Ss1.1-Tra1-TCH01A120090.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATACATCCAGCAAAGGTGAAAGAAGAATTCGAGTTCATACTTTGTGTTTGCCAGTAGTT TCAACTCTGAATGAAGTCTTTCTTGGAGCTGATGTTCAAGCAATTTCAGGGTTATTAGCC AACATGGCTGTTGACAGGTCTGTGACTGCCAGCCTGAGTGATGCTCGGGATGCCCTAGTG AATGCCGTCATAGACTCTCTTTCAGCTTATCGGTCTTCAGTCCTAAGCAACCAGCAGCCT GGACTCATGGTTCCTTTTTCTTTGCGGCTTTTCCCACTGTTTGTGTTGGCTCTCCTTAAA CAGAAGTCATTTCAGACTGGGACAAATGCACGTCTGGATGAGCGAATTTTTGCTATGTGT CAGGTGAAAAATCAGCCCTTGGTTTACCTTATGCTTACCACTCATCCCAATTTGTATAGA GTTGACAATCTCTCAGATGAGGGAGCAATCAACATCAACGATCGCACTATACCTCAGCCG CCTATTCTTCAGCTTTCAGTGGAGAAGCTGAGCAGGGATGGAGCTTTCCTCATGGATGCT GGCTCTGTACTAATGCTGTGGGTTGGAAGAAATTGTGGACACACTTTTCTCAGCCAAGTT CTAGGAGTTGAAAACTATGCATTAATTCCACAGACTATGACAGACCTTCCAGAACTTGAT ACACCAGAATCCGCTAGAACAATAGCTTTCATCTCCTGGCTTAGAGAGCAGAGACCGTTT TACCCAATACTTTATGTAATAAGGGATGAGAGTCCAATGAAAACGAACTTCCTTCAAAAC ATGGTGGAAGACAGAACAGAATCTGCATTATCATACTATGAATTCCTCTTGCATATACAA CAGCAAGTAAATAAATGAAGATTACTTGACTTAGTAATTTCTAAGGAAAGTCGCGATAAT GTGGAACACCTGAAAATGTGTAGTGCCCTCCTTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATACATCCAGCAAAGGTGAAAGAAGAATTCGAGTTCATACTTTGTGTTTGCCAGTAGTT TCAACTCTGAATGAAGTCTTTCTTGGAGCTGATGTTCAAGCAATTTCAGGGTTATTAGCC AACATGGCTGTTGACAGGTCTGTGACTGCCAGCCTGAGTGATGCTCGGGATGCCCTAGTG AATGCCGTCATAGACTCTCTTTCAGCTTATCGGTCTTCAGTCCTAAGCAACCAGCAGCCT GGACTCATGGTTCCTTTTTCTTTGCGGCTTTTCCCACTGTTTGTGTTGGCTCTCCTTAAA CAGAAGTCATTTCAGACTGGGACAAATGCACGTCTGGATGAGCGAATTTTTGCTATGTGT CAGGTGAAAAATCAGCCCTTGGTTTACCTTATGCTTACCACTCATCCCAATTTGTATAGA GTTGACAATCTCTCAGATGAGGGAGCAATCAACATCAACGATCGCACTATACCTCAGCCG CCTATTCTTCAGCTTTCAGTGGAGAAGCTGAGCAGGGATGGAGCTTTCCTCATGGATGCT GGCTCTGTACTAATGCTGTGGGTTGGAAGAAATTGTGGACACACTTTTCTCAGCCAAGTT CTAGGAGTTGAAAACTATGCATTAATTCCACAGACTATGACAGACCTTCCAGAACTTGAT ACACCAGAATCCGCTAGAACAATAGCTTTCATCTCCTGGCTTAGAGAGCAGAGACCGTTT TACCCAATACTTTATGTAATAAGGGATGAGAGTCCAATGAAAACGAACTTCCTTCAAAAC ATGGTGGAAGACAGAACAGAATCTGCATTATCATACTATGAATTCCTCTTGCATATACAA CAGCAAGTAAATAAATGAAGATTACTTGACTTAGTAATTTCTAAGGAAAGTCGCGATAAT GTGGAACACCTGAAAATGTGTAGTGCCCTCCTTTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 731-849, - strand, RNAz p=0.568808 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 731-849, - strand, RNAz p=0.568808 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 2-322, gnl|bosTau2|chr19 (55992701-55993020) | |
| 2-322, gnl|Hg17|chr17 (64602827-64602513) | |
| 2-322, gnl|Mm7|chr11 (51665806-51663894) | |
| 351-716, gnl|bosTau2|chr19 (55993336-55993679) | |
| 351-716, gnl|Hg17|chr17 (64602481-64602120) | |
| 731-936, gnl|bosTau2|chr7 (32411419-32411208) | |
