Ss1.1-Tra1-TCH01B040032.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCTCTTTCTGCAGTGCGAGCTCACGCTGTGTACCAAGAGGGAAAAGGAGCCCCAGAA GCTGCCTAAGTGCGTGCTGCCCGATGAAGCCTGCACCTCGCTGGACGCCTCCATGATCTG GGCCATGATGCAGAATAAGAAGACCTTCACCAAGCCCCTGGCCGTGATCCACCATGAAGT GCAGTTCAAAGAAACAGGTCCAAGCACGAAGGAATCGAATCCAATTTCTCCACCGATTTT TCATGGTCTGGACACACTCACCGTGATGGGCATCGCGTTCGCAGCGTTTGTGATCGGAGC TCTGCTGACGGGGGCCTTGTGGTACATCTACTCTCACACAGGAGACAGCGCAGGAAGGCA GCCCGTGCCCACCTCGCCGCCAGCCTCGGAGAACAGCAGCGCGGCGCACAGCCTGGGCAG CACGCAGAGCACCCCCTGCTCCAGCAGCAGCGCCGCCTAGCCCGCCGCCCGGATGCCCGC GCGTCCCCGTCGAGAGCCAACGGCAGTGGAACGGGCACCTGCTGTGCTCACCCCCCTCCC AGGGCGAGGCTAACTACGACCCCGGGCTTCTGTAACACCCTAGATCCATACGAGAAAGCT AAGGTGGTGGGTTTCTCCACCAGCCCCTCACAGGCCTGGGGCTTTCAATGTGAAACGCAT GCCAGTTCTTAAAATGCTGCTTTGTCCAGGTAAGAACATCCATAAGCTGGGGCCCTGCGT TTGACTCGGATGCAAGGAGCTGGTAAAAGTGTAACAGCCAGGTCGTAGAACCAGGGAGGG GAAGTGGCCCAACACTCTCTTATAACCAACGGAACCAAGGCGTAAAACGAAAGAAGCGTG GCAAGACTTTCCGCGTGTGTCCCTCCCCGGCTCCTTTGCACCTTCTGGATGCACACGTCC CACCTTGCTGGTACACGGGTGGGGACCCGTGTGTCGGCTCGATGGCTGCAGCCCTGGCGG GCTGCATCCTGACACACAGCCAGGTGACATTCCTTTCGTGCGCCCTGGGCCAAAACCAGC GCCCGGCGCCATGTCCGTTTCCTCCTCCCCGCCCTCTTGTACCCACTGCAGACACGTCTG AATGCAAATTTTGTATTTCTTTATAGGCTTTGGGAAAGCGAAAGTGGCCCACATCGGGGA CTGCAGATTCATGCCCATTTATGACATTGTGTTCTAATAAATGAATGTATCCATGGGGGC ACCATTCAGCTGTAAAGTCAAGGAGGAATTTGCACAGTGATGGACGTGCCAGTCCAAGTA GGTAATTTGTCATCTGGCACATTTGTTTTCTCAGTTGAAGAGAAAATTCCTTCCCGTTTT AAATATCCTACCCTTTCAGAGTTGGAATTTATTCTTAAATATTTTTGGGAGAATTAGTGT TTCCCCGCACAACGCGTCAAGCGTTTGAATAGACTCTTTTGTAGAAACCAAGCTCTTGTA AGATGCCAACGCCATGGCAGATCCTTTGGGATTCCAGTTGGTTATCTGACAGTGTCACCA AGCTCTGCCAAGAAGCCGTGAGGTATGGCAGAGGGCCCCTCTTTGGGATCACTTTCCTTC TTTGCTTAAACGTATTCCCCAAACTCAAAAAGGATTTGAGGTGAATTTTAATTAAAATGG AATAATACGATGCCACTTTGCAGCTAAAATAAGCTCAACTGGTACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCTCTTTCTGCAGTGCGAGCTCACGCTGTGTACCAAGAGGGAAAAGGAGCCCCAGAA GCTGCCTAAGTGCGTGCTGCCCGATGAAGCCTGCACCTCGCTGGACGCCTCCATGATCTG GGCCATGATGCAGAATAAGAAGACCTTCACCAAGCCCCTGGCCGTGATCCACCATGAAGT GCAGTTCAAAGAAACAGGTCCAAGCACGAAGGAATCGAATCCAATTTCTCCACCGATTTT TCATGGTCTGGACACACTCACCGTGATGGGCATCGCGTTCGCAGCGTTTGTGATCGGAGC TCTGCTGACGGGGGCCTTGTGGTACATCTACTCTCACACAGGAGACAGCGCAGGAAGGCA GCCCGTGCCCACCTCGCCGCCAGCCTCGGAGAACAGCAGCGCGGCGCACAGCCTGGGCAG CACGCAGAGCACCCCCTGCTCCAGCAGCAGCGCCGCCTAGCCCGCCGCCCGGATGCCCGC GCGTCCCCGTCGAGAGCCAACGGCAGTGGAACGGGCACCTGCTGTGCTCACCCCCCTCCC AGGGCGAGGCTAACTACGACCCCGGGCTTCTGTAACACCCTAGATCCATACGAGAAAGCT AAGGTGGTGGGTTTCTCCACCAGCCCCTCACAGGCCTGGGGCTTTCAATGTGAAACGCAT GCCAGTTCTTAAAATGCTGCTTTGTCCAGGTAAGAACATCCATAAGCTGGGGCCCTGCGT TTGACTCGGATGCAAGGAGCTGGTAAAAGTGTAACAGCCAGGTCGTAGAACCAGGGAGGG