Ss1.1-Tra1-TCH01B040015.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTAGGCACTCCATGGCTGTGAAGATGGCGTCGGCTGCGTGGCTTCAGGTGTTGCCTGT CATTCTTCTTCTTCTTCTGGGGGCTCCCACGTCCCCACTGTCACATTTCGGTGTAGGACC GGCATCCGTGGCAGCTGCCGACCGATCCAAGTGGCGCATACCGATATCGTTGGGGAAAAA TTATTTTAGTTTTGGAAAGATCCTCTTCAAAAATACTACTATCTTCCTGAAATTTGATGG AGAACCTTGTGACGTATCTTTGAATATAACCTGGTATCTGAAAAGTGCTGACTGTTATAA TGAGATATACAACTTCAAGACAGAAGAAGTGGAGACATACTTAGAAAATCTTAAGGAAAA AAAAGGCTTGTCTGGGAAATATCAAACATCATCAAAATTGTTCCAGAACTGCAGTGAACT CTTTAAAGCACAGAGCTTTTCTGGGGAATTCATACATCGATTGCCTCTCTTAGGAGAAAA ACAGGAGTCTAAGGAGAATGGAACAAATCTTACCGTTACTGGAGACAAAACTGTAATGCA TGATCCATTGAAAACTTGGCAAGATGCACCATACATTTTTATTGTACATGTTGGCATTTC ATCCTCTAAGGAATCATCAAAAGAAAATTCCCCAAGTAGTCTTTTTACCATGACTGTTGA AGTGAAAGGTCCCTATGAATACCTCACACTTGAAGACTATCCTCTGATGATTTTTTTTAT GGTGATGTGTATTGTATATGTCCTGTTTGGTGTACTGTGGCTGGCATGGTCTGCTTGCTA CTGGAGAGATCTCCTGAGAATTCAGTTTTGGATCGGTGCTGTCATCTTCTTGGGAATGCT TGAGAAAGCTGTCTTCTATGCAGAATTTCAGAATATCCGATACAAAGGAGAATCTGTCCA AGGTGCCCTGATCCTTGCAGAGCTGCTTTCGGCTGTTAAACGCTCACTGGCTCGAACCTT GGTCATCATAGTCAGTCTGGGATATGGCATTGTCAAGCCTCGCCTTGGTGTTACCCTCCA CAAGGTTGTGGTAGCAGGAGCCCTTTATCTTTTGTTCTCCGGCATGGAAGGGGTCCTCAG AGTTACTGGGGCCCAGACTGATCTTGCTTCCTTGGCCTTTATCCCCTTGGCTTTCCTAGA CACTGCCCTGTGCTGGTGGATATTTATTAGTCTGACTCAAACAATGAAGCTATTAAAACT TCGGAGGAACATTGTAAAACTCTCTTTATACCGACATTTCACCAACACGCTTATCTTGGC GGTGGCAGCATCTATCGTGTTTATCATCTGGACCACCATGAAGTTCAGGATAGTGACTTG TCAGTCGGATTGGCGGGAGCTGTGGGTAGACGATGCCATCTGGCGGTTGCTATTCTCTAT GATCCTCTTTGTCATCATGGTTCTGTGGCGACCATCTGCAAACAACCAGAGGTTTGACTT TTCACCATTGTCTGAGGAAGAGGAGGAGGATGAACAAAAAGAACCAATGCTGAAAGAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTAGGCACTCCATGGCTGTGAAGATGGCGTCGGCTGCGTGGCTTCAGGTGTTGCCTGT CATTCTTCTTCTTCTTCTGGGGGCTCCCACGTCCCCACTGTCACATTTCGGTGTAGGACC GGCATCCGTGGCAGCTGCCGACCGATCCAAGTGGCGCATACCGATATCGTTGGGGAAAAA TTATTTTAGTTTTGGAAAGATCCTCTTCAAAAATACTACTATCTTCCTGAAATTTGATGG AGAACCTTGTGACGTATCTTTGAATATAACCTGGTATCTGAAAAGTGCTGACTGTTATAA TGAGATATACAACTTCAAGACAGAAGAAGTGGAGACATACTTAGAAAATCTTAAGGAAAA AAAAGGCTTGTCTGGGAAATATCAAACATCATCAAAATTGTTCCAGAACTGCAGTGAACT CTTTAAAGCACAGAGCTTTTCTGGGGAATTCATACATCGATTGCCTCTCTTAGGAGAAAA ACAGGAGTCTAAGGAGAATGGAACAAATCTTACCGTTACTGGAGACAAAACTGTAATGCA TGATCCATTGAAAACTTGGCAAGATGCACCATACATTTTTATTGTACATGTTGGCATTTC ATCCTCTAAGGAATCATCAAAAGAAAATTCCCCAAGTAGTCTTTTTACCATGACTGTTGA AGTGAAAGGTCCCTATGAATACCTCACACTTGAAGACTATCCTCTGATGATTTTTTTTAT GGTGATGTGTATTGTATATGTCCTGTTTGGTGTACTGTGGCTGGCATGGTCTGCTTGCTA CTGGAGAGATCTCCTGAGAATTCAGTTTTGGATCGGTGCTGTCATCTTCTTGGGAATGCT