Ss1.1-Tra1-TCH01B040040.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGGGCCGTGTGTGCTTTGAGATGAAGATCAATGAGGAAATCTCTGTCAAGCACCTTC CGTCTACAGAGCCTGACCCCCATGTTGTCCGTATTGGTTGGTCCCTGGACTCCTGCAGCA CTCAGCTAGGCGAAGAGCCTTTCTCCTATGGCTATGGAGGCACTGGGAAGAAGTCCACCA ACAGCCGGTTTGAAAACTACGGAGACAAGTTCGCAGAGAATGATGTGATTGGCTGCTTTG TGGACTTTGAATGTGGAAATGACGTGGAACTTTCCTTCACCAAAAATGGAAAGTGGATGG GCATTGCCTTCCGAATCCAGAAGGAAGCTTTAGGGGGCCAGGCCCTCTACCCTCATGTCC TGGTCAAGAATTGCGCAGTAGAGTTCAACTTCGGGCAGAGGGCGGAACCCTACTGTTCTG TTCTCCCAGGCTTCACTTTCATCCAGCACCTTCCCCTGAGCGAGCGAATCAGGGGCACCG TTGGACCAAAGAGCAAGGCAGAGTGTGAGATTCTGATGATGGTGGGCCTGCCTGCTGCTG GTAAGACCACATGGGCCATCAAACATGCAGCCTCCAACCCCTCCAAGAAGTACAACATCC TGGGTACCAACGCCATCATGGATAAGATGCGGGTGATGGGCCTACGCCGGCAGCGGAACT ATGCTGGCCGCTGGGACGTCCTGATCCAGCAGGCCACCCAGTGCCTCAACCGCCTCATCC AGATAGCCGCCCGCAAGAAACGCAACTACATCCTAGATCAGACAAATGTTTATGGGTCAG CCCAGAGACGAAAAATGAGACCATTTGAAGGCTTCCAGCGCAAAGCTATTGTAATTTGTC CCACTGATGAGGACCTCAAAGACCGAACAATAAAGCGGACCGATGAAGAAGGGAAGGACG TCCCAGATCATGCGGTCCTGGAAATGAAAGCCAACTTCACGTTGCCAGATGTTGGGGACT TCCTGGATGAGGTTCTGTTCATTGAGCTGCAGCGGGAGGAAGCAGACAAGCTGGTGAGGC AATACAACGAGGAAGGCCGCAAGGCTGGCCCCCCCCCCGAAAAGCGTTTCGACAACCGAG GCGGTGGAGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGGGCCGTGTGTGCTTTGAGATGAAGATCAATGAGGAAATCTCTGTCAAGCACCTTC CGTCTACAGAGCCTGACCCCCATGTTGTCCGTATTGGTTGGTCCCTGGACTCCTGCAGCA CTCAGCTAGGCGAAGAGCCTTTCTCCTATGGCTATGGAGGCACTGGGAAGAAGTCCACCA ACAGCCGGTTTGAAAACTACGGAGACAAGTTCGCAGAGAATGATGTGATTGGCTGCTTTG TGGACTTTGAATGTGGAAATGACGTGGAACTTTCCTTCACCAAAAATGGAAAGTGGATGG GCATTGCCTTCCGAATCCAGAAGGAAGCTTTAGGGGGCCAGGCCCTCTACCCTCATGTCC TGGTCAAGAATTGCGCAGTAGAGTTCAACTTCGGGCAGAGGGCGGAACCCTACTGTTCTG TTCTCCCAGGCTTCACTTTCATCCAGCACCTTCCCCTGAGCGAGCGAATCAGGGGCACCG TTGGACCAAAGAGCAAGGCAGAGTGTGAGATTCTGATGATGGTGGGCCTGCCTGCTGCTG GTAAGACCACATGGGCCATCAAACATGCAGCCTCCAACCCCTCCAAGAAGTACAACATCC TGGGTACCAACGCCATCATGGATAAGATGCGGGTGATGGGCCTACGCCGGCAGCGGAACT ATGCTGGCCGCTGGGACGTCCTGATCCAGCAGGCCACCCAGTGCCTCAACCGCCTCATCC AGATAGCCGCCCGCAAGAAACGCAACTACATCCTAGATCAGACAAATGTTTATGGGTCAG CCCAGAGACGAAAAATGAGACCATTTGAAGGCTTCCAGCGCAAAGCTATTGTAATTTGTC CCACTGATGAGGACCTCAAAGACCGAACAATAAAGCGGACCGATGAAGAAGGGAAGGACG TCCCAGATCATGCGGTCCTGGAAATGAAAGCCAACTTCACGTTGCCAGATGTTGGGGACT TCCTGGATGAGGTTCTGTTCATTGAGCTGCAGCGGGAGGAAGCAGACAAGCTGGTGAGGC AATACAACGAGGAAGGCCGCAAGGCTGGCCCCCCCCCCGAAAAGCGTTTCGACAACCGAG GCGGTGGAGGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 242-440, + strand, RNAz p=0.934101 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 242-440, + strand, RNAz p=0.934101 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 28-130, gnl|bosTau2|chr18 (45767088-45767190) | |