GAAGTGGCCCAACACTCTCTTATAACCAACGGAACCAAGGCGTAAAACGAAAGAAGCGTG GCAAGACTTTCCGCGTGTGTCCCTCCCCGGCTCCTTTGCACCTTCTGGATGCACACGTCC CACCTTGCTGGTACACGGGTGGGGACCCGTGTGTCGGCTCGATGGCTGCAGCCCTGGCGG GCTGCATCCTGACACACAGCCAGGTGACATTCCTTTCGTGCGCCCTGGGCCAAAACCAGC GCCCGGCGCCATGTCCGTTTCCTCCTCCCCGCCCTCTTGTACCCACTGCAGACACGTCTG AATGCAAATTTTGTATTTCTTTATAGGCTTTGGGAAAGCGAAAGTGGCCCACATCGGGGA CTGCAGATTCATGCCCATTTATGACATTGTGTTCTAATAAATGAATGTATCCATGGGGGC ACCATTCAGCTGTAAAGTCAAGGAGGAATTTGCACAGTGATGGACGTGCCAGTCCAAGTA GGTAATTTGTCATCTGGCACATTTGTTTTCTCAGTTGAAGAGAAAATTCCTTCCCGTTTT AAATATCCTACCCTTTCAGAGTTGGAATTTATTCTTAAATATTTTTGGGAGAATTAGTGT TTCCCCGCACAACGCGTCAAGCGTTTGAATAGACTCTTTTGTAGAAACCAAGCTCTTGTA AGATGCCAACGCCATGGCAGATCCTTTGGGATTCCAGTTGGTTATCTGACAGTGTCACCA AGCTCTGCCAAGAAGCCGTGAGGTATGGCAGAGGGCCCCTCTTTGGGATCACTTTCCTTC TTTGCTTAAACGTATTCCCCAAACTCAAAAAGGATTTGAGGTGAATTTTAATTAAAATGG AATAATACGATGCCACTTTGCAGCTAAAATAAGCTCAACTGGTACCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 530-646, - strand, RNAz p=0.913643 | |
| 886-1042, - strand, RNAz p=0.775506 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 530-646, - strand, RNAz p=0.913643 | |
| 886-1042, - strand, RNAz p=0.775506 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 69-191, gnl|bosTau2|chr3 (41978368-41978490) | |
| 69-191, gnl|canFam2|chr6 (60247722-60247603) | |
| 69-191, gnl|danRer3|chrNA (180317596-180317718) | |
| 69-191, gnl|galGal2|chr8 (14786707-14786591) | |
| 69-191, gnl|hg17|chr1 (91886242-91886361) | |
| 69-191, gnl|Hg17|chr1 (91886363-91886241) | |
| 69-191, gnl|loxAfr1|scaffold_150312 (4661-4780) | |
| 69-191, gnl|mm7|chr5 (106307801-106307917) | |
| 69-191, gnl|Mm7|chr5 (106307919-106307800) | |
| 69-191, gnl|monDom2|scaffold_87 (1915667-1915551) | |
| 69-191, gnl|oryCun1|scaffold_200956 (144977-145096) | |
| 69-191, gnl|panTro1|chr1 (90842724-90842843) | |
| 69-191, gnl|rheMac2|chr1 (94701500-94701619) | |
| 69-191, gnl|rn3|chr14 (3204032-3203916) | |
| 69-191, gnl|xenTro1|scaffold_36 (3129346-3129227) | |
| 235-345, gnl|bosTau2|chr3 (41989702-41989812) | |
| 235-345, gnl|canFam2|chr6 (60260473-60260369) | |
| 235-345, gnl|danRer3|chrNA (180305621-180305718) | |
| 235-345, gnl|dasNov1|scaffold_5545 (43030-43112) | |
| 235-345, gnl|echTel1|scaffold_314507 (29028-29139) | |
| 235-345, gnl|fr1|chrUn (189749962-189749864) | |
| 235-345, gnl|galGal2|chr8 (14792694-14792592) | |
| 235-345, gnl|hg17|chr1 (91873239-91873343) | |
| 235-345, gnl|Hg17|chr1 (91873356-91873246) | |
| 235-345, gnl|loxAfr1|scaffold_22131 (40965-40877) | |
| 235-345, gnl|mm7|chr5 (106295724-106295826) | |
| 235-345, gnl|Mm7|chr5 (106295839-106295729) | |