TGAGAAAGCTGTCTTCTATGCAGAATTTCAGAATATCCGATACAAAGGAGAATCTGTCCA AGGTGCCCTGATCCTTGCAGAGCTGCTTTCGGCTGTTAAACGCTCACTGGCTCGAACCTT GGTCATCATAGTCAGTCTGGGATATGGCATTGTCAAGCCTCGCCTTGGTGTTACCCTCCA CAAGGTTGTGGTAGCAGGAGCCCTTTATCTTTTGTTCTCCGGCATGGAAGGGGTCCTCAG AGTTACTGGGGCCCAGACTGATCTTGCTTCCTTGGCCTTTATCCCCTTGGCTTTCCTAGA CACTGCCCTGTGCTGGTGGATATTTATTAGTCTGACTCAAACAATGAAGCTATTAAAACT TCGGAGGAACATTGTAAAACTCTCTTTATACCGACATTTCACCAACACGCTTATCTTGGC GGTGGCAGCATCTATCGTGTTTATCATCTGGACCACCATGAAGTTCAGGATAGTGACTTG TCAGTCGGATTGGCGGGAGCTGTGGGTAGACGATGCCATCTGGCGGTTGCTATTCTCTAT GATCCTCTTTGTCATCATGGTTCTGTGGCGACCATCTGCAAACAACCAGAGGTTTGACTT TTCACCATTGTCTGAGGAAGAGGAGGAGGATGAACAAAAAGAACCAATGCTGAAAGAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 713-832, + strand, RNAz p=0.638531 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 713-832, + strand, RNAz p=0.638531 |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 2-176, gnl|bosTau2|chr10 (17107474-17107303) | |
| 2-176, gnl|canFam2|chr30 (12245820-12246504) | |
| 2-176, gnl|dasNov1|scaffold_22323 (46701-45995) | |
| 2-176, gnl|echTel1|scaffold_268229 (2287-2958) | |
| 2-176, gnl|hg17|chr15 (40352366-40353048) | |
| 2-176, gnl|Hg17|chr15 (40352912-40352741) | |
| 2-176, gnl|loxAfr1|scaffold_11334 (1323-645) | |
| 2-176, gnl|mm7|chr2 (120144402-120145050) | |
| 2-176, gnl|Mm7|chr2 (120144921-120144750) | |
| 2-176, gnl|monDom2|scaffold_53 (12298740-12297972) | |
| 2-176, gnl|oryCun1|scaffold_204911 (153955-154618) | |
| 2-176, gnl|panTro1|chr16 (40327029-40327706) | |
| 2-176, gnl|rheMac2|chr7 (20683314-20683990) | |
| 2-176, gnl|rn3|chr3 (106788498-106789158) | |
| 314-433, gnl|bosTau2|chr10 (17101120-17101001) | |
| 314-433, gnl|canFam2|chr30 (12238479-12238764) | |
| 314-433, gnl|echTel1|scaffold_277361 (46798-46519) | |
| 314-433, gnl|hg17|chr15 (40343427-40343716) | |
| 314-433, gnl|Hg17|chr15 (40343699-40343580) | |
| 314-433, gnl|loxAfr1|scaffold_11334 (10676-10396) | |
| 314-433, gnl|mm7|chr2 (120135094-120135350) | |
| 314-433, gnl|Mm7|chr2 (120135332-120135211) | |
| 314-433, gnl|monDom2|scaffold_53 (12306335-12306044) | |
| 314-433, gnl|oryCun1|scaffold_204911 (147225-147515) | |
| 314-433, gnl|panTro1|chr16 (40318421-40318710) | |
| 314-433, gnl|rheMac2|chr7 (20674481-20674769) | |
| 314-433, gnl|rn3|chr3 (106779110-106779360) | |
| 533-650, gnl|bosTau2|chr10 (17095971-17095854) | |
| 533-650, gnl|canFam2|chr30 (12230299-12230582) | |
| 533-650, gnl|dasNov1|scaffold_58508 (668-386) | |
