Ss1.1-Tra1-TCH01B020029.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACGAGTTCCGGAGCCCTCCAACCTTTGCTCCAGCGATCATGGCTGCCGAGGATGTGGC GGCTACCGGCGCCGACCCGAGCGAGCTAGAGGGCGGCGGGCTGCTGCATGAGATTTTCAC GTCGCCGCTCAACCTGCTGCTGCTCGGCCTCTGCATCTTCCTGCTCTACAAGATCGTGCG CGGGGACCAGCCGGCGGCCAGCGATAGCGACGACGACGAGCCGCCCCCGCTGCCCCGCCT TAAGCGGCGCGACTTCACCCCTGCCGAGCTGCGTCGCTTCGACGGCGTCCAGGACCCGCG TATACTCATGGCCATCAACGGCAAGGTGTTCGACGTGACCAAAGGCCGCAAGTTCTACGG GCCCGAGGGGCCGTACGGGGTCTTTGCTGGAAGAGACGCATCCAGGGGCCTGGCCACGTT TTGCCTGGATAAGGAAGCCCTGAAGGACGAGTATGATGACCTTTCTGACCTCACTCCTGC CCAGCAGGAGACCCTGAATGACTGGGACTCTCAGTTCACTTTCAAGTACCATCACGTGGG CAAACTGCTGAAGGAGGGGGAGGAGCCCACCGTGTACTCAGATGAGGAAGAGCCCAAAGA TGAGAGCGCTCGGAAAAATGATTAAAGCGTTCGGTGGAAGCATATCTATTTTTGTATTTT GCAGAATCATTTGTAACATTCCAGTCTGTCTCTAAAACATGGTGATTTCAATATTTAGAA GAGTTTTGAACTTGCTGTACATTTTTTTAATTAACATCACTAGTGACAGTGATAAAGCTA ACCTCTGTCTTAGACTGCATGATGTGTTTGTGTGTCACAAATCCAGAACGTGAACTGCAG TGCTGTAATACAGACGTTATTACTGTTTTTTCTTCTATCCATAGTTAGTACAGGCTGAAT TTGGATTCGTTTTTTGCTTGAGAGACAGGTAAGACGTGGGTATTTCCCCCCAAACAGGTA AAAATGTTAAACGTGCAAAGTCCTTCAAGCACCAAGGAACAGGGGATCAACTTTTAGTCG TGAGGTTCTCTAAATGAGACAGCAAATCCCTTATTTCTCAATTGACCCAACTGCATGATT TCTGTTTGATCTACCTCTAAAGCAAATCTGCAGTGTTCCAAAGGCTTTGGTATCGATTAG AGAGCTCTCCAGAAACAAAATGAAATCTCAAAGCTGGGGCTCTGTCGGAAGCAGTTTCCT TGCCGTATTTTCATACTGCATCGCTGTCCTTGTCCACCCTGGGACACTCAGAGGCCCTCA CCAACGTAGTCATCCACGGTGAGGACTAAAGCGGGACCTGAGCACCCAGTGGCGAGCCCT GGGGACAAAATCAGCCGGCTTGCCTAGAAACCGAAATATACGAGGAAGATTGAAGTCCTA TCTTCCCTTTCCCCGTGTTCACGGCGGGGCAGTGGTTCTTTCACACGATTGGACAGAGAG AGGGGCCCCGCAGAGTAGGACCGGGCGGTGGCTCTCCTAAGAGCCTCCCCCCACACCCCC AAAGCTCAAGGGAACAGTACGCATTACCAGCCAGGCGGTTTTTAAAGTAAAGCGTATTCA TAAAGTGAACAGTTACTCTTCTGTTACAAAACTTGTAGCCACTGCAAGAGTAGTAAGCGT CTTGGTCTTTGATATTGGTCGTCTTTTGGTTAACAATAAACTTAGCTGAAGTAGACTGTA CAGTTGTTTGAATTGTAAAAGTATTATATGAACAACTAGTGAGGTTTCAAACTCTTGTAA TTGTAGTTGAATAGTCATTGTATTTTTCTTGTGAACCGTGTTTAATGGTTTTACCTCAAA TCAGAAAACAAAATGAAGTGCTTTGGTCAGTTAATAAAATGGTTTTACCCGGTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACGAGTTCCGGAGCCCTCCAACCTTTGCTCCAGCGATCATGGCTGCCGAGGATGTGGC GGCTACCGGCGCCGACCCGAGCGAGCTAGAGGGCGGCGGGCTGCTGCATGAGATTTTCAC GTCGCCGCTCAACCTGCTGCTGCTCGGCCTCTGCATCTTCCTGCTCTACAAGATCGTGCG CGGGGACCAGCCGGCGGCCAGCGATAGCGACGACGACGAGCCGCCCCCGCTGCCCCGCCT TAAGCGGCGCGACTTCACCCCTGCCGAGCTGCGTCGCTTCGACGGCGTCCAGGACCCGCG TATACTCATGGCCATCAACGGCAAGGTGTTCGACGTGACCAAAGGCCGCAAGTTCTACGG GCCCGAGGGGCCGTACGGGGTCTTTGCTGGAAGAGACGCATCCAGGGGCCTGGCCACGTT TTGCCTGGATAAGGAAGCCCTGAAGGACGAGTATGATGACCTTTCTGACCTCACTCCTGC CCAGCAGGAGACCCTGAATGACTGGGACTCTCAGTTCACTTTCAAGTACCATCACGTGGG CAAACTGCTGAAGGAGGGGGAGGAGCCCACCGTGTACTCAGATGAGGAAGAGCCCAAAGA TGAGAGCGCTCGGAAAAATGATTAAAGCGTTCGGTGGAAGCATATCTATTTTTGTATTTT GCAGAATCATTTGTAACATTCCAGTCTGTCTCTAAAACATGGTGATTTCAATATTTAGAA GAGTTTTGAACTTGCTGTACATTTTTTTAATTAACATCACTAGTGACAGTGATAAAGCTA ACCTCTGTCTTAGACTGCATGATGTGTTTGTGTGTCACAAATCCAGAACGTGAACTGCAG