Ss1.1-Tra1-TCH01B030028.5.5
|
AGCTCCATCCTCATCATTGCTCTACAACTCCGAAGAGCAACAGCTGAGACCACCTTGAGA
AGAGCATGGTCCCAGGCCGAGTTCTGATGTGGGGGGCCCTCGCCCTGACCGCCGTGATGA
GCGCCTGTGGAGGTGAAGACATTGCGGCCGACCATGTTGCCTCCTATGGCTTAAATGTCT
ACCAGTCTTACGGTCCCAGCGGCTATTATACCCATGAATTTGATGGCGACGAGGAATTCT
ACGTGGACCTGGAGAAGAAGGAGACTGTCTGGCAGCTGCCTCTGTTTAGCAAATTTAGAA
GTTTTGACCCGCAGGGTGCACTGAGGAACATAGCTACGGCAAAACATAATTTGAACATCC
TGATTAAACGTTCCAACAACACCGCGGCTGTCAATCAGGTTCCTGAGGTGACTGTGTTTC
CCAAGTCTCCAGTGATGCTGGGTCAGCCCAACACCCTCATCTGTCATGTGGACAACATCT
TTCCTCCTGTGATCAACATCACGTGGTTGAAGAACGGGCACTCTGTCACAGAAGGTTTTT
CTGAGACCAGCTTCCTCTCCAAAAATGATCATTCCTTCCTCAAGATCAGTTATCTCACCT
TCCTCCCTTCTGATGATGATTTTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATAAGC
CACTTCTGAAACACTGGGAACCTGAGATTCCAGCCCCCATGTCAGAGCTGACAGAGACAG
TGGTCTGCGCCCTGGGATTGATCGTGGGCCTTGTGGGCATCGTGGTGGGCACTGTCTTCA
TCATTCAAGGCCTACGCTCAGGTGGTCCCTCTAGACACCAAGGGTCCTTGTGAGTCACAC
TCCAGAAGGGAAGGTGCACTGCCCGCCTACAAGAGCTGAAGAGTGGATGTGCTCAACGAC
CTAGAACTATTTTCTGGCCAAATTCATCATATACCTTCTCTCTTCCTACATTCTTCTTCT
CACCTCTTCTCTGGAACTTAAGGTGCTGTGTCATCTCAGAATTCATATGCCCTTGGAATC
CTCTTCCTGACCTTCTAGGTTTTTTTTCTTTTCTCAGTTGTTACCTGTTATGGGATCTCT
GAGATATCCCACTCGGCTACCTGATCCCTCAGTGACCCTAAACTAATATGTACATGGAAA
CAATAAATCACTTCATGAGGTTTTAAAAAAAAAAAATTTCCTGTCTTTCATCTCAAGGCT
GACTAGGACCATGGTCTCTTGCACTTCAGGCCCATTTAATCTCATTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCTCCATCCTCATCATTGCTCTACAACTCCGAAGAGCAACAGCTGAGACCACCTTGAGA
AGAGCATGGTCCCAGGCCGAGTTCTGATGTGGGGGGCCCTCGCCCTGACCGCCGTGATGA
GCGCCTGTGGAGGTGAAGACATTGCGGCCGACCATGTTGCCTCCTATGGCTTAAATGTCT
ACCAGTCTTACGGTCCCAGCGGCTATTATACCCATGAATTTGATGGCGACGAGGAATTCT
ACGTGGACCTGGAGAAGAAGGAGACTGTCTGGCAGCTGCCTCTGTTTAGCAAATTTAGAA
GTTTTGACCCGCAGGGTGCACTGAGGAACATAGCTACGGCAAAACATAATTTGAACATCC
TGATTAAACGTTCCAACAACACCGCGGCTGTCAATCAGGTTCCTGAGGTGACTGTGTTTC
CCAAGTCTCCAGTGATGCTGGGTCAGCCCAACACCCTCATCTGTCATGTGGACAACATCT
TTCCTCCTGTGATCAACATCACGTGGTTGAAGAACGGGCACTCTGTCACAGAAGGTTTTT
CTGAGACCAGCTTCCTCTCCAAAAATGATCATTCCTTCCTCAAGATCAGTTATCTCACCT
TCCTCCCTTCTGATGATGATTTTTATGACTGCAAAGTGGAGCACTGGGGCCTGGATAAGC
CACTTCTGAAACACTGGGAACCTGAGATTCCAGCCCCCATGTCAGAGCTGACAGAGACAG
TGGTCTGCGCCCTGGGATTGATCGTGGGCCTTGTGGGCATCGTGGTGGGCACTGTCTTCA
TCATTCAAGGCCTACGCTCAGGTGGTCCCTCTAGACACCAAGGGTCCTTGTGAGTCACAC
TCCAGAAGGGAAGGTGCACTGCCCGCCTACAAGAGCTGAAGAGTGGATGTGCTCAACGAC
CTAGAACTATTTTCTGGCCAAATTCATCATATACCTTCTCTCTTCCTACATTCTTCTTCT
CACCTCTTCTCTGGAACTTAAGGTGCTGTGTCATCTCAGAATTCATATGCCCTTGGAATC
CTCTTCCTGACCTTCTAGGTTTTTTTTCTTTTCTCAGTTGTTACCTGTTATGGGATCTCT
GAGATATCCCACTCGGCTACCTGATCCCTCAGTGACCCTAAACTAATATGTACATGGAAA
CAATAAATCACTTCATGAGGTTTTAAAAAAAAAAAATTTCCTGTCTTTCATCTCAAGGCT
GACTAGGACCATGGTCTCTTGCACTTCAGGCCCATTTAATCTCATTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
147-394, gnl|bosTau2|chr23 (21205942-21205695) |
|
147-394, gnl|Hg17|chr6 (32717064-32717311) |
|
147-394, gnl|Mm7|chr17 (32362507-32362260) |
| |
|
397-678, gnl|bosTau2|chr23 (21205245-21204964) |
|
397-678, gnl|canFam2|chr12 (5229171-5229491) |
|
397-678, gnl|danRer3|chr8 (33023544-33023227) |
|
397-678, gnl|dasNov1|scaffold_9793 (33694-34012) |
|
397-678, gnl|echTel1|scaffold_284098 (40271-39967) |
|
397-678, gnl|hg17|chr6 (32717706-32718026) |
|
397-678, gnl|Hg17|chr6 (32717727-32718008) |
|
