Ss1.1-Tra1-TCH01B020050.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATCTCAGCCCACGACCAGTTCAAGTCGACGCTGCCGGACGCCGACCGGGAACGGGAGG CCATCCTGGCCATTCACAAGGAGGCCCAGAGGATCGCCGAGAGCAACCACATCAAACTCT CGGGCAGCAACCCCTACACCACTGTCACCCCCCAGATCATCAACTCCAAGTGGGAGAAGG TGCAGCAGCTGGTGCCCAAGCGGGACCACGCCCTCCTCGAGGAGCAGAGCAAACAGCAGT CCAACGAGCACCTCCGCCGCCAGTTCGCCAGCCAGGCCAACATCGTGGGGCCCTGGATCC AGACCAAGATGGAGGAGATCGGCCGCATCTCCATCGAGATGAACGGGACGCTGGAAGACC AGCTGAGCCACCTGAAGCAGTACGAGCGCAGCATTGTGGACTACAAGCCGAACCTGGACC TGCTGGAGCAGCAGCATCAGCTCATCCAGGAGGCCCTCATCTTTGACAACAAACACACCA ACTACACCATGGAGCACATCCGCGTGGGCTGGGAGCAGCTGCTCACCACCATCGCCCGCA CCATCAACGAGGTCGAGAACCAGATCCTCACCCGCGACGCCAAGGGCATCAGCCAAGAGC AGATGCAGGAGTTCCGGGCGTCCTTCAATCACTTCGACAAGGACCACGGCGGGGCGCTGG GGCCGGAGGAGTTCAAGGCCTGCCTCATCAGCCTGGGCTACGACGTGGAGAATGACCGGC AGGGCGATGCCGAGTTCAACCGCATCATGAGCGTGGTCGACCCCAACCACAGCGGCCTCG TGACCTTCCAAGCCTTCATCGACTTCATGTCGAGGGAGACCACAGACACCGACACAGCCG ACCAGGTCATCGCCTCCTTCAAGGTCCTGGCAGGCGACAAGAACTTCATCACGGCGGAGG AGCTGCGGAGAGAGCTGCCGCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGCGCCGT ACCAGGGCCCCGACGCTGTGCCCGGCGCCCTCGACTACAAGTCTTTCTCCACAGCCCTGT ACGGCGAGAGCGACCTGTGAGGGCCCCCCCCCCCCCACCGAAAACCCCTGACCGGATGGC CCTTGTCACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATCTCAGCCCACGACCAGTTCAAGTCGACGCTGCCGGACGCCGACCGGGAACGGGAGG CCATCCTGGCCATTCACAAGGAGGCCCAGAGGATCGCCGAGAGCAACCACATCAAACTCT CGGGCAGCAACCCCTACACCACTGTCACCCCCCAGATCATCAACTCCAAGTGGGAGAAGG TGCAGCAGCTGGTGCCCAAGCGGGACCACGCCCTCCTCGAGGAGCAGAGCAAACAGCAGT CCAACGAGCACCTCCGCCGCCAGTTCGCCAGCCAGGCCAACATCGTGGGGCCCTGGATCC AGACCAAGATGGAGGAGATCGGCCGCATCTCCATCGAGATGAACGGGACGCTGGAAGACC AGCTGAGCCACCTGAAGCAGTACGAGCGCAGCATTGTGGACTACAAGCCGAACCTGGACC TGCTGGAGCAGCAGCATCAGCTCATCCAGGAGGCCCTCATCTTTGACAACAAACACACCA ACTACACCATGGAGCACATCCGCGTGGGCTGGGAGCAGCTGCTCACCACCATCGCCCGCA CCATCAACGAGGTCGAGAACCAGATCCTCACCCGCGACGCCAAGGGCATCAGCCAAGAGC AGATGCAGGAGTTCCGGGCGTCCTTCAATCACTTCGACAAGGACCACGGCGGGGCGCTGG GGCCGGAGGAGTTCAAGGCCTGCCTCATCAGCCTGGGCTACGACGTGGAGAATGACCGGC AGGGCGATGCCGAGTTCAACCGCATCATGAGCGTGGTCGACCCCAACCACAGCGGCCTCG TGACCTTCCAAGCCTTCATCGACTTCATGTCGAGGGAGACCACAGACACCGACACAGCCG ACCAGGTCATCGCCTCCTTCAAGGTCCTGGCAGGCGACAAGAACTTCATCACGGCGGAGG AGCTGCGGAGAGAGCTGCCGCCCGACCAGGCCGAGTACTGCATCGCCCGCATGGCGCCGT ACCAGGGCCCCGACGCTGTGCCCGGCGCCCTCGACTACAAGTCTTTCTCCACAGCCCTGT ACGGCGAGAGCGACCTGTGAGGGCCCCCCCCCCCCCACCGAAAACCCCTGACCGGATGGC CCTTGTCACAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr10 (55166812-55166631) | |
| 1-182, gnl|canFam2|chr8 (45757873-45758067) | |
| 1-182, gnl|danRer3|chr13 (38990710-38990904) | |
| 1-182, gnl|dasNov1|scaffold_45991 (3982-4179) | |
| 1-182, gnl|echTel1|scaffold_315923 (51445-51248) | |
| 1-182, gnl|fr1|chrUn (2848312-2848119) | |
| 1-182, gnl|galGal2|chr5 (25194852-25194655) | |
| 1-182, gnl|hg17|chr14 (68419338-68419535) | |
| 1-182, gnl|Hg17|chr14 (68419521-68419340) | |