TGCTGTAATACAGACGTTATTACTGTTTTTTCTTCTATCCATAGTTAGTACAGGCTGAAT TTGGATTCGTTTTTTGCTTGAGAGACAGGTAAGACGTGGGTATTTCCCCCCAAACAGGTA AAAATGTTAAACGTGCAAAGTCCTTCAAGCACCAAGGAACAGGGGATCAACTTTTAGTCG TGAGGTTCTCTAAATGAGACAGCAAATCCCTTATTTCTCAATTGACCCAACTGCATGATT TCTGTTTGATCTACCTCTAAAGCAAATCTGCAGTGTTCCAAAGGCTTTGGTATCGATTAG AGAGCTCTCCAGAAACAAAATGAAATCTCAAAGCTGGGGCTCTGTCGGAAGCAGTTTCCT TGCCGTATTTTCATACTGCATCGCTGTCCTTGTCCACCCTGGGACACTCAGAGGCCCTCA CCAACGTAGTCATCCACGGTGAGGACTAAAGCGGGACCTGAGCACCCAGTGGCGAGCCCT GGGGACAAAATCAGCCGGCTTGCCTAGAAACCGAAATATACGAGGAAGATTGAAGTCCTA TCTTCCCTTTCCCCGTGTTCACGGCGGGGCAGTGGTTCTTTCACACGATTGGACAGAGAG AGGGGCCCCGCAGAGTAGGACCGGGCGGTGGCTCTCCTAAGAGCCTCCCCCCACACCCCC AAAGCTCAAGGGAACAGTACGCATTACCAGCCAGGCGGTTTTTAAAGTAAAGCGTATTCA TAAAGTGAACAGTTACTCTTCTGTTACAAAACTTGTAGCCACTGCAAGAGTAGTAAGCGT CTTGGTCTTTGATATTGGTCGTCTTTTGGTTAACAATAAACTTAGCTGAAGTAGACTGTA CAGTTGTTTGAATTGTAAAAGTATTATATGAACAACTAGTGAGGTTTCAAACTCTTGTAA TTGTAGTTGAATAGTCATTGTATTTTTCTTGTGAACCGTGTTTAATGGTTTTACCTCAAA TCAGAAAACAAAATGAAGTGCTTTGGTCAGTTAATAAAATGGTTTTACCCGGTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 20-363, gnl|bosTau2|chrX (1473016-1473359) | |
| 20-363, gnl|Hg17|chrX (118152188-118152534) | |
| 20-363, gnl|Mm7|chrX (31358029-31358375) | |
| 365-527, gnl|bosTau2|chrX (1477229-1477391) | |
| 365-527, gnl|canFam2|chrX (94400322-94400529) | |
| 365-527, gnl|danRer3|chr21 (28718948-28718741) | |
| 365-527, gnl|dasNov1|scaffold_16203 (48438-48235) | |
| 365-527, gnl|echTel1|scaffold_98306 (813-969) | |
| 365-527, gnl|fr1|chrUn (215050042-215050206) | |
| 365-527, gnl|galGal2|chr4 (16355200-16354999) | |
| 365-527, gnl|hg17|chrX (118156141-118156342) | |
| 365-527, gnl|Hg17|chrX (118156153-118156315) | |
| 365-527, gnl|loxAfr1|scaffold_33608 (3116-3322) | |
| 365-527, gnl|mm7|chrX (31361866-31362073) | |
| 365-527, gnl|Mm7|chrX (31361883-31362045) | |
| 365-527, gnl|monDom2|scaffold_156 (683177-683385) | |
| 365-527, gnl|oryCun1|scaffold_114937 (793-917) | |
| 365-527, gnl|panTro1|chrX (122171013-122171214) | |
| 365-527, gnl|rheMac2|chrX (117507949-117508150) | |
| 365-527, gnl|rn3|chrX (8275293-8275086) | |
| 365-527, gnl|tetNig1|chr7 (10262688-10262526) | |
| 365-527, gnl|xenTro1|scaffold_263 (731430-731242) | |
| 573-1111, gnl|bosTau2|chr20 (33402176-33401647) | |
| 573-1111, gnl|Hg17|chrX (118159047-118159561) | |
| 573-1111, gnl|Mm7|chrX (31364602-31365134) | |
| 1624-1867, gnl|bosTau2|chr13 (47495296-47495543) | |
| 1624-1867, gnl|Hg17|chrX (118160093-118160306) | |
| 1624-1867, gnl|Mm7|chrX (154382609-154382334) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-363, gnl|bosTau2|chrX (1473016-1473359) | |
| 20-363, gnl|Hg17|chrX (118152188-118152534) | |
| 20-363, gnl|Mm7|chrX (31358029-31358375) | |
| 365-527, gnl|bosTau2|chrX (1477229-1477391) | |
| 365-527, gnl|canFam2|chrX (94400322-94400529) | |