| 731-936, gnl|canFam2|chr11 (25822083-25822244) | |
| 731-936, gnl|danRer3|chrNA (57630612-57630479) | |
| 731-936, gnl|dasNov1|scaffold_3433 (64451-64574) | |
| 731-936, gnl|echTel1|scaffold_289338 (39108-38963) | |
| 731-936, gnl|fr1|chrUn (138840075-138839932) | |
| 731-936, gnl|galGal2|chr13 (14649312-14649144) | |
| 731-936, gnl|hg17|chr5 (134088557-134088728) | |
| 731-936, gnl|Hg17|chr5 (134088557-134088764) | |
| 731-936, gnl|loxAfr1|scaffold_27512 (18311-18157) | |
| 731-936, gnl|mm7|chr11 (51652012-51651875) | |
| 731-936, gnl|Mm7|chr11 (51652010-51651840) | |
| 731-936, gnl|monDom2|scaffold_6 (98417583-98417747) | |
| 731-936, gnl|oryCun1|scaffold_168492 (12753-12578) | |
| 731-936, gnl|panTro1|chr4_random (12761624-12761795) | |
| 731-936, gnl|rheMac2|chr6 (131158533-131158704) | |
| 731-936, gnl|rn3|chr10 (37215844-37215717) | |
| 731-936, gnl|tetNig1|chr7 (7881498-7881359) | |
| 731-936, gnl|xenTro1|scaffold_336 (448967-448807) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-322, gnl|bosTau2|chr19 (55992701-55993020) | |
| 2-322, gnl|Hg17|chr17 (64602827-64602513) | |
| 2-322, gnl|Mm7|chr11 (51665806-51663894) | |
| 351-716, gnl|bosTau2|chr19 (55993336-55993679) | |
| 351-716, gnl|Hg17|chr17 (64602481-64602120) | |
| 731-936, gnl|bosTau2|chr7 (32411419-32411208) | |
| 731-936, gnl|canFam2|chr11 (25822083-25822244) | |
| 731-936, gnl|danRer3|chrNA (57630612-57630479) | |
| 731-936, gnl|dasNov1|scaffold_3433 (64451-64574) | |
| 731-936, gnl|echTel1|scaffold_289338 (39108-38963) | |
| 731-936, gnl|fr1|chrUn (138840075-138839932) | |
| 731-936, gnl|galGal2|chr13 (14649312-14649144) | |
| 731-936, gnl|hg17|chr5 (134088557-134088728) | |
| 731-936, gnl|Hg17|chr5 (134088557-134088764) | |
| 731-936, gnl|loxAfr1|scaffold_27512 (18311-18157) | |
| 731-936, gnl|mm7|chr11 (51652012-51651875) | |
| 731-936, gnl|Mm7|chr11 (51652010-51651840) | |
| 731-936, gnl|monDom2|scaffold_6 (98417583-98417747) | |
| 731-936, gnl|oryCun1|scaffold_168492 (12753-12578) | |
| 731-936, gnl|panTro1|chr4_random (12761624-12761795) | |
| 731-936, gnl|rheMac2|chr6 (131158533-131158704) | |
| 731-936, gnl|rn3|chr10 (37215844-37215717) | |
| 731-936, gnl|tetNig1|chr7 (7881498-7881359) | |
| 731-936, gnl|xenTro1|scaffold_336 (448967-448807) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| tes (0.207814) | |
| kid (0.129735) | |
| ret (0.128733) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| kid (0.129735) | |
| ret (0.128733) | |
| ecc (0.115035) | |
| cbl (0.114797) |