Ss1.1-Tra1-TCH01A120063.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGGCGGCTCTGGGAAGCTAAGGCGGCTGGCTGTTCGGGCGTCAGAACCTGCCCGAGC GCTCGGAGGCTGCAGACCTAGGCCCTCGGCGGCGGCGGCGGAGCGCGGTGAATCTAGGAT CCACCTGCCAAAAATGTGGCGGCTCTTGGCCACCCTCAGCTGCCTGGTGCTGCTGACCAG TGCCCGGGAGAGTCTGCATTTCCAGCCTCTGTCGGATGAGCTGGTCAATTTTATTAACAA GCAAAACACTACGTGGACGGCCGGACACAATTTCTACAATGTGGACCTGAGCTACGTGAA GAAGCTCTGTGGCACCTTCCTGGGTGGACCCAAGCTGCCCCAGAGAGCTGCTTTTGCTGC GGACATGATCCTGCCCAAAAGCTTCGATGCCCGGGAACAGTGGCCCAACTGCCCGACCAT CAAAGAGATCAGAGACCAGGGCTCCTGTGGCTCCTGCTGGGCGTTTGGGGCTGTGGAAGC CATCTCTGACCGGATCTGCATCCGCAGCAACGGGCGTGTCAACGTGGAGGTGTCCGCTGA GGACATGCTCACCTGTTGTGGCGACGAGTGTGGGGATGGCTGTAACGGTGGCTTTCCCTC TGGAGCCTGGAACTTCTGGACAAAGAAGGGCCTGGTGTCCGGGGGCCTCTATGACTCGCA TGTGGGTTGCAGGCCCTACTCCATCCCACCTTGCGAACACCACGTGAACGGCTCCCGGCC CCCGTGCACTGGGGAGGGGGACACCCCCAAGTGCAGCAAGATCTGCGAGCCTGGCTACAC CCCGTCCTACAAAGAAGACAAGCACTTCGGATGCAGCTCCTACAGCATCTCTAGGAACGA GAAGGAGATCATGGCGGAGATCTACAAAAACGGCCCGGTCGAGGGGGCCTTCACTGTGTA CTCGGACTTCCTGCAGTATAAGTCTGGAGTGTACCAGCACGTCACAGGAGACTTGATGGG AGGCCATGCCATCCGCATCCTGGGCTGGGGAGTGGAGAATGGCACCCCCTACTGGCTGGT CGGCAACTCCTGGAACACAGACTGGGGTGACAATGGCTTCTTTAAGATCCTCAGAGGACA GGATCACTGTGGCATCGAGTCAGAGATCGTGGCTGGAATCCCATGTACTCCCCATTTCTA GAAGTGCTGATCTGTTTGGCCGCCCCTGGGGCAGTTTTTCCCGCAGTATAGCCCTTGGGA TTGGGGGTGTGATGGGGGGATAGGAAATGTCTTTTATTCTTTGAGTTCAGATAAGATGCA GGCGTTTTTAGACAGGCCTCAAGGACTGGGTCGGGCCAAGCCTCGTGTCTGCCATCAGCA CTGTCTTCCAAGGAGACACAGCTAAGGCCTGATCAGGGAATGGACCGCTGTCACATCACA AACACCACAGAAGCCGCCGCTTCCGCCGCCACCCGGAGAACGCACCCCTCCTCAGACTAG CTGTGTCCTGCCCGGTCCCACTCACTTCTGCCACGCACCCTCCCACACTCCCAGCCGCAT CGCCTAGGAGCAGAACAGAGACCCCAGCATTCGTAGGTTTCCCAGGACTGGAAGGCCGAG CTCCTACCTGGACAGAGGCCCTTCTGAGCAGGCAGCTGCTAGACCTGGAGGAGGTTGAGG AGGTCTGGGGTGGCCCTGGGGAGAAAGCCACAGTCTGCCTGGGCCCCGCATCTGTCGAGC TTTGCGGAGTGGTTTACCCCATCTGGTCTTGTCCTTGGTGTGATTCCTTCTCAAATTCTA AGTCTTTATCACATGAGCACGTCGGGTGGTGGGAAGGGCTGTGCTGGTTCTACAGGTCAT CTCCTTAAAGCAATGAAATTAGTTTGCAGAGAAACCAGTTTTTACTGTTTAAAACCACTG CTTCACCCTGTCAGTGTAACAAGGATGACTGCCGATAAAATGCCTCTCCTTCAATGTGAC ATCTGCGTTCTGGTGCATCTGGAAGATGGTTTGTTGCTGTCTCTAGACTCGTAGCTGCTG TCTCTCCTTAGCCCCCAGAAGAATCATGTTCCCACGGGCCCTTGAAACGCTATCCAGGGA TGTCTTGCTTCAGTTGAGTGGAACAAAGTAAATACTTAATTTTAACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGGCGGCTCTGGGAAGCTAAGGCGGCTGGCTGTTCGGGCGTCAGAACCTGCCCGAGC GCTCGGAGGCTGCAGACCTAGGCCCTCGGCGGCGGCGGCGGAGCGCGGTGAATCTAGGAT CCACCTGCCAAAAATGTGGCGGCTCTTGGCCACCCTCAGCTGCCTGGTGCTGCTGACCAG