| 533-650, gnl|galGal2|chr5 (22871227-22871564) | |
| 533-650, gnl|hg17|chr15 (40323487-40323777) | |
| 533-650, gnl|Hg17|chr15 (40323657-40323540) | |
| 533-650, gnl|mm7|chr2 (120126567-120126851) | |
| 533-650, gnl|Mm7|chr2 (120126740-120126623) | |
| 533-650, gnl|monDom2|scaffold_53 (12312927-12312635) | |
| 533-650, gnl|oryCun1|scaffold_204911 (141633-141924) | |
| 533-650, gnl|panTro1|chr16 (40298397-40298687) | |
| 533-650, gnl|rheMac2|chr7 (20655864-20656161) | |
| 533-650, gnl|rn3|chr3 (106770321-106770617) | |
| 713-896, gnl|bosTau2|chr10 (17091458-17091275) | |
| 713-896, gnl|canFam2|chr30 (12225286-12225499) | |
| 713-896, gnl|danRer3|chr15 (36859310-36859096) | |
| 713-896, gnl|echTel1|scaffold_53130 (4942-5152) | |
| 713-896, gnl|fr1|chrUn (181882251-181882056) | |
| 713-896, gnl|galGal2|chr5 (22869292-22869503) | |
| 713-896, gnl|hg17|chr15 (40316900-40317112) | |
| 713-896, gnl|Hg17|chr15 (40317105-40316922) | |
| 713-896, gnl|loxAfr1|scaffold_30913 (6462-6250) | |
| 713-896, gnl|mm7|chr2 (120120435-120120630) | |
| 713-896, gnl|Mm7|chr2 (120120623-120120440) | |
| 713-896, gnl|monDom2|scaffold_53 (12316359-12316145) | |
| 713-896, gnl|oryCun1|scaffold_204911 (136196-136408) | |
| 713-896, gnl|panTro1|chr16 (40291821-40292033) | |
| 713-896, gnl|rheMac2|chr7 (20648947-20649159) | |
| 713-896, gnl|rn3|chr3 (106764250-106764445) | |
| 713-896, gnl|tetNig1|chr10 (11767307-11767499) | |
| 713-896, gnl|xenTro1|scaffold_658 (370774-370978) | |
| 1160-1268, gnl|bosTau2|chr10 (17082593-17082485) | |
| 1160-1268, gnl|canFam2|chr30 (12219513-12219708) | |
| 1160-1268, gnl|danRer3|chr15 (36867465-36867304) | |
| 1160-1268, gnl|dasNov1|scaffold_132917 (935-1128) | |
| 1160-1268, gnl|echTel1|scaffold_308144 (40324-40488) | |
| 1160-1268, gnl|fr1|chrUn (181883299-181883132) | |
| 1160-1268, gnl|galGal2|chr5 (22865979-22866149) | |
| 1160-1268, gnl|hg17|chr15 (40308159-40308356) | |
| 1160-1268, gnl|Hg17|chr15 (40308310-40308202) | |
| 1160-1268, gnl|loxAfr1|scaffold_30913 (14007-13825) | |
| 1160-1268, gnl|mm7|chr2 (120112358-120112520) | |
| 1160-1268, gnl|Mm7|chr2 (120112481-120112373) | |
| 1160-1268, gnl|monDom2|scaffold_53 (12325830-12325634) | |
| 1160-1268, gnl|oryCun1|scaffold_204911 (129815-130010) | |
| 1160-1268, gnl|panTro1|chr16 (40283053-40283250) | |
| 1160-1268, gnl|rheMac2|chr7 (20639546-20639743) | |
| 1160-1268, gnl|rn3|chr3 (106755844-106756034) | |
| 1160-1268, gnl|tetNig1|chr10 (11766174-11766324) | |
