Ss1.1-Tra1-TCH01B030072.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAATGTGGCCATTAAGAAGCTCAGCAGACCCTTTCAGAACCAAACTCATGCCAAGAGAG CTTACCGGGAGCTGGTCCTCATGAAATGTGTGAACCATAAAAACATTATTAGTTTATTAA ATGTCTTCACACCCCAGAAGACGCTGGAGGAGTTTCAAGATGTTTACTTAGTGATGGAAC TGATGGATGCCAACTTGTGTCAGGTGATTCAGATGGAGTTAGACCATGAGCGAATGTCTT ACCTGCTATACCAAATGTTATGTGGCATCAAGCACCTTCACTCTGCTGGGATTATTCACA GGGACTTAAAACCAAGTAACATTGTAGTCAAGTCTGATTGTACACTGAAAATCCTGGACT TTGGCCTGGCCAGGACAGCAGGCACAAGCTTCATGATGACTCCTTATGTGGTGACACGTT ATTACAGGGCCCCCGAGGTCATTCTAGGAATGGGCTACAAGGAAAATGTGGATATATGGT CTGTGGGATGCATTATGGGAGAAATGGTTCGTCACAAAATCCTCTTTCCAGGAAGGGACT ATATTGACCAGTGGAACAAGGTAATTGAGCAGCTGGGAACGCCATGTCCAGAATTCATGA AGAAATTACAACCCACGGTAAGAAACTATGTGGAGAATCGACCCAAGCACGCAGGACTCA CCTTCCCCAAGCTCTTCCCAGATTCCCTCTTCCCAGCGGACTCCGAGCACAATAAACTCA AAGCCAGCCAAGCCAGGGACTTGTTGTCAAAGATGCTAGTGATTGACCCAGCAAAAAGGA TATCAGTGGATGACGCCTTACAGCATCCATATATCAATGTCTGGTACGACCCTGCTGAAG TGGAGGCGCCTCCGCCTCAGATATATGACAAACAGCTGGATGAGAGAGAACACACCATCG AAGAATGGAAAGAACTCATCTACAAGGAGGTGATGCTTTCGGAAGAGAAGACGAAGAATG GCGTCGTGAAAGGCCAGCCCTCTCCCTCAGGTGCAGCAGTGAACAGCAGTGAGAGTCTCC CTCCTTCCTCTTCTGTCAACGACATCTCCTCCATGTCCACCGACCAGACCCTGGCATCCG ACACTGACAGCAGCCTGGAAGCCTCGGCGGGACCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAATGTGGCCATTAAGAAGCTCAGCAGACCCTTTCAGAACCAAACTCATGCCAAGAGAG CTTACCGGGAGCTGGTCCTCATGAAATGTGTGAACCATAAAAACATTATTAGTTTATTAA ATGTCTTCACACCCCAGAAGACGCTGGAGGAGTTTCAAGATGTTTACTTAGTGATGGAAC TGATGGATGCCAACTTGTGTCAGGTGATTCAGATGGAGTTAGACCATGAGCGAATGTCTT ACCTGCTATACCAAATGTTATGTGGCATCAAGCACCTTCACTCTGCTGGGATTATTCACA GGGACTTAAAACCAAGTAACATTGTAGTCAAGTCTGATTGTACACTGAAAATCCTGGACT TTGGCCTGGCCAGGACAGCAGGCACAAGCTTCATGATGACTCCTTATGTGGTGACACGTT ATTACAGGGCCCCCGAGGTCATTCTAGGAATGGGCTACAAGGAAAATGTGGATATATGGT CTGTGGGATGCATTATGGGAGAAATGGTTCGTCACAAAATCCTCTTTCCAGGAAGGGACT ATATTGACCAGTGGAACAAGGTAATTGAGCAGCTGGGAACGCCATGTCCAGAATTCATGA AGAAATTACAACCCACGGTAAGAAACTATGTGGAGAATCGACCCAAGCACGCAGGACTCA CCTTCCCCAAGCTCTTCCCAGATTCCCTCTTCCCAGCGGACTCCGAGCACAATAAACTCA AAGCCAGCCAAGCCAGGGACTTGTTGTCAAAGATGCTAGTGATTGACCCAGCAAAAAGGA TATCAGTGGATGACGCCTTACAGCATCCATATATCAATGTCTGGTACGACCCTGCTGAAG TGGAGGCGCCTCCGCCTCAGATATATGACAAACAGCTGGATGAGAGAGAACACACCATCG AAGAATGGAAAGAACTCATCTACAAGGAGGTGATGCTTTCGGAAGAGAAGACGAAGAATG GCGTCGTGAAAGGCCAGCCCTCTCCCTCAGGTGCAGCAGTGAACAGCAGTGAGAGTCTCC CTCCTTCCTCTTCTGTCAACGACATCTCCTCCATGTCCACCGACCAGACCCTGGCATCCG ACACTGACAGCAGCCTGGAAGCCTCGGCGGGACCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-121, gnl|bosTau2|chr6 (56403216-56403337) | |