TGCCCGGGAGAGTCTGCATTTCCAGCCTCTGTCGGATGAGCTGGTCAATTTTATTAACAA GCAAAACACTACGTGGACGGCCGGACACAATTTCTACAATGTGGACCTGAGCTACGTGAA GAAGCTCTGTGGCACCTTCCTGGGTGGACCCAAGCTGCCCCAGAGAGCTGCTTTTGCTGC GGACATGATCCTGCCCAAAAGCTTCGATGCCCGGGAACAGTGGCCCAACTGCCCGACCAT CAAAGAGATCAGAGACCAGGGCTCCTGTGGCTCCTGCTGGGCGTTTGGGGCTGTGGAAGC CATCTCTGACCGGATCTGCATCCGCAGCAACGGGCGTGTCAACGTGGAGGTGTCCGCTGA GGACATGCTCACCTGTTGTGGCGACGAGTGTGGGGATGGCTGTAACGGTGGCTTTCCCTC TGGAGCCTGGAACTTCTGGACAAAGAAGGGCCTGGTGTCCGGGGGCCTCTATGACTCGCA TGTGGGTTGCAGGCCCTACTCCATCCCACCTTGCGAACACCACGTGAACGGCTCCCGGCC CCCGTGCACTGGGGAGGGGGACACCCCCAAGTGCAGCAAGATCTGCGAGCCTGGCTACAC CCCGTCCTACAAAGAAGACAAGCACTTCGGATGCAGCTCCTACAGCATCTCTAGGAACGA GAAGGAGATCATGGCGGAGATCTACAAAAACGGCCCGGTCGAGGGGGCCTTCACTGTGTA CTCGGACTTCCTGCAGTATAAGTCTGGAGTGTACCAGCACGTCACAGGAGACTTGATGGG AGGCCATGCCATCCGCATCCTGGGCTGGGGAGTGGAGAATGGCACCCCCTACTGGCTGGT CGGCAACTCCTGGAACACAGACTGGGGTGACAATGGCTTCTTTAAGATCCTCAGAGGACA GGATCACTGTGGCATCGAGTCAGAGATCGTGGCTGGAATCCCATGTACTCCCCATTTCTA GAAGTGCTGATCTGTTTGGCCGCCCCTGGGGCAGTTTTTCCCGCAGTATAGCCCTTGGGA TTGGGGGTGTGATGGGGGGATAGGAAATGTCTTTTATTCTTTGAGTTCAGATAAGATGCA GGCGTTTTTAGACAGGCCTCAAGGACTGGGTCGGGCCAAGCCTCGTGTCTGCCATCAGCA CTGTCTTCCAAGGAGACACAGCTAAGGCCTGATCAGGGAATGGACCGCTGTCACATCACA AACACCACAGAAGCCGCCGCTTCCGCCGCCACCCGGAGAACGCACCCCTCCTCAGACTAG CTGTGTCCTGCCCGGTCCCACTCACTTCTGCCACGCACCCTCCCACACTCCCAGCCGCAT CGCCTAGGAGCAGAACAGAGACCCCAGCATTCGTAGGTTTCCCAGGACTGGAAGGCCGAG CTCCTACCTGGACAGAGGCCCTTCTGAGCAGGCAGCTGCTAGACCTGGAGGAGGTTGAGG AGGTCTGGGGTGGCCCTGGGGAGAAAGCCACAGTCTGCCTGGGCCCCGCATCTGTCGAGC TTTGCGGAGTGGTTTACCCCATCTGGTCTTGTCCTTGGTGTGATTCCTTCTCAAATTCTA AGTCTTTATCACATGAGCACGTCGGGTGGTGGGAAGGGCTGTGCTGGTTCTACAGGTCAT CTCCTTAAAGCAATGAAATTAGTTTGCAGAGAAACCAGTTTTTACTGTTTAAAACCACTG CTTCACCCTGTCAGTGTAACAAGGATGACTGCCGATAAAATGCCTCTCCTTCAATGTGAC ATCTGCGTTCTGGTGCATCTGGAAGATGGTTTGTTGCTGTCTCTAGACTCGTAGCTGCTG TCTCTCCTTAGCCCCCAGAAGAATCATGTTCCCACGGGCCCTTGAAACGCTATCCAGGGA TGTCTTGCTTCAGTTGAGTGGAACAAAGTAAATACTTAATTTTAACGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 107-260, gnl|bosTau2|chr8 (1761231-1761079) | |
| 107-260, gnl|canFam2|chr25 (29034139-29033994) | |
| 107-260, gnl|dasNov1|scaffold_12185 (49363-49486) | |
| 107-260, gnl|fr1|chrUn (276426341-276426208) | |
| 107-260, gnl|galGal2|chr3 (105277821-105277966) | |
| 107-260, gnl|hg17|chr8 (11748241-11748386) | |
| 107-260, gnl|Hg17|chr8 (11748398-11748246) | |
| 107-260, gnl|loxAfr1|scaffold_71731 (1877-2022) | |
| 107-260, gnl|mm7|chr14 (57997353-57997208) | |