| 1-182, gnl|mm7|chr12 (78137459-78137656) | |
| 1-182, gnl|Mm7|chr12 (78137642-78137461) | |
| 1-182, gnl|monDom2|scaffold_8 (84924455-84924652) | |
| 1-182, gnl|oryCun1|scaffold_190292 (22400-22597) | |
| 1-182, gnl|panTro1|chr15 (68086048-68086245) | |
| 1-182, gnl|rheMac2|chr7 (131992783-131992980) | |
| 1-182, gnl|rn3|chr6 (103198876-103199073) | |
| 1-182, gnl|tetNig1|chrUn_random (130118553-130118746) | |
| 1-182, gnl|xenTro1|scaffold_117 (661173-660972) | |
| 313-494, gnl|bosTau2|chr10 (55165238-55165057) | |
| 313-494, gnl|canFam2|chr8 (45756097-45756296) | |
| 313-494, gnl|danRer3|chr13 (38988085-38988270) | |
| 313-494, gnl|dasNov1|scaffold_89417 (5343-5550) | |
| 313-494, gnl|echTel1|scaffold_204200 (832-1022) | |
| 313-494, gnl|fr1|chrUn (2848909-2848720) | |
| 313-494, gnl|galGal2|chr5 (25196903-25196713) | |
| 313-494, gnl|hg17|chr14 (68417265-68417464) | |
| 313-494, gnl|Hg17|chr14 (68417461-68417280) | |
| 313-494, gnl|loxAfr1|scaffold_9916 (7107-7306) | |
| 313-494, gnl|mm7|chr12 (78135952-78136151) | |
| 313-494, gnl|Mm7|chr12 (78136148-78135967) | |
| 313-494, gnl|monDom2|scaffold_8 (84921881-84922089) | |
| 313-494, gnl|oryCun1|scaffold_187628 (3754-3556) | |
| 313-494, gnl|panTro1|chr15 (68083963-68084162) | |
| 313-494, gnl|rheMac2|chr7 (131990714-131990913) | |
| 313-494, gnl|rn3|chr6 (103197430-103197629) | |
| 313-494, gnl|tetNig1|chrUn_random (130118071-130118270) | |
| 313-494, gnl|xenTro1|scaffold_117 (662079-661886) | |
| 880-1050, gnl|bosTau2|chr10 (55159782-55159611) | |
| 880-1050, gnl|canFam2|chr8 (45750580-45750768) | |
| 880-1050, gnl|danRer3|chr13 (38979370-38979560) | |
| 880-1050, gnl|dasNov1|scaffold_89417 (3838-4026) | |
| 880-1050, gnl|echTel1|scaffold_57341 (1121-952) | |
| 880-1050, gnl|fr1|chrUn (2851070-2850867) | |
| 880-1050, gnl|galGal2|chr5 (25204308-25204108) | |
| 880-1050, gnl|hg17|chr14 (68411308-68411501) | |
| 880-1050, gnl|Hg17|chr14 (68411489-68411318) | |
| 880-1050, gnl|loxAfr1|scaffold_9916 (1862-2041) | |
| 880-1050, gnl|mm7|chr12 (78131305-78131498) | |
| 880-1050, gnl|Mm7|chr12 (78131486-78131318) | |
| 880-1050, gnl|monDom2|scaffold_8 (84911603-84911791) | |
| 880-1050, gnl|oryCun1|scaffold_186865 (36811-36618) | |
| 880-1050, gnl|panTro1|chr15 (68077992-68078185) | |
| 880-1050, gnl|rheMac2|chr7 (131984741-131984934) | |
| 880-1050, gnl|rn3|chr6 (103192096-103192289) | |
| 880-1050, gnl|tetNig1|chrUn_random (21827516-21827342) | |
| 880-1050, gnl|xenTro1|scaffold_117 (668850-668671) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr10 (55166812-55166631) | |
| 1-182, gnl|canFam2|chr8 (45757873-45758067) | |
| 1-182, gnl|danRer3|chr13 (38990710-38990904) | |
| 1-182, gnl|dasNov1|scaffold_45991 (3982-4179) | |
| 1-182, gnl|echTel1|scaffold_315923 (51445-51248) | |
| 1-182, gnl|fr1|chrUn (2848312-2848119) | |
| 1-182, gnl|galGal2|chr5 (25194852-25194655) | |