397-678, gnl|loxAfr1|scaffold_49177 (20350-20656) |
|
397-678, gnl|mm7|chr17 (32361847-32361529) |
|
397-678, gnl|Mm7|chr17 (32361826-32361545) |
|
397-678, gnl|monDom2|scaffold_42 (16389393-16389096) |
|
397-678, gnl|oryCun1|scaffold_178605 (11945-12265) |
|
397-678, gnl|panTro1|chr5 (33169459-33169779) |
|
397-678, gnl|rheMac2|chr4 (32378030-32378350) |
|
397-678, gnl|rn3|chr20 (4701676-4701994) |
|
397-678, gnl|xenTro1|scaffold_1109 (301330-301076) |
| |
|
899-1247, gnl|bosTau2|chr23 (21204360-21204022) |
|
899-1247, gnl|Hg17|chr6 (32718751-32719112) |
|
899-1247, gnl|Mm7|chr17 (32360953-32360654) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
147-394, gnl|bosTau2|chr23 (21205942-21205695) |
|
147-394, gnl|Hg17|chr6 (32717064-32717311) |
|
147-394, gnl|Mm7|chr17 (32362507-32362260) |
| |
|
397-678, gnl|bosTau2|chr23 (21205245-21204964) |
|
397-678, gnl|canFam2|chr12 (5229171-5229491) |
|
397-678, gnl|danRer3|chr8 (33023544-33023227) |
|
397-678, gnl|dasNov1|scaffold_9793 (33694-34012) |
|
397-678, gnl|echTel1|scaffold_284098 (40271-39967) |
|
397-678, gnl|hg17|chr6 (32717706-32718026) |
|
397-678, gnl|Hg17|chr6 (32717727-32718008) |
|
397-678, gnl|loxAfr1|scaffold_49177 (20350-20656) |
|
397-678, gnl|mm7|chr17 (32361847-32361529) |
|
397-678, gnl|Mm7|chr17 (32361826-32361545) |
|
397-678, gnl|monDom2|scaffold_42 (16389393-16389096) |
|
397-678, gnl|oryCun1|scaffold_178605 (11945-12265) |
|
397-678, gnl|panTro1|chr5 (33169459-33169779) |
|
397-678, gnl|rheMac2|chr4 (32378030-32378350) |
|
397-678, gnl|rn3|chr20 (4701676-4701994) |
|
397-678, gnl|xenTro1|scaffold_1109 (301330-301076) |
| |
|
899-1247, gnl|bosTau2|chr23 (21204360-21204022) |
|
899-1247, gnl|Hg17|chr6 (32718751-32719112) |
|
899-1247, gnl|Mm7|chr17 (32360953-32360654) |
|
csp (4.19084) |
|
clu (3.46973) |
|
cty (3.1224) |
|
cly (2.53348) |
|
cag (1.96553) |
|
fty (1.58256) |
|
ill (1.58033) |
|
lnt (1.42308) |
|
mcp (1.36519) |
|
med (1.16252) |
|
nco (1.13214) |
|
duo (1.03681) |
|
spl (1.00229) |
|
col (0.780031) |
|
lin (0.582411) |
|
cbl (0.573987) |
|
cov (0.528611) |
|
pro (0.512033) |
|
mga (0.480615) |
|
pty (0.428143) |
|
mas (0.42061) |
|
hlv (0.417769) |
|
jca (0.34188) |
|
cli (0.305623) |
|
cga (0.279096) |
|
pla (0.267344) |
|
ute (0.265569) |
|
jej (0.197844) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cki (0.165235) |
|
lun (0.150489) |
|
fat (0.147427) |
|
csk (0.140746) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
ldo (0.0970026) |
|
csp (4.19084) |
|
clu (3.46973) |
|
cty (3.1224) |
|
cly (2.53348) |
|
cag (1.96553) |
|
fty (1.58256) |
|
ill (1.58033) |
|
lnt (1.42308) |
|
mcp (1.36519) |
|
med (1.16252) |
|
nco (1.13214) |
|
duo (1.03681) |
|
spl (1.00229) |
|
col (0.780031) |
|
lin (0.582411) |
|
cbl (0.573987) |
|
cov (0.528611) |
|
pro (0.512033) |
|
mga (0.480615) |
|
pty (0.428143) |
|
mas (0.42061) |
|
hlv (0.417769) |
|
jca (0.34188) |
|
cli (0.305623) |
|
cga (0.279096) |
|
pla (0.267344) |
|
ute (0.265569) |
|
jej (0.197844) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cki (0.165235) |
|
lun (0.150489) |
|
fat (0.147427) |
|
csk (0.140746) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
ldo (0.0970026) |