| 28-130, gnl|canFam2|chr1 (115593647-115593513) | |
| 28-130, gnl|danRer3|chr5 (68413055-68413186) | |
| 28-130, gnl|dasNov1|scaffold_17851 (47669-47535) | |
| 28-130, gnl|echTel1|scaffold_231215 (1381-1250) | |
| 28-130, gnl|fr1|chrUn (97518510-97518644) | |
| 28-130, gnl|galGal2|chr3 (30968074-30968180) | |
| 28-130, gnl|hg17|chr19 (46476798-46476932) | |
| 28-130, gnl|Hg17|chr19 (46476820-46476922) | |
| 28-130, gnl|loxAfr1|scaffold_15630 (13558-13692) | |
| 28-130, gnl|mm7|chr7 (22517084-22516951) | |
| 28-130, gnl|Mm7|chr7 (22517060-22516958) | |
| 28-130, gnl|monDom2|scaffold_149 (840487-840619) | |
| 28-130, gnl|oryCun1|scaffold_189143 (61005-60871) | |
| 28-130, gnl|panTro1|chr20 (43460956-43461090) | |
| 28-130, gnl|rheMac2|chr19 (47670606-47670740) | |
| 28-130, gnl|rn3|chr1 (81026732-81026598) | |
| 28-130, gnl|tetNig1|chr16 (6162332-6162467) | |
| 242-534, gnl|bosTau2|chr18 (45774681-45774972) | |
| 242-534, gnl|canFam2|chr1 (115587515-115587281) | |
| 242-534, gnl|danRer3|chr5 (68413494-68413728) | |
| 242-534, gnl|dasNov1|scaffold_123488 (1752-1522) | |
| 242-534, gnl|echTel1|scaffold_198152 (7102-6868) | |
| 242-534, gnl|fr1|chrUn (97518955-97519189) | |
| 242-534, gnl|galGal2|chr3 (30969731-30969958) | |
| 242-534, gnl|hg17|chr19 (46489985-46490219) | |
| 242-534, gnl|Hg17|chr19 (46489989-46490278) | |
| 242-534, gnl|loxAfr1|scaffold_15630 (21160-21399) | |
| 242-534, gnl|mm7|chr7 (22508864-22508630) | |
| 242-534, gnl|Mm7|chr7 (22508858-22508567) | |
| 242-534, gnl|monDom2|scaffold_149 (844847-845081) | |
| 242-534, gnl|oryCun1|scaffold_189143 (52998-52764) | |
| 242-534, gnl|panTro1|chr20 (43473825-43474059) | |
| 242-534, gnl|rheMac2|chr19 (47685093-47685327) | |
| 242-534, gnl|rn3|chr1 (81018589-81018355) | |
| 242-534, gnl|tetNig1|chr16 (6162775-6163009) | |
| 242-534, gnl|xenTro1|scaffold_679 (250215-250446) | |
| 244-508, gnl|bosTau2|chr16 (20526069-20525808) | |
| 244-508, gnl|Hg17|chr1 (241347616-241347355) | |
| 244-508, gnl|Mm7|chr1 (178312880-178312619) | |
| 760-933, gnl|bosTau2|chr16 (20524999-20524826) | |
| 760-933, gnl|canFam2|chr7 (38806273-38806456) | |
| 760-933, gnl|danRer3|chr20 (31829819-31830007) | |
| 760-933, gnl|dasNov1|scaffold_5984 (30459-30293) | |
| 760-933, gnl|echTel1|scaffold_297958 (11522-11708) | |
| 760-933, gnl|fr1|chrUn (182797046-182796872) | |
| 760-933, gnl|galGal2|chr3 (30971438-30971253) | |
| 760-933, gnl|hg17|chr1 (241345788-241345974) | |
| 760-933, gnl|Hg17|chr1 (241345970-241345797) | |
| 760-933, gnl|loxAfr1|scaffold_13115 (23425-23240) | |
| 760-933, gnl|mm7|chr1 (178311603-178311792) | |