| 235-345, gnl|monDom2|scaffold_87 (1923247-1923143) | |
| 235-345, gnl|oryCun1|scaffold_200956 (132923-133027) | |
| 235-345, gnl|panTro1|chr1 (90829699-90829803) | |
| 235-345, gnl|rheMac2|chr1 (94688619-94688723) | |
| 235-345, gnl|rn3|chr14 (3216431-3216329) | |
| 235-345, gnl|tetNig1|chr1_random (579469-579567) | |
| 492-1668, gnl|bosTau2|chr3 (42000030-42001205) | |
| 492-1668, gnl|Hg17|chr1 (91861191-91860010) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-191, gnl|bosTau2|chr3 (41978368-41978490) | |
| 69-191, gnl|canFam2|chr6 (60247722-60247603) | |
| 69-191, gnl|danRer3|chrNA (180317596-180317718) | |
| 69-191, gnl|galGal2|chr8 (14786707-14786591) | |
| 69-191, gnl|hg17|chr1 (91886242-91886361) | |
| 69-191, gnl|Hg17|chr1 (91886363-91886241) | |
| 69-191, gnl|loxAfr1|scaffold_150312 (4661-4780) | |
| 69-191, gnl|mm7|chr5 (106307801-106307917) | |
| 69-191, gnl|Mm7|chr5 (106307919-106307800) | |
| 69-191, gnl|monDom2|scaffold_87 (1915667-1915551) | |
| 69-191, gnl|oryCun1|scaffold_200956 (144977-145096) | |
| 69-191, gnl|panTro1|chr1 (90842724-90842843) | |
| 69-191, gnl|rheMac2|chr1 (94701500-94701619) | |
| 69-191, gnl|rn3|chr14 (3204032-3203916) | |
| 69-191, gnl|xenTro1|scaffold_36 (3129346-3129227) | |
| 235-345, gnl|bosTau2|chr3 (41989702-41989812) | |
| 235-345, gnl|canFam2|chr6 (60260473-60260369) | |
| 235-345, gnl|danRer3|chrNA (180305621-180305718) | |
| 235-345, gnl|dasNov1|scaffold_5545 (43030-43112) | |
| 235-345, gnl|echTel1|scaffold_314507 (29028-29139) | |
| 235-345, gnl|fr1|chrUn (189749962-189749864) | |
| 235-345, gnl|galGal2|chr8 (14792694-14792592) | |
| 235-345, gnl|hg17|chr1 (91873239-91873343) | |
| 235-345, gnl|Hg17|chr1 (91873356-91873246) | |
| 235-345, gnl|loxAfr1|scaffold_22131 (40965-40877) | |
| 235-345, gnl|mm7|chr5 (106295724-106295826) | |
| 235-345, gnl|Mm7|chr5 (106295839-106295729) | |
| 235-345, gnl|monDom2|scaffold_87 (1923247-1923143) | |
| 235-345, gnl|oryCun1|scaffold_200956 (132923-133027) | |
| 235-345, gnl|panTro1|chr1 (90829699-90829803) | |
| 235-345, gnl|rheMac2|chr1 (94688619-94688723) | |
| 235-345, gnl|rn3|chr14 (3216431-3216329) | |
| 235-345, gnl|tetNig1|chr1_random (579469-579567) | |
| 492-1668, gnl|bosTau2|chr3 (42000030-42001205) | |
| 492-1668, gnl|Hg17|chr1 (91861191-91860010) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| sme (0.305437) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| fat (0.147427) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| med (0.116252) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| fat (0.147427) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| med (0.116252) |