Ss1.1-Tra1-TCH01B040031.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTGAGCCCCTGTCCTGGGTGAGACTCCGTGTTAGGCTCTTAGGATGTGTTATATGCCC TTCAGCCCAGCAATATCCCTGTTACCTCTGGGAGGAAACGATTGATTGTTGGCTAAGAAG CATGACAATAACATATACGAATTTATGAAACTTTATGCCTTGGAGCCAGGATTCCAACCC AGGCCTGACCGCAAAGCTTCTGTGCTTACCCCATCCCACACGGGTGGTGTATTCTGCACT GTGATCATGAAGTCCCTGCTTTGTTTGCTGTATTACCCGTGTGAGCACGTCATGACATGG CTTCGAGTATCAGACGTTCTCTAGAAGCATAATTCTACTGGGATTGACACTAGCTGTCTA TGAACCTCTTTCAGAGTATCTGTTCACTCTTTAACCCCTGGTGCGCTACCAGCTGGAGAA TTTAGACGAGTAGCTTCTTTAAGCTAAAATGATCAAACATTTAACCTAAAATGATCAAAA CATAGGAAGAATGATTTGTGCCTCTCTTAAAACTTACCTGGTTCCTGTAATTTTTGTCTG GGGAAAAGAAGCCAATCCTAGCACCCTTTGGCAGGAGAGTTAAATGAGCTGTGAAAGGTA GCTTTGTCCTGTCATCATAAACTCACCTATAAAACGCATTCATCCACAGTCAAGGGCATC AGGCCGTGTTGGGCAGAACCATCTTCAGGCTACTTATGGATGATCTCAGAGAACGGGGCC ATGGCATCCATGTGAGGGAGAGGGGACTGCTGAACCGGATGTTTGACCGAATTTTTGGAC AAGCAAATACCACGCTGAAGCGATGGCTGTTGGACTTCGCCTCCAAGAGGAAGGAAGCTG AGCTTCGCAGTGGCATCATTAGAAACAACAGCCTGTGGGATAAACTGATCTTCCACAAAA TACAGTCAAGCCTGGGAGGAAAAGTGAGGCTGATGGTCACAGGAGCGGCACCCGTGTCCG CCACCGTGCTGACCTTCCTGAGGGCCGCGCTGGGCTGCCAGTTCTACGAAGGCTACGGAC AGACGGAGTGCACAGCCGGGTGCAGCCTGACGGTGCCTGGGGACTGGAATACAGGCCATG TGGGCGCCCCAATGCCTTGCAGCCTTATAAAGCTGGTGGATGTGGAAGAAATGAATTACT TGGCTGCCAAGGGTGAGGGCGAGGTGAGTGAGACCCCACAATGACCCCCTCACTGTGGTT TCTTCATAGCAGGGCCACTTCTCAGCATGGGGCGTGGTGACCCTGGGGTCACACAGGTTT CTTTTTGAAGGTGCATTTATGTCTGCACTTTGAAGAGGTGTAGTGGGGGTGTGGGCATAG AAACCTGCCTTCTGCCCCCAGGCACGATGGGGACATGGGCCCAGGGGGTACAGAGGCTCC AGGGCCCGAAGTCCTGGGCTGCAGCTTCCTGTCTGCTCCTTGGCCTTGGTGCCTGTTAGT GGTGGAAGGGAGGCCTCTTTAATTAGTGATTTCATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTGAGCCCCTGTCCTGGGTGAGACTCCGTGTTAGGCTCTTAGGATGTGTTATATGCCC TTCAGCCCAGCAATATCCCTGTTACCTCTGGGAGGAAACGATTGATTGTTGGCTAAGAAG CATGACAATAACATATACGAATTTATGAAACTTTATGCCTTGGAGCCAGGATTCCAACCC AGGCCTGACCGCAAAGCTTCTGTGCTTACCCCATCCCACACGGGTGGTGTATTCTGCACT GTGATCATGAAGTCCCTGCTTTGTTTGCTGTATTACCCGTGTGAGCACGTCATGACATGG CTTCGAGTATCAGACGTTCTCTAGAAGCATAATTCTACTGGGATTGACACTAGCTGTCTA TGAACCTCTTTCAGAGTATCTGTTCACTCTTTAACCCCTGGTGCGCTACCAGCTGGAGAA TTTAGACGAGTAGCTTCTTTAAGCTAAAATGATCAAACATTTAACCTAAAATGATCAAAA CATAGGAAGAATGATTTGTGCCTCTCTTAAAACTTACCTGGTTCCTGTAATTTTTGTCTG GGGAAAAGAAGCCAATCCTAGCACCCTTTGGCAGGAGAGTTAAATGAGCTGTGAAAGGTA GCTTTGTCCTGTCATCATAAACTCACCTATAAAACGCATTCATCCACAGTCAAGGGCATC AGGCCGTGTTGGGCAGAACCATCTTCAGGCTACTTATGGATGATCTCAGAGAACGGGGCC ATGGCATCCATGTGAGGGAGAGGGGACTGCTGAACCGGATGTTTGACCGAATTTTTGGAC AAGCAAATACCACGCTGAAGCGATGGCTGTTGGACTTCGCCTCCAAGAGGAAGGAAGCTG AGCTTCGCAGTGGCATCATTAGAAACAACAGCCTGTGGGATAAACTGATCTTCCACAAAA TACAGTCAAGCCTGGGAGGAAAAGTGAGGCTGATGGTCACAGGAGCGGCACCCGTGTCCG CCACCGTGCTGACCTTCCTGAGGGCCGCGCTGGGCTGCCAGTTCTACGAAGGCTACGGAC AGACGGAGTGCACAGCCGGGTGCAGCCTGACGGTGCCTGGGGACTGGAATACAGGCCATG TGGGCGCCCCAATGCCTTGCAGCCTTATAAAGCTGGTGGATGTGGAAGAAATGAATTACT TGGCTGCCAAGGGTGAGGGCGAGGTGAGTGAGACCCCACAATGACCCCCTCACTGTGGTT TCTTCATAGCAGGGCCACTTCTCAGCATGGGGCGTGGTGACCCTGGGGTCACACAGGTTT CTTTTTGAAGGTGCATTTATGTCTGCACTTTGAAGAGGTGTAGTGGGGGTGTGGGCATAG AAACCTGCCTTCTGCCCCCAGGCACGATGGGGACATGGGCCCAGGGGGTACAGAGGCTCC AGGGCCCGAAGTCCTGGGCTGCAGCTTCCTGTCTGCTCCTTGGCCTTGGTGCCTGTTAGT GGTGGAAGGGAGGCCTCTTTAATTAGTGATTTCATA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 771-889, + strand, RNAz p=0.535307 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 771-889, + strand, RNAz p=0.535307 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 77-460, gnl|bosTau2|chr27 (10117071-10116690) | |