| 1160-1268, gnl|xenTro1|scaffold_658 (366057-366228) | |
| 1324-1436, gnl|bosTau2|chr10 (17080762-17080650) | |
| 1324-1436, gnl|Hg17|chr15 (40306403-40306291) | |
| 1324-1436, gnl|Mm7|chr2 (120110200-120110088) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-176, gnl|bosTau2|chr10 (17107474-17107303) | |
| 2-176, gnl|canFam2|chr30 (12245820-12246504) | |
| 2-176, gnl|dasNov1|scaffold_22323 (46701-45995) | |
| 2-176, gnl|echTel1|scaffold_268229 (2287-2958) | |
| 2-176, gnl|hg17|chr15 (40352366-40353048) | |
| 2-176, gnl|Hg17|chr15 (40352912-40352741) | |
| 2-176, gnl|loxAfr1|scaffold_11334 (1323-645) | |
| 2-176, gnl|mm7|chr2 (120144402-120145050) | |
| 2-176, gnl|Mm7|chr2 (120144921-120144750) | |
| 2-176, gnl|monDom2|scaffold_53 (12298740-12297972) | |
| 2-176, gnl|oryCun1|scaffold_204911 (153955-154618) | |
| 2-176, gnl|panTro1|chr16 (40327029-40327706) | |
| 2-176, gnl|rheMac2|chr7 (20683314-20683990) | |
| 2-176, gnl|rn3|chr3 (106788498-106789158) | |
| 314-433, gnl|bosTau2|chr10 (17101120-17101001) | |
| 314-433, gnl|canFam2|chr30 (12238479-12238764) | |
| 314-433, gnl|echTel1|scaffold_277361 (46798-46519) | |
| 314-433, gnl|hg17|chr15 (40343427-40343716) | |
| 314-433, gnl|Hg17|chr15 (40343699-40343580) | |
| 314-433, gnl|loxAfr1|scaffold_11334 (10676-10396) | |
| 314-433, gnl|mm7|chr2 (120135094-120135350) | |
| 314-433, gnl|Mm7|chr2 (120135332-120135211) | |
| 314-433, gnl|monDom2|scaffold_53 (12306335-12306044) | |
| 314-433, gnl|oryCun1|scaffold_204911 (147225-147515) | |
| 314-433, gnl|panTro1|chr16 (40318421-40318710) | |
| 314-433, gnl|rheMac2|chr7 (20674481-20674769) | |
| 314-433, gnl|rn3|chr3 (106779110-106779360) | |
| 533-650, gnl|bosTau2|chr10 (17095971-17095854) | |
| 533-650, gnl|canFam2|chr30 (12230299-12230582) | |
| 533-650, gnl|dasNov1|scaffold_58508 (668-386) | |
| 533-650, gnl|galGal2|chr5 (22871227-22871564) | |
| 533-650, gnl|hg17|chr15 (40323487-40323777) | |
| 533-650, gnl|Hg17|chr15 (40323657-40323540) | |
| 533-650, gnl|mm7|chr2 (120126567-120126851) | |
| 533-650, gnl|Mm7|chr2 (120126740-120126623) | |
| 533-650, gnl|monDom2|scaffold_53 (12312927-12312635) | |
| 533-650, gnl|oryCun1|scaffold_204911 (141633-141924) | |
| 533-650, gnl|panTro1|chr16 (40298397-40298687) | |
| 533-650, gnl|rheMac2|chr7 (20655864-20656161) | |
| 533-650, gnl|rn3|chr3 (106770321-106770617) | |
| 713-896, gnl|bosTau2|chr10 (17091458-17091275) | |
| 713-896, gnl|canFam2|chr30 (12225286-12225499) | |