| 365-527, gnl|danRer3|chr21 (28718948-28718741) | |
| 365-527, gnl|dasNov1|scaffold_16203 (48438-48235) | |
| 365-527, gnl|echTel1|scaffold_98306 (813-969) | |
| 365-527, gnl|fr1|chrUn (215050042-215050206) | |
| 365-527, gnl|galGal2|chr4 (16355200-16354999) | |
| 365-527, gnl|hg17|chrX (118156141-118156342) | |
| 365-527, gnl|Hg17|chrX (118156153-118156315) | |
| 365-527, gnl|loxAfr1|scaffold_33608 (3116-3322) | |
| 365-527, gnl|mm7|chrX (31361866-31362073) | |
| 365-527, gnl|Mm7|chrX (31361883-31362045) | |
| 365-527, gnl|monDom2|scaffold_156 (683177-683385) | |
| 365-527, gnl|oryCun1|scaffold_114937 (793-917) | |
| 365-527, gnl|panTro1|chrX (122171013-122171214) | |
| 365-527, gnl|rheMac2|chrX (117507949-117508150) | |
| 365-527, gnl|rn3|chrX (8275293-8275086) | |
| 365-527, gnl|tetNig1|chr7 (10262688-10262526) | |
| 365-527, gnl|xenTro1|scaffold_263 (731430-731242) | |
| 573-1111, gnl|bosTau2|chr20 (33402176-33401647) | |
| 573-1111, gnl|Hg17|chrX (118159047-118159561) | |
| 573-1111, gnl|Mm7|chrX (31364602-31365134) | |
| 1624-1867, gnl|bosTau2|chr13 (47495296-47495543) | |
| 1624-1867, gnl|Hg17|chrX (118160093-118160306) | |
| 1624-1867, gnl|Mm7|chrX (154382609-154382334) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| cki (1.48711) | |
| ebs (0.828108) | |
| jej (0.791374) | |
| nje (0.66368) | |
| kid (0.648677) | |
| pgl (0.592417) | |
| cje (0.495704) | |
| eep (0.490256) | |
| cbe (0.478469) | |
| ece (0.45861) | |
| spc (0.453463) | |
| lun (0.451467) | |
| amn (0.417711) | |
| cov (0.396458) | |
| fcc (0.39557) | |
| cmu (0.372787) | |
| sto (0.359648) | |
| gul (0.355177) | |
| cut (0.339847) | |
| mga (0.32041) | |
| eje (0.296501) | |
| ski (0.29347) | |
| cte (0.29274) | |
| pty (0.285429) | |
| fce (0.271592) | |
| ova (0.258264) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fli (0.202881) | |
| aor (0.195274) | |
| nep (0.183925) | |
| ton (0.1755) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| med (0.116252) | |
| cbl (0.114797) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (1.48711) | |
| ebs (0.828108) | |
| jej (0.791374) | |
| nje (0.66368) | |
| kid (0.648677) | |
| pgl (0.592417) | |
| cje (0.495704) | |
| eep (0.490256) | |
| cbe (0.478469) | |
| ece (0.45861) | |
| spc (0.453463) | |
| lun (0.451467) | |
| amn (0.417711) | |
| cov (0.396458) | |
| fcc (0.39557) | |
| cmu (0.372787) | |
| sto (0.359648) | |
| gul (0.355177) | |
| cut (0.339847) | |
| mga (0.32041) | |
| eje (0.296501) | |
| ski (0.29347) | |
| cte (0.29274) | |
| pty (0.285429) | |
| fce (0.271592) | |
| ova (0.258264) | |
| bla (0.248694) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fli (0.202881) | |
| aor (0.195274) | |
| nep (0.183925) | |
| ton (0.1755) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| med (0.116252) | |
| cbl (0.114797) |