| 1-121, gnl|Hg17|chr4 (87385658-87385534) | |
| 1-121, gnl|Mm7|chr5 (102185050-102184940) | |
| 302-466, gnl|bosTau2|chr28 (32761135-32760971) | |
| 302-466, gnl|Hg17|chr10 (49298203-49298367) | |
| 302-466, gnl|Mm7|chr14 (30822873-30822709) | |
| 541-723, gnl|bosTau2|chr28 (32755857-32755675) | |
| 541-723, gnl|canFam2|chr28 (3395735-3395950) | |
| 541-723, gnl|danRer3|chrNA (17668802-17669011) | |
| 541-723, gnl|dasNov1|scaffold_27657 (1493-1708) | |
| 541-723, gnl|echTel1|scaffold_311111 (32681-32468) | |
| 541-723, gnl|fr1|chrUn (16368010-16368218) | |
| 541-723, gnl|galGal2|chr6 (17439279-17439494) | |
| 541-723, gnl|hg17|chr10 (49303908-49304123) | |
| 541-723, gnl|Hg17|chr10 (49303937-49304119) | |
| 541-723, gnl|loxAfr1|scaffold_47329 (14030-14245) | |
| 541-723, gnl|mm7|chr14 (30818780-30818563) | |
| 541-723, gnl|Mm7|chr14 (30818747-30818565) | |
| 541-723, gnl|monDom2|scaffold_14 (19296784-19296999) | |
| 541-723, gnl|oryCun1|scaffold_113394 (9583-9798) | |
| 541-723, gnl|panTro1|chr8 (49630231-49630446) | |
| 541-723, gnl|rheMac2|chr9 (48191560-48191345) | |
| 541-723, gnl|rn3|chr16 (8931644-8931427) | |
| 541-723, gnl|tetNig1|chr4 (3606455-3606240) | |
| 541-723, gnl|xenTro1|scaffold_696 (239567-239356) | |
| 988-1116, gnl|bosTau2|chr6 (56506616-56506744) | |
| 988-1116, gnl|canFam2|chr32 (12551922-12552100) | |
| 988-1116, gnl|danRer3|chrUn (110952995-110953160) | |
| 988-1116, gnl|dasNov1|scaffold_33923 (3726-3548) | |
| 988-1116, gnl|echTel1|scaffold_313608 (4786-4608) | |
| 988-1116, gnl|fr1|chrUn (30032751-30032949) | |
| 988-1116, gnl|galGal2|chr4 (46526388-46526566) | |
| 988-1116, gnl|hg17|chr4 (87295556-87295734) | |
| 988-1116, gnl|Hg17|chr4 (87295705-87295577) | |
| 988-1116, gnl|loxAfr1|scaffold_605 (46121-45943) | |
| 988-1116, gnl|mm7|chr5 (102101544-102101722) | |
| 988-1116, gnl|Mm7|chr5 (102101693-102101565) | |
| 988-1116, gnl|monDom2|scaffold_37 (16727585-16727407) | |
| 988-1116, gnl|oryCun1|scaffold_209308 (98339-98517) | |
| 988-1116, gnl|panTro1|chr3_random (847637-847459) | |
| 988-1116, gnl|rheMac2|chr5 (78964440-78964618) | |
| 988-1116, gnl|rn3|chr14 (8010347-8010169) | |
| 988-1116, gnl|tetNig1|chr4 (3603118-3603291) | |
| 988-1116, gnl|xenTro1|scaffold_1110 (243085-242907) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-121, gnl|bosTau2|chr6 (56403216-56403337) | |
