Non-Coding RNA Search

Ss1.1-Tra1-TCH01B030080.5

Sequence:


               
               CATGCTTTTATTTTCATCTCAGCAGATGTTCTCATTTGGCACCTGACTGACACCACACCA
AAGCCCTCAGGCCAACAAGCATGGGCTGAGACCATGTGCAGACTTCTCGTTTGTAGGTCG
CAATGCCCACGAGCCTCAGGGTACCTGGTCCTCTCCCTGGTCCCCTAGGAAGGCCTACAT
CTGTCTCAGGTACGCTAACAGGGCCGGCCACAAGGTGATGCACAAGTCACGACACTGCAA
TCTGCTGGGACAGGAAGCCAAGCAGTGCCTGGAAAGCACACAGCTATGTGGAGAACTCCA
CATAGGGTTCCAGTCGTGATTATTCAACGTACTCCTGTCTGCCTGGGCTGGAATGAAGAA
GGCCTGTCCTCCCCAGGGAAACCAGGAAGGAGACACAAGCACGTTTACACTTTCCAGAGC
TCAGGCATCGAAGGAGGTCTTCTCCTGGATGGGCTGGGGCTGGGGCCGGGAGCGCTCAGG
TCAGCGCTGCTGGCCAGAGGAAAGCTCGAGTCCAGCTTCGCAGCCTTTGCACAGGGGGTA
CCTCCCCAGGATCCATGAAAGTACTCAGAGCCGATCAGAGCATTTTGCCTACATGTAGTT
TCCACCTGTCAGAGGTGTTCAGTACTGTGTGGCCTGGGGCCCTTCTCGGGATCTCAATTC
AAAGTTAGCTATTCAAAGCATGAAAGAAGAGGGAGTACATTTCAAGGATCATGGCTGCTC
TTTTTAGCCCTGCTGAGGGAACAAGTTCAGACATGACTGGAAGAGAGAAAACTGGGCACT
CGGCAGGGCTCAAGCTGGATGTCAGACTCAGACTTCTGATGCAGTACAAGTGGGACCTCA
GCTTGGGGTCCAGCATTCCAATATATCCTCTGCGAGGCTAGTTGACCCGGCAGGCACGGA
TCATGAGCAGCTGCAGAAGAATGAACACCGGGGACGTGATCAGGCCGAACCAGAGCTCCC
GAGTCTGCTCCACCAGCTTCTGGCACAACAACATCTCGAAGACGAACTTGAGGCTAAGAA
CTGTGAGGACCCAGAAAAGGCGGAGCACGGCCAGCCGCTTCTCTCCGTCCTGGAAGAGGC
GCACGGAGACGATAGTGGTGAAGTAGGTGCTGAGCCCGTCCGCTGCGAAGAAGGGCACGA
ACACGTTCCACCAGGAGAGGCCGGGAGCCAGGCCATCCACACGCAGGGCCAGCAGCACGG
AGAACACCAACAGGGCTAAGAGGTGCACGAAGATCTCGAAGGTAGCGAAGCCCAGCCACT
GCACCAGCTCCCGGAGCGAGAAAAGCATCGCGCCGGCTGAGCGCGGGCCAGGGCCCGGCA
GAGCGTCCCAACCTCAGGGCTGGGCCTCCACTCCTTACGGGCCTCGCCGGCGCCTGCCTC
CGTCGGCGCCGCGGCCAGCGGGAGGCAGCGAGCGGCCCCCACCTGCCCCGGCCCTCGGCC
CCGGCGCGCCGCCGACCCCCAAGCCCCAGCCCGGGACCCGACACTGGCCGCCAGCGGACG
CCCGCGGCGCTCGGACGCCATGCCCCGCCGGGCGCAGCCCTAGGACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGCTTTTATTTTCATCTCAGCAGATGTTCTCATTTGGCACCTGACTGACACCACACCA
AAGCCCTCAGGCCAACAAGCATGGGCTGAGACCATGTGCAGACTTCTCGTTTGTAGGTCG
CAATGCCCACGAGCCTCAGGGTACCTGGTCCTCTCCCTGGTCCCCTAGGAAGGCCTACAT
CTGTCTCAGGTACGCTAACAGGGCCGGCCACAAGGTGATGCACAAGTCACGACACTGCAA
TCTGCTGGGACAGGAAGCCAAGCAGTGCCTGGAAAGCACACAGCTATGTGGAGAACTCCA
CATAGGGTTCCAGTCGTGATTATTCAACGTACTCCTGTCTGCCTGGGCTGGAATGAAGAA
GGCCTGTCCTCCCCAGGGAAACCAGGAAGGAGACACAAGCACGTTTACACTTTCCAGAGC
TCAGGCATCGAAGGAGGTCTTCTCCTGGATGGGCTGGGGCTGGGGCCGGGAGCGCTCAGG
TCAGCGCTGCTGGCCAGAGGAAAGCTCGAGTCCAGCTTCGCAGCCTTTGCACAGGGGGTA
CCTCCCCAGGATCCATGAAAGTACTCAGAGCCGATCAGAGCATTTTGCCTACATGTAGTT
TCCACCTGTCAGAGGTGTTCAGTACTGTGTGGCCTGGGGCCCTTCTCGGGATCTCAATTC