| 107-260, gnl|Mm7|chr14 (57997194-57997346) | |
| 107-260, gnl|monDom2|scaffold_1 (97807189-97807334) | |
| 107-260, gnl|oryCun1|scaffold_118114 (3534-3389) | |
| 107-260, gnl|panTro1|chr7 (12407458-12407603) | |
| 107-260, gnl|rheMac2|chr8 (8889178-8889033) | |
| 107-260, gnl|rn3|chr15 (42430543-42430398) | |
| 107-260, gnl|tetNig1|chr5 (3498847-3498715) | |
| 107-260, gnl|xenTro1|scaffold_55 (2078070-2077927) | |
| 452-582, gnl|bosTau2|chr8 (1757553-1757424) | |
| 452-582, gnl|Hg17|chr8 (11744090-11743961) | |
| 452-582, gnl|Mm7|chr14 (58000278-58000407) | |
| 665-810, gnl|bosTau2|chr8 (1756261-1756116) | |
| 665-810, gnl|canFam2|chr25 (29039165-29039011) | |
| 665-810, gnl|canFam2|chr25 (29039157-29039054) | |
| 665-810, gnl|danRer3|chr7 (52709729-52709880) | |
| 665-810, gnl|dasNov1|scaffold_12185 (48896-49031) | |
| 665-810, gnl|dasNov1|scaffold_12185 (48903-49006) | |
| 665-810, gnl|echTel1|scaffold_214611 (3339-3186) | |
| 665-810, gnl|echTel1|scaffold_214611 (3332-3229) | |
| 665-810, gnl|fr1|chrUn (276431554-276431401) | |
| 665-810, gnl|fr1|chrUn (142008252-142008355) | |
| 665-810, gnl|galGal2|chr3 (105274989-105275145) | |
| 665-810, gnl|hg17|chr4 (29685563-29685651) | |
| 665-810, gnl|hg17|chr8 (11742591-11742744) | |
| 665-810, gnl|Hg17|chr8 (11742741-11742596) | |
| 665-810, gnl|loxAfr1|scaffold_14456 (39276-39432) | |
| 665-810, gnl|loxAfr1|scaffold_53835 (3810-3917) | |
| 665-810, gnl|mm7|chr14 (58002389-58002228) | |
| 665-810, gnl|Mm7|chr14 (58002229-58002374) | |
| 665-810, gnl|mm7|chr2 (55293435-55293331) | |
| 665-810, gnl|monDom2|scaffold_1 (97802408-97802562) | |
| 665-810, gnl|monDom2|scaffold_200 (405232-405126) | |
| 665-810, gnl|oryCun1|scaffold_118114 (7036-6883) | |
| 665-810, gnl|oryCun1|scaffold_118114 (7029-6926) | |
| 665-810, gnl|panTro1|chr3 (30268167-30268252) | |
| 665-810, gnl|panTro1|chr7 (12401808-12401961) | |
| 665-810, gnl|rheMac2|chr5 (24882041-24882130) | |
| 665-810, gnl|rheMac2|chr8 (8894683-8894530) | |
| 665-810, gnl|rn3|chr15 (42435551-42435391) | |
| 665-810, gnl|rn3|chr15 (42435537-42435448) | |
| 665-810, gnl|tetNig1|chr5 (3500123-3499970) | |
| 665-810, gnl|tetNig1|chr5 (3500119-3500013) | |
| 665-810, gnl|xenTro1|scaffold_55 (2081932-2081778) | |
| 1055-1813, gnl|bosTau2|chr8 (1753777-1752987) | |
| 1055-1813, gnl|Hg17|chr8 (11740141-11739408) | |
| 1055-1813, gnl|Mm7|chr14 (58006110-58006863) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-260, gnl|bosTau2|chr8 (1761231-1761079) | |