| 1-121, gnl|Hg17|chr4 (87385658-87385534) | |
| 1-121, gnl|Mm7|chr5 (102185050-102184940) | |
| 302-466, gnl|bosTau2|chr28 (32761135-32760971) | |
| 302-466, gnl|Hg17|chr10 (49298203-49298367) | |
| 302-466, gnl|Mm7|chr14 (30822873-30822709) | |
| 541-723, gnl|bosTau2|chr28 (32755857-32755675) | |
| 541-723, gnl|canFam2|chr28 (3395735-3395950) | |
| 541-723, gnl|danRer3|chrNA (17668802-17669011) | |
| 541-723, gnl|dasNov1|scaffold_27657 (1493-1708) | |
| 541-723, gnl|echTel1|scaffold_311111 (32681-32468) | |
| 541-723, gnl|fr1|chrUn (16368010-16368218) | |
| 541-723, gnl|galGal2|chr6 (17439279-17439494) | |
| 541-723, gnl|hg17|chr10 (49303908-49304123) | |
| 541-723, gnl|Hg17|chr10 (49303937-49304119) | |
| 541-723, gnl|loxAfr1|scaffold_47329 (14030-14245) | |
| 541-723, gnl|mm7|chr14 (30818780-30818563) | |
| 541-723, gnl|Mm7|chr14 (30818747-30818565) | |
| 541-723, gnl|monDom2|scaffold_14 (19296784-19296999) | |
| 541-723, gnl|oryCun1|scaffold_113394 (9583-9798) | |
| 541-723, gnl|panTro1|chr8 (49630231-49630446) | |
| 541-723, gnl|rheMac2|chr9 (48191560-48191345) | |
| 541-723, gnl|rn3|chr16 (8931644-8931427) | |
| 541-723, gnl|tetNig1|chr4 (3606455-3606240) | |
| 541-723, gnl|xenTro1|scaffold_696 (239567-239356) | |
| 988-1116, gnl|bosTau2|chr6 (56506616-56506744) | |
| 988-1116, gnl|canFam2|chr32 (12551922-12552100) | |
| 988-1116, gnl|danRer3|chrUn (110952995-110953160) | |
| 988-1116, gnl|dasNov1|scaffold_33923 (3726-3548) | |
| 988-1116, gnl|echTel1|scaffold_313608 (4786-4608) | |
| 988-1116, gnl|fr1|chrUn (30032751-30032949) | |
| 988-1116, gnl|galGal2|chr4 (46526388-46526566) | |
| 988-1116, gnl|hg17|chr4 (87295556-87295734) | |
| 988-1116, gnl|Hg17|chr4 (87295705-87295577) | |
| 988-1116, gnl|loxAfr1|scaffold_605 (46121-45943) | |
| 988-1116, gnl|mm7|chr5 (102101544-102101722) | |
| 988-1116, gnl|Mm7|chr5 (102101693-102101565) | |
| 988-1116, gnl|monDom2|scaffold_37 (16727585-16727407) | |
| 988-1116, gnl|oryCun1|scaffold_209308 (98339-98517) | |
| 988-1116, gnl|panTro1|chr3_random (847637-847459) | |
| 988-1116, gnl|rheMac2|chr5 (78964440-78964618) | |
| 988-1116, gnl|rn3|chr14 (8010347-8010169) | |
| 988-1116, gnl|tetNig1|chr4 (3603118-3603291) | |
| 988-1116, gnl|xenTro1|scaffold_1110 (243085-242907) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| cut (0.169924) | |
| pgl (0.118483) |