AAAGTTAGCTATTCAAAGCATGAAAGAAGAGGGAGTACATTTCAAGGATCATGGCTGCTC
TTTTTAGCCCTGCTGAGGGAACAAGTTCAGACATGACTGGAAGAGAGAAAACTGGGCACT
CGGCAGGGCTCAAGCTGGATGTCAGACTCAGACTTCTGATGCAGTACAAGTGGGACCTCA
GCTTGGGGTCCAGCATTCCAATATATCCTCTGCGAGGCTAGTTGACCCGGCAGGCACGGA
TCATGAGCAGCTGCAGAAGAATGAACACCGGGGACGTGATCAGGCCGAACCAGAGCTCCC
GAGTCTGCTCCACCAGCTTCTGGCACAACAACATCTCGAAGACGAACTTGAGGCTAAGAA
CTGTGAGGACCCAGAAAAGGCGGAGCACGGCCAGCCGCTTCTCTCCGTCCTGGAAGAGGC
GCACGGAGACGATAGTGGTGAAGTAGGTGCTGAGCCCGTCCGCTGCGAAGAAGGGCACGA
ACACGTTCCACCAGGAGAGGCCGGGAGCCAGGCCATCCACACGCAGGGCCAGCAGCACGG
AGAACACCAACAGGGCTAAGAGGTGCACGAAGATCTCGAAGGTAGCGAAGCCCAGCCACT
GCACCAGCTCCCGGAGCGAGAAAAGCATCGCGCCGGCTGAGCGCGGGCCAGGGCCCGGCA
GAGCGTCCCAACCTCAGGGCTGGGCCTCCACTCCTTACGGGCCTCGCCGGCGCCTGCCTC
CGTCGGCGCCGCGGCCAGCGGGAGGCAGCGAGCGGCCCCCACCTGCCCCGGCCCTCGGCC
CCGGCGCGCCGCCGACCCCCAAGCCCCAGCCCGGGACCCGACACTGGCCGCCAGCGGACG
CCCGCGGCGCTCGGACGCCATGCCCCGCCGGGCGCAGCCCTAGGACGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8R235_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R235_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1548, gnl|bosTau2|chr11 (85478243-85476729)
               

               
               6-1548, gnl|Hg17|chr9 (137374392-137375957)
               

               
               6-1548, gnl|Mm7|chr2 (25264445-25262729)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1548, gnl|bosTau2|chr11 (85478243-85476729)
               

               
               6-1548, gnl|Hg17|chr9 (137374392-137375957)
               

               
               6-1548, gnl|Mm7|chr2 (25264445-25262729)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ece (0.45861)
               

               
               mas (0.42061)
               

               
               cly (0.241284)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               mas (0.42061)
               

               
               cly (0.241284)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	6-1548, gnl\|bosTau2\|chr11 (85478243-85476729)
	6-1548, gnl\|Hg17\|chr9 (137374392-137375957)
	6-1548, gnl\|Mm7\|chr2 (25264445-25262729)

	ece (0.45861)
	mas (0.42061)
	cly (0.241284)
	fli (0.202881)
	col (0.195008)
	ldo (0.194005)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	eye (0.170503)
	csp (0.161186)
	hyp (0.142837)
	cov (0.132153)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)