| 107-260, gnl|canFam2|chr25 (29034139-29033994) | |
| 107-260, gnl|dasNov1|scaffold_12185 (49363-49486) | |
| 107-260, gnl|fr1|chrUn (276426341-276426208) | |
| 107-260, gnl|galGal2|chr3 (105277821-105277966) | |
| 107-260, gnl|hg17|chr8 (11748241-11748386) | |
| 107-260, gnl|Hg17|chr8 (11748398-11748246) | |
| 107-260, gnl|loxAfr1|scaffold_71731 (1877-2022) | |
| 107-260, gnl|mm7|chr14 (57997353-57997208) | |
| 107-260, gnl|Mm7|chr14 (57997194-57997346) | |
| 107-260, gnl|monDom2|scaffold_1 (97807189-97807334) | |
| 107-260, gnl|oryCun1|scaffold_118114 (3534-3389) | |
| 107-260, gnl|panTro1|chr7 (12407458-12407603) | |
| 107-260, gnl|rheMac2|chr8 (8889178-8889033) | |
| 107-260, gnl|rn3|chr15 (42430543-42430398) | |
| 107-260, gnl|tetNig1|chr5 (3498847-3498715) | |
| 107-260, gnl|xenTro1|scaffold_55 (2078070-2077927) | |
| 452-582, gnl|bosTau2|chr8 (1757553-1757424) | |
| 452-582, gnl|Hg17|chr8 (11744090-11743961) | |
| 452-582, gnl|Mm7|chr14 (58000278-58000407) | |
| 665-810, gnl|bosTau2|chr8 (1756261-1756116) | |
| 665-810, gnl|canFam2|chr25 (29039165-29039011) | |
| 665-810, gnl|canFam2|chr25 (29039157-29039054) | |
| 665-810, gnl|danRer3|chr7 (52709729-52709880) | |
| 665-810, gnl|dasNov1|scaffold_12185 (48896-49031) | |
| 665-810, gnl|dasNov1|scaffold_12185 (48903-49006) | |
| 665-810, gnl|echTel1|scaffold_214611 (3339-3186) | |
| 665-810, gnl|echTel1|scaffold_214611 (3332-3229) | |
| 665-810, gnl|fr1|chrUn (276431554-276431401) | |
| 665-810, gnl|fr1|chrUn (142008252-142008355) | |
| 665-810, gnl|galGal2|chr3 (105274989-105275145) | |
| 665-810, gnl|hg17|chr4 (29685563-29685651) | |
| 665-810, gnl|hg17|chr8 (11742591-11742744) | |
| 665-810, gnl|Hg17|chr8 (11742741-11742596) | |
| 665-810, gnl|loxAfr1|scaffold_14456 (39276-39432) | |
| 665-810, gnl|loxAfr1|scaffold_53835 (3810-3917) | |
| 665-810, gnl|mm7|chr14 (58002389-58002228) | |
| 665-810, gnl|Mm7|chr14 (58002229-58002374) | |
| 665-810, gnl|mm7|chr2 (55293435-55293331) | |
| 665-810, gnl|monDom2|scaffold_1 (97802408-97802562) | |
| 665-810, gnl|monDom2|scaffold_200 (405232-405126) | |
| 665-810, gnl|oryCun1|scaffold_118114 (7036-6883) | |
| 665-810, gnl|oryCun1|scaffold_118114 (7029-6926) | |
| 665-810, gnl|panTro1|chr3 (30268167-30268252) | |
| 665-810, gnl|panTro1|chr7 (12401808-12401961) | |
| 665-810, gnl|rheMac2|chr5 (24882041-24882130) | |
| 665-810, gnl|rheMac2|chr8 (8894683-8894530) | |