| 77-460, gnl|Hg17|chr4 (186060576-186060192) | |
| 771-905, gnl|bosTau2|chr27 (10119520-10119386) | |
| 771-905, gnl|canFam2|chr16 (48756243-48756101) | |
| 771-905, gnl|danRer3|chr1 (13608592-13608732) | |
| 771-905, gnl|dasNov1|scaffold_4054 (75668-75810) | |
| 771-905, gnl|echTel1|scaffold_307613 (3585-3726) | |
| 771-905, gnl|fr1|chrUn (86495421-86495562) | |
| 771-905, gnl|galGal2|chr4 (40073455-40073315) | |
| 771-905, gnl|hg17|chr4 (186062921-186063063) | |
| 771-905, gnl|Hg17|chr4 (186063059-186062925) | |
| 771-905, gnl|loxAfr1|scaffold_1749 (9554-9696) | |
| 771-905, gnl|mm7|chr8 (45304253-45304111) | |
| 771-905, gnl|Mm7|chr8 (45304113-45304247) | |
| 771-905, gnl|monDom2|scaffold_9 (66897727-66897869) | |
| 771-905, gnl|oryCun1|scaffold_186012 (97244-97102) | |
| 771-905, gnl|panTro1|chr3 (204268893-204269035) | |
| 771-905, gnl|rheMac2|chr5 (176860560-176860702) | |
| 771-905, gnl|rn3|chr16 (49048048-49048190) | |
| 771-905, gnl|tetNig1|chr2 (1028937-1028816) | |
| 771-905, gnl|xenTro1|scaffold_99 (1898502-1898642) | |
| 1071-1240, gnl|bosTau2|chr27 (10114719-10114549) | |
| 1071-1240, gnl|Hg17|chr4 (186059562-186059377) | |
| 1071-1240, gnl|Mm7|chr8 (45308252-45308429) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-460, gnl|bosTau2|chr27 (10117071-10116690) | |
| 77-460, gnl|Hg17|chr4 (186060576-186060192) | |
| 771-905, gnl|bosTau2|chr27 (10119520-10119386) | |
| 771-905, gnl|canFam2|chr16 (48756243-48756101) | |
| 771-905, gnl|danRer3|chr1 (13608592-13608732) | |
| 771-905, gnl|dasNov1|scaffold_4054 (75668-75810) | |
| 771-905, gnl|echTel1|scaffold_307613 (3585-3726) | |
| 771-905, gnl|fr1|chrUn (86495421-86495562) | |
| 771-905, gnl|galGal2|chr4 (40073455-40073315) | |
| 771-905, gnl|hg17|chr4 (186062921-186063063) | |
| 771-905, gnl|Hg17|chr4 (186063059-186062925) | |
| 771-905, gnl|loxAfr1|scaffold_1749 (9554-9696) | |
| 771-905, gnl|mm7|chr8 (45304253-45304111) | |
| 771-905, gnl|Mm7|chr8 (45304113-45304247) | |
| 771-905, gnl|monDom2|scaffold_9 (66897727-66897869) | |
| 771-905, gnl|oryCun1|scaffold_186012 (97244-97102) | |
| 771-905, gnl|panTro1|chr3 (204268893-204269035) | |
| 771-905, gnl|rheMac2|chr5 (176860560-176860702) | |
| 771-905, gnl|rn3|chr16 (49048048-49048190) | |
| 771-905, gnl|tetNig1|chr2 (1028937-1028816) | |
| 771-905, gnl|xenTro1|scaffold_99 (1898502-1898642) | |
| 1071-1240, gnl|bosTau2|chr27 (10114719-10114549) | |
| 1071-1240, gnl|Hg17|chr4 (186059562-186059377) | |
| 1071-1240, gnl|Mm7|chr8 (45308252-45308429) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| cly (0.120642) |