Ss1.1-Tra1-TCH01B010004.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTACCAGTGCTCATAGGCCTTTAATCTAGAACCGCCTGGCCACAC TCCATCACTGCCCCAAGACGGTGGGGAGGGATAAAGACGTATGGCCAGGTAGGGCACGCC AGGTCTGAGTCCAAGAGGGAAGGGCTCAGTCAGGCTGGGGCCTGGGCAGGGGGCTCCCGG CCCCAGGCGATGAGGGAGTTGCTGGCCTGGGCAAGCTCCGTGATGGATACCCGGCCCCGC TGTCGGATGAAGTTAGCCACGGCAGCCAGTTCCTCCGGGGTTATGTAGATGAACTTGCCC CGGTCGTCAATCACACCTGTCAGAGTGCCCTCGGCCAGCAGATCCTGGATGCGGTTTATG GTATCCTGAGTCCGCAGGCCCACCTGGGAGGCCAGGTCTTCCAAGAGCACGACCTTGGAC TGCTTAATGTAGTTGATGAACTCGGTCAGGAAGCTGTGGGACTCTTCCTCGGTCATGGTC TCGCCCACGCCCTCCTCCTCCACCACGAAGGACTCCTTCAGTTTCAGATACTCCTCATGC TCCCGCTGGGCCTGCTCCTCTCGGGCCCTCCTCTCCTCCTCCTCCTTCTGTTCCTCCTCC AGGCGAAGCCGCTCCTCCTCCTTCTTCCACTCTGCCTCCCGCTGGGACTCTAGGCGTTTC CGCTCCTCCCGCTCCGCCTCCTCTGCCTCACGCTGGGCTTTTCGTGCTTGTTTCTCCTCC AGCTTCCGTAGTTTTTTGGCTCCAATTTTCCCCGACAGGTGAGTTTCCACTGGCTTCTCG ATGATTTCTTCCTCCAGGGCTGGGATGATGACTTCCTCTTCATCCTCATCCACTTCTGCC CAAGCTACCCGCTGGGCTCGACGCTGGGCTTGCAGGCGGCTGCCCAGATCCCTCCGACGC CGAGGCCTGCCACCGGCTCTCTGCTCATCGAGCTCAGGCTGGGCCACTCGGCCTGCTACT CCCAGCTCCTCCTCATTGTTCAATGGCTCTCGGCCAGCTGCTGCTGCCCGGCCCCGCCTG CGGGTCAAGAAGAGGATAAAGCCAACGAGCAGAGCCGCCACCACCAAATACACCACGGGA GCCACCATGACGGTGGCTTCCAGGCGGAACCTGCGCGTCCACCCTGAGGCCCTGGATCTC CTAGGCCCCGCCCAATGCCCATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTACCAGTGCTCATAGGCCTTTAATCTAGAACCGCCTGGCCACAC TCCATCACTGCCCCAAGACGGTGGGGAGGGATAAAGACGTATGGCCAGGTAGGGCACGCC AGGTCTGAGTCCAAGAGGGAAGGGCTCAGTCAGGCTGGGGCCTGGGCAGGGGGCTCCCGG CCCCAGGCGATGAGGGAGTTGCTGGCCTGGGCAAGCTCCGTGATGGATACCCGGCCCCGC TGTCGGATGAAGTTAGCCACGGCAGCCAGTTCCTCCGGGGTTATGTAGATGAACTTGCCC CGGTCGTCAATCACACCTGTCAGAGTGCCCTCGGCCAGCAGATCCTGGATGCGGTTTATG GTATCCTGAGTCCGCAGGCCCACCTGGGAGGCCAGGTCTTCCAAGAGCACGACCTTGGAC TGCTTAATGTAGTTGATGAACTCGGTCAGGAAGCTGTGGGACTCTTCCTCGGTCATGGTC TCGCCCACGCCCTCCTCCTCCACCACGAAGGACTCCTTCAGTTTCAGATACTCCTCATGC TCCCGCTGGGCCTGCTCCTCTCGGGCCCTCCTCTCCTCCTCCTCCTTCTGTTCCTCCTCC AGGCGAAGCCGCTCCTCCTCCTTCTTCCACTCTGCCTCCCGCTGGGACTCTAGGCGTTTC CGCTCCTCCCGCTCCGCCTCCTCTGCCTCACGCTGGGCTTTTCGTGCTTGTTTCTCCTCC AGCTTCCGTAGTTTTTTGGCTCCAATTTTCCCCGACAGGTGAGTTTCCACTGGCTTCTCG ATGATTTCTTCCTCCAGGGCTGGGATGATGACTTCCTCTTCATCCTCATCCACTTCTGCC CAAGCTACCCGCTGGGCTCGACGCTGGGCTTGCAGGCGGCTGCCCAGATCCCTCCGACGC CGAGGCCTGCCACCGGCTCTCTGCTCATCGAGCTCAGGCTGGGCCACTCGGCCTGCTACT CCCAGCTCCTCCTCATTGTTCAATGGCTCTCGGCCAGCTGCTGCTGCCCGGCCCCGCCTG CGGGTCAAGAAGAGGATAAAGCCAACGAGCAGAGCCGCCACCACCAAATACACCACGGGA GCCACCATGACGGTGGCTTCCAGGCGGAACCTGCGCGTCCACCCTGAGGCCCTGGATCTC CTAGGCCCCGCCCAATGCCCATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 96-254, + strand, RNAz p=0.980899 | |
| 466-586, - strand, RNAz p=0.582926 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 96-254, + strand, RNAz p=0.980899 | |
| 466-586, - strand, RNAz p=0.582926 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 18-320, gnl|bosTau2|chr13 (34563956-34564257) | |
