) | |
| 549-676, gnl|rheMac2|chr3 (50209016-50208864) | |
| 549-676, gnl|rn3|chr12 (22012977-22012825) | |
| 549-676, gnl|tetNig1|chr8 (3396342-3396219) | |
| 549-676, gnl|xenTro1|scaffold_38 (690181-690051) | |
| 751-854, gnl|bosTau2|chr25 (30848264-30848367) | |
| 751-854, gnl|canFam2|chr6 (10403731-10403842) | |
| 751-854, gnl|danRer3|chr10 (29052705-29052594) | |
| 751-854, gnl|dasNov1|scaffold_38057 (35954-36066) | |
| 751-854, gnl|echTel1|scaffold_183757 (4844-4944) | |
| 751-854, gnl|fr1|chrUn (55593933-55593832) | |
| 751-854, gnl|galGal2|chr19 (4015276-4015177) | |
| 751-854, gnl|hg17|chr7 (75338306-75338417) | |
| 751-854, gnl|Hg17|chr7 (75338305-75338408) | |
| 751-854, gnl|loxAfr1|scaffold_54734 (4115-4226) | |
| 751-854, gnl|mm7|chr5 (134760479-134760590) | |
| 751-854, gnl|Mm7|chr5 (134760478-134760581) | |
| 751-854, gnl|monDom2|scaffold_77 (5064218-5064107) | |
| 751-854, gnl|oryCun1|scaffold_170234 (3108-2999) | |
| 751-854, gnl|panTro1|chr6 (76435420-76435531) | |
| 751-854, gnl|rheMac2|chr3 (50205070-50204959) | |
| 751-854, gnl|rn3|chr12 (22009754-22009642) | |
| 751-854, gnl|tetNig1|chr8 (3396141-3396040) | |
| 751-854, gnl|xenTro1|scaffold_38 (688016-687912) | |
| 1005-1882, gnl|bosTau2|chr25 (30850055-30850938) | |
| 1005-1882, gnl|Hg17|chr7 (75340247-75341171) | |
| 1899-2172, gnl|bosTau2|chr25 (30850989-30851248) | |
| 1899-2172, gnl|Hg17|chr7 (75341228-75341502) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-356, gnl|bosTau2|chr25 (30841195-30841375) | |
| 176-356, gnl|canFam2|chr6 (10395919-10396117) | |
| 176-356, gnl|danRer3|chr10 (29056870-29056678) | |
| 176-356, gnl|echTel1|scaffold_183757 (4266-4446) | |
| 176-356, gnl|fr1|chrUn (55594515-55594317) | |
| 176-356, gnl|galGal2|chr19 (4019597-4019397) | |
| 176-356, gnl|hg17|chr7 (75328780-75328980) | |
| 176-356, gnl|Hg17|chr7 (75328788-75328968) | |
| 176-356, gnl|loxAfr1|scaffold_173062 (498-697) | |
| 176-356, gnl|mm7|chr5 (134754567-134754766) | |
| 176-356, gnl|Mm7|chr5 (134754574-134754754) | |
| 176-356, gnl|monDom2|scaffold_77 (5070013-5069816) | |
| 176-356, gnl|oryCun1|scaffold_170234 (7729-7530) | |
| 176-356, gnl|panTro1|chr6 (76425803-76426003) | |
| 176-356, gnl|rheMac2|chr3 (50214840-50214639) | |
| 176-356, gnl|rn3|chr12 (22015841-22015642) | |
| 176-356, gnl|tetNig1|chr8 (3396716-3396548) | |
| 176-356, gnl|xenTro1|scaffold_38 (692751-692571) | |
| 549-676, gnl|bosTau2|chr25 (30844939-30845066) | |
| 549-676, gnl|canFam2|chr6 (10399499-10399650) | |
| 549-676, gnl|danRer3|chr10 (29054633-29054493) | |
| 549-676, gnl|dasNov1|scaffold_111631 (2416-2263) | |
| 549-676, gnl|echTel1|scaffold_183757 (4642-4766) | |
| 549-676, gnl|fr1|chrUn (55594135-55594008) | |
| 549-676, gnl|galGal2|chr19 (4017291-4017140) | |
| 549-676, gnl|hg17|chr7 (75334333-75334485) | |
| 549-676, gnl|Hg17|chr7 (75334341-75334468) | |
| 549-676, gnl|loxAfr1|scaffold_173062 (4695-4817) | |
| 549-676, gnl|mm7|chr5 (134757505-134757660) | |