| 1-182, gnl|hg17|chr14 (68419338-68419535) | |
| 1-182, gnl|Hg17|chr14 (68419521-68419340) | |
| 1-182, gnl|mm7|chr12 (78137459-78137656) | |
| 1-182, gnl|Mm7|chr12 (78137642-78137461) | |
| 1-182, gnl|monDom2|scaffold_8 (84924455-84924652) | |
| 1-182, gnl|oryCun1|scaffold_190292 (22400-22597) | |
| 1-182, gnl|panTro1|chr15 (68086048-68086245) | |
| 1-182, gnl|rheMac2|chr7 (131992783-131992980) | |
| 1-182, gnl|rn3|chr6 (103198876-103199073) | |
| 1-182, gnl|tetNig1|chrUn_random (130118553-130118746) | |
| 1-182, gnl|xenTro1|scaffold_117 (661173-660972) | |
| 313-494, gnl|bosTau2|chr10 (55165238-55165057) | |
| 313-494, gnl|canFam2|chr8 (45756097-45756296) | |
| 313-494, gnl|danRer3|chr13 (38988085-38988270) | |
| 313-494, gnl|dasNov1|scaffold_89417 (5343-5550) | |
| 313-494, gnl|echTel1|scaffold_204200 (832-1022) | |
| 313-494, gnl|fr1|chrUn (2848909-2848720) | |
| 313-494, gnl|galGal2|chr5 (25196903-25196713) | |
| 313-494, gnl|hg17|chr14 (68417265-68417464) | |
| 313-494, gnl|Hg17|chr14 (68417461-68417280) | |
| 313-494, gnl|loxAfr1|scaffold_9916 (7107-7306) | |
| 313-494, gnl|mm7|chr12 (78135952-78136151) | |
| 313-494, gnl|Mm7|chr12 (78136148-78135967) | |
| 313-494, gnl|monDom2|scaffold_8 (84921881-84922089) | |
| 313-494, gnl|oryCun1|scaffold_187628 (3754-3556) | |
| 313-494, gnl|panTro1|chr15 (68083963-68084162) | |
| 313-494, gnl|rheMac2|chr7 (131990714-131990913) | |
| 313-494, gnl|rn3|chr6 (103197430-103197629) | |
| 313-494, gnl|tetNig1|chrUn_random (130118071-130118270) | |
| 313-494, gnl|xenTro1|scaffold_117 (662079-661886) | |
| 880-1050, gnl|bosTau2|chr10 (55159782-55159611) | |
| 880-1050, gnl|canFam2|chr8 (45750580-45750768) | |
| 880-1050, gnl|danRer3|chr13 (38979370-38979560) | |
| 880-1050, gnl|dasNov1|scaffold_89417 (3838-4026) | |
| 880-1050, gnl|echTel1|scaffold_57341 (1121-952) | |
| 880-1050, gnl|fr1|chrUn (2851070-2850867) | |
| 880-1050, gnl|galGal2|chr5 (25204308-25204108) | |
| 880-1050, gnl|hg17|chr14 (68411308-68411501) | |
| 880-1050, gnl|Hg17|chr14 (68411489-68411318) | |
| 880-1050, gnl|loxAfr1|scaffold_9916 (1862-2041) | |
| 880-1050, gnl|mm7|chr12 (78131305-78131498) | |
| 880-1050, gnl|Mm7|chr12 (78131486-78131318) | |
| 880-1050, gnl|monDom2|scaffold_8 (84911603-84911791) | |
| 880-1050, gnl|oryCun1|scaffold_186865 (36811-36618) | |
| 880-1050, gnl|panTro1|chr15 (68077992-68078185) | |
| 880-1050, gnl|rheMac2|chr7 (131984741-131984934) | |
| 880-1050, gnl|rn3|chr6 (103192096-103192289) | |
| 880-1050, gnl|tetNig1|chrUn_random (21827516-21827342) | |
| 880-1050, gnl|xenTro1|scaffold_117 (668850-668671) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| jej (0.197844) | |
| cje (0.165235) | |
| pla (0.133672) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| cje (0.165235) | |
| pla (0.133672) | |
| eep (0.122564) | |
| eru (0.120048) |