| 18-320, gnl|Hg17|chr20 (3119168-3119469) | |
| 18-320, gnl|Mm7|chr2 (130394886-130395179) | |
| 466-586, gnl|bosTau2|chr13 (34568080-34568200) | |
| 466-586, gnl|canFam2|chr24 (21089884-21089750) | |
| 466-586, gnl|echTel1|scaffold_294986 (7476-7614) | |
| 466-586, gnl|fr1|chrUn (248274872-248275008) | |
| 466-586, gnl|hg17|chr20 (3123873-3124012) | |
| 466-586, gnl|Hg17|chr20 (3123881-3124001) | |
| 466-586, gnl|mm7|chr2 (130399438-130399577) | |
| 466-586, gnl|Mm7|chr2 (130399446-130399566) | |
| 466-586, gnl|monDom2|scaffold_10 (49103024-49103165) | |
| 466-586, gnl|oryCun1|scaffold_188305 (1092-954) | |
| 466-586, gnl|panTro1|chr21 (3104901-3105040) | |
| 466-586, gnl|rheMac2|chr10 (36503785-36503924) | |
| 466-586, gnl|rn3|chr3 (118194474-118194613) | |
| 466-586, gnl|tetNig1|chr3 (7347317-7347446) | |
| 466-586, gnl|xenTro1|scaffold_140 (112956-112814) | |
| 662-809, gnl|bosTau2|chr13 (34571765-34571913) | |
| 662-809, gnl|Hg17|chr20 (3128963-3129111) | |
| 662-809, gnl|Mm7|chr2 (130402906-130403053) | |
| 998-1162, gnl|bosTau2|chr13 (34574421-34574585) | |
| 998-1162, gnl|Hg17|chr20 (3133183-3133336) | |
| 998-1162, gnl|Mm7|chr2 (130405328-130405491) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-320, gnl|bosTau2|chr13 (34563956-34564257) | |
| 18-320, gnl|Hg17|chr20 (3119168-3119469) | |
| 18-320, gnl|Mm7|chr2 (130394886-130395179) | |
| 466-586, gnl|bosTau2|chr13 (34568080-34568200) | |
| 466-586, gnl|canFam2|chr24 (21089884-21089750) | |
| 466-586, gnl|echTel1|scaffold_294986 (7476-7614) | |
| 466-586, gnl|fr1|chrUn (248274872-248275008) | |
| 466-586, gnl|hg17|chr20 (3123873-3124012) | |
| 466-586, gnl|Hg17|chr20 (3123881-3124001) | |
| 466-586, gnl|mm7|chr2 (130399438-130399577) | |
| 466-586, gnl|Mm7|chr2 (130399446-130399566) | |
| 466-586, gnl|monDom2|scaffold_10 (49103024-49103165) | |
| 466-586, gnl|oryCun1|scaffold_188305 (1092-954) | |
| 466-586, gnl|panTro1|chr21 (3104901-3105040) | |
| 466-586, gnl|rheMac2|chr10 (36503785-36503924) | |
| 466-586, gnl|rn3|chr3 (118194474-118194613) | |
| 466-586, gnl|tetNig1|chr3 (7347317-7347446) | |
| 466-586, gnl|xenTro1|scaffold_140 (112956-112814) | |
| 662-809, gnl|bosTau2|chr13 (34571765-34571913) | |
| 662-809, gnl|Hg17|chr20 (3128963-3129111) | |
| 662-809, gnl|Mm7|chr2 (130402906-130403053) | |
| 998-1162, gnl|bosTau2|chr13 (34574421-34574585) | |
| 998-1162, gnl|Hg17|chr20 (3133183-3133336) | |
| 998-1162, gnl|Mm7|chr2 (130405328-130405491) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nms (0.427716) | |
| med (0.348756) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| med (0.348756) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cly (0.120642) | |
| clu (0.119646) |