| 549-676, gnl|Mm7|chr5 (134757512-134757639) | |
| 549-676, gnl|monDom2|scaffold_77 (5066284-5066132) | |
| 549-676, gnl|oryCun1|scaffold_170234 (4513-4365) | |
| 549-676, gnl|panTro1|chr6 (76431452-76431604) | |
| 549-676, gnl|rheMac2|chr3 (50209016-50208864) | |
| 549-676, gnl|rn3|chr12 (22012977-22012825) | |
| 549-676, gnl|tetNig1|chr8 (3396342-3396219) | |
| 549-676, gnl|xenTro1|scaffold_38 (690181-690051) | |
| 751-854, gnl|bosTau2|chr25 (30848264-30848367) | |
| 751-854, gnl|canFam2|chr6 (10403731-10403842) | |
| 751-854, gnl|danRer3|chr10 (29052705-29052594) | |
| 751-854, gnl|dasNov1|scaffold_38057 (35954-36066) | |
| 751-854, gnl|echTel1|scaffold_183757 (4844-4944) | |
| 751-854, gnl|fr1|chrUn (55593933-55593832) | |
| 751-854, gnl|galGal2|chr19 (4015276-4015177) | |
| 751-854, gnl|hg17|chr7 (75338306-75338417) | |
| 751-854, gnl|Hg17|chr7 (75338305-75338408) | |
| 751-854, gnl|loxAfr1|scaffold_54734 (4115-4226) | |
| 751-854, gnl|mm7|chr5 (134760479-134760590) | |
| 751-854, gnl|Mm7|chr5 (134760478-134760581) | |
| 751-854, gnl|monDom2|scaffold_77 (5064218-5064107) | |
| 751-854, gnl|oryCun1|scaffold_170234 (3108-2999) | |
| 751-854, gnl|panTro1|chr6 (76435420-76435531) | |
| 751-854, gnl|rheMac2|chr3 (50205070-50204959) | |
| 751-854, gnl|rn3|chr12 (22009754-22009642) | |
| 751-854, gnl|tetNig1|chr8 (3396141-3396040) | |
| 751-854, gnl|xenTro1|scaffold_38 (688016-687912) | |
| 1005-1882, gnl|bosTau2|chr25 (30850055-30850938) | |
| 1005-1882, gnl|Hg17|chr7 (75340247-75341171) | |
| 1899-2172, gnl|bosTau2|chr25 (30850989-30851248) | |
| 1899-2172, gnl|Hg17|chr7 (75341228-75341502) |
| Expressed library(ies): 43 entry(ies) | More info |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
| cov (1.32153) | |
| mas (1.26183) | |
| nep (0.919625) | |
| jej (0.791374) | |
| cst (0.700182) | |
| nms (0.641574) | |
| ssp (0.542079) | |
| ton (0.526501) | |
| cut (0.509771) | |
| cbe (0.478469) | |
| amn (0.417711) | |
| hea (0.408998) | |
| ill (0.351185) | |
| cki (0.330469) | |
| csp (0.322373) | |
| cli (0.305623) | |
| cag (0.302389) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| csk (0.281492) | |
| fce (0.271592) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| eje (0.0988338) |
| Expressed library(ies): 43 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (1.32153) | |
| mas (1.26183) | |
| nep (0.919625) | |
| jej (0.791374) | |
| cst (0.700182) | |
| nms (0.641574) | |
| ssp (0.542079) | |
| ton (0.526501) | |
| cut (0.509771) | |
| cbe (0.478469) | |
| amn (0.417711) | |
| hea (0.408998) | |
| ill (0.351185) | |
| cki (0.330469) | |
| csp (0.322373) | |
| cli (0.305623) | |
| cag (0.302389) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| csk (0.281492) | |
| fce (0.271592) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cbr (0.127975) | |
| eep (0.122564) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| eje (0.0988338) |