| 665-810, gnl|rn3|chr15 (42435551-42435391) | |
| 665-810, gnl|rn3|chr15 (42435537-42435448) | |
| 665-810, gnl|tetNig1|chr5 (3500123-3499970) | |
| 665-810, gnl|tetNig1|chr5 (3500119-3500013) | |
| 665-810, gnl|xenTro1|scaffold_55 (2081932-2081778) | |
| 1055-1813, gnl|bosTau2|chr8 (1753777-1752987) | |
| 1055-1813, gnl|Hg17|chr8 (11740141-11739408) | |
| 1055-1813, gnl|Mm7|chr14 (58006110-58006863) |
| Expressed library(ies): 59 entry(ies) | More info |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
| ute (3.4524) | |
| clu (3.11079) | |
| cly (2.8954) | |
| cty (2.49792) | |
| nje (2.15696) | |
| cov (1.98229) | |
| cag (1.81433) | |
| jca (1.59544) | |
| cki (1.15664) | |
| cli (1.06968) | |
| col (0.975039) | |
| lnt (0.853849) | |
| csk (0.844476) | |
| csp (0.805932) | |
| fcc (0.593354) | |
| eje (0.593003) | |
| cga (0.558191) | |
| kid (0.518941) | |
| mcp (0.511945) | |
| eep (0.490256) | |
| mas (0.42061) | |
| cst (0.420109) | |
| amn (0.417711) | |
| che (0.408942) | |
| fli (0.405762) | |
| ste (0.405625) | |
| pla (0.401016) | |
| nbm (0.397298) | |
| jej (0.395687) | |
| sto (0.359648) | |
| rec (0.346141) | |
| fhi (0.339155) | |
| eli (0.303628) | |
| fat (0.294855) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| med (0.232504) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| mga (0.160205) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 59 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (3.4524) | |
| clu (3.11079) | |
| cly (2.8954) | |
| cty (2.49792) | |
| nje (2.15696) | |
| cov (1.98229) | |
| cag (1.81433) | |
| jca (1.59544) | |
| cki (1.15664) | |
| cli (1.06968) | |
| col (0.975039) | |
| lnt (0.853849) | |
| csk (0.844476) | |
| csp (0.805932) | |
| fcc (0.593354) | |
| eje (0.593003) | |
| cga (0.558191) | |
| kid (0.518941) | |
| mcp (0.511945) | |
| eep (0.490256) | |
| mas (0.42061) | |
| cst (0.420109) | |
| amn (0.417711) | |
| che (0.408942) | |
| fli (0.405762) | |
| ste (0.405625) | |
| pla (0.401016) | |
| nbm (0.397298) | |
| jej (0.395687) | |
| sto (0.359648) | |
| rec (0.346141) | |
| fhi (0.339155) | |
| eli (0.303628) | |
| fat (0.294855) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| nmm (0.265604) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| med (0.232504) | |
| cbl (0.229595) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nco (0.161734) | |
| mga (0.160205) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ecc (0.115035) |