| 713-896, gnl|danRer3|chr15 (36859310-36859096) | |
| 713-896, gnl|echTel1|scaffold_53130 (4942-5152) | |
| 713-896, gnl|fr1|chrUn (181882251-181882056) | |
| 713-896, gnl|galGal2|chr5 (22869292-22869503) | |
| 713-896, gnl|hg17|chr15 (40316900-40317112) | |
| 713-896, gnl|Hg17|chr15 (40317105-40316922) | |
| 713-896, gnl|loxAfr1|scaffold_30913 (6462-6250) | |
| 713-896, gnl|mm7|chr2 (120120435-120120630) | |
| 713-896, gnl|Mm7|chr2 (120120623-120120440) | |
| 713-896, gnl|monDom2|scaffold_53 (12316359-12316145) | |
| 713-896, gnl|oryCun1|scaffold_204911 (136196-136408) | |
| 713-896, gnl|panTro1|chr16 (40291821-40292033) | |
| 713-896, gnl|rheMac2|chr7 (20648947-20649159) | |
| 713-896, gnl|rn3|chr3 (106764250-106764445) | |
| 713-896, gnl|tetNig1|chr10 (11767307-11767499) | |
| 713-896, gnl|xenTro1|scaffold_658 (370774-370978) | |
| 1160-1268, gnl|bosTau2|chr10 (17082593-17082485) | |
| 1160-1268, gnl|canFam2|chr30 (12219513-12219708) | |
| 1160-1268, gnl|danRer3|chr15 (36867465-36867304) | |
| 1160-1268, gnl|dasNov1|scaffold_132917 (935-1128) | |
| 1160-1268, gnl|echTel1|scaffold_308144 (40324-40488) | |
| 1160-1268, gnl|fr1|chrUn (181883299-181883132) | |
| 1160-1268, gnl|galGal2|chr5 (22865979-22866149) | |
| 1160-1268, gnl|hg17|chr15 (40308159-40308356) | |
| 1160-1268, gnl|Hg17|chr15 (40308310-40308202) | |
| 1160-1268, gnl|loxAfr1|scaffold_30913 (14007-13825) | |
| 1160-1268, gnl|mm7|chr2 (120112358-120112520) | |
| 1160-1268, gnl|Mm7|chr2 (120112481-120112373) | |
| 1160-1268, gnl|monDom2|scaffold_53 (12325830-12325634) | |
| 1160-1268, gnl|oryCun1|scaffold_204911 (129815-130010) | |
| 1160-1268, gnl|panTro1|chr16 (40283053-40283250) | |
| 1160-1268, gnl|rheMac2|chr7 (20639546-20639743) | |
| 1160-1268, gnl|rn3|chr3 (106755844-106756034) | |
| 1160-1268, gnl|tetNig1|chr10 (11766174-11766324) | |
| 1160-1268, gnl|xenTro1|scaffold_658 (366057-366228) | |
| 1324-1436, gnl|bosTau2|chr10 (17080762-17080650) | |
| 1324-1436, gnl|Hg17|chr15 (40306403-40306291) | |
| 1324-1436, gnl|Mm7|chr2 (120110200-120110088) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| spl (0.429553) | |
| cut (0.339847) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| pty (0.142714) | |
| cst (0.140036) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.429553) | |
| cut (0.339847) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| pty (0.142714) | |
| cst (0.140036) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ldo (0.0970026) |