| 760-933, gnl|Mm7|chr1 (178311788-178311615) | |
| 760-933, gnl|monDom2|scaffold_13 (38642679-38642493) | |
| 760-933, gnl|oryCun1|scaffold_210527 (11752-11944) | |
| 760-933, gnl|panTro1|chr1 (225357494-225357680) | |
| 760-933, gnl|rheMac2|chr1 (212209731-212209545) | |
| 760-933, gnl|rn3|chr13 (94170306-94170495) | |
| 760-933, gnl|tetNig1|chr14 (8979341-8979516) | |
| 760-933, gnl|xenTro1|scaffold_1030 (97501-97316) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-130, gnl|bosTau2|chr18 (45767088-45767190) | |
| 28-130, gnl|canFam2|chr1 (115593647-115593513) | |
| 28-130, gnl|danRer3|chr5 (68413055-68413186) | |
| 28-130, gnl|dasNov1|scaffold_17851 (47669-47535) | |
| 28-130, gnl|echTel1|scaffold_231215 (1381-1250) | |
| 28-130, gnl|fr1|chrUn (97518510-97518644) | |
| 28-130, gnl|galGal2|chr3 (30968074-30968180) | |
| 28-130, gnl|hg17|chr19 (46476798-46476932) | |
| 28-130, gnl|Hg17|chr19 (46476820-46476922) | |
| 28-130, gnl|loxAfr1|scaffold_15630 (13558-13692) | |
| 28-130, gnl|mm7|chr7 (22517084-22516951) | |
| 28-130, gnl|Mm7|chr7 (22517060-22516958) | |
| 28-130, gnl|monDom2|scaffold_149 (840487-840619) | |
| 28-130, gnl|oryCun1|scaffold_189143 (61005-60871) | |
| 28-130, gnl|panTro1|chr20 (43460956-43461090) | |
| 28-130, gnl|rheMac2|chr19 (47670606-47670740) | |
| 28-130, gnl|rn3|chr1 (81026732-81026598) | |
| 28-130, gnl|tetNig1|chr16 (6162332-6162467) | |
| 242-534, gnl|bosTau2|chr18 (45774681-45774972) | |
| 242-534, gnl|canFam2|chr1 (115587515-115587281) | |
| 242-534, gnl|danRer3|chr5 (68413494-68413728) | |
| 242-534, gnl|dasNov1|scaffold_123488 (1752-1522) | |
| 242-534, gnl|echTel1|scaffold_198152 (7102-6868) | |
| 242-534, gnl|fr1|chrUn (97518955-97519189) | |
| 242-534, gnl|galGal2|chr3 (30969731-30969958) | |
| 242-534, gnl|hg17|chr19 (46489985-46490219) | |
| 242-534, gnl|Hg17|chr19 (46489989-46490278) | |
| 242-534, gnl|loxAfr1|scaffold_15630 (21160-21399) | |
| 242-534, gnl|mm7|chr7 (22508864-22508630) | |
| 242-534, gnl|Mm7|chr7 (22508858-22508567) | |
| 242-534, gnl|monDom2|scaffold_149 (844847-845081) | |
| 242-534, gnl|oryCun1|scaffold_189143 (52998-52764) | |
| 242-534, gnl|panTro1|chr20 (43473825-43474059) | |
| 242-534, gnl|rheMac2|chr19 (47685093-47685327) | |
| 242-534, gnl|rn3|chr1 (81018589-81018355) | |
| 242-534, gnl|tetNig1|chr16 (6162775-6163009) | |
| 242-534, gnl|xenTro1|scaffold_679 (250215-250446) | |
| 244-508, gnl|bosTau2|chr16 (20526069-20525808) | |
| 244-508, gnl|Hg17|chr1 (241347616-241347355) | |
| 244-508, gnl|Mm7|chr1 (178312880-178312619) | |
| 760-933, gnl|bosTau2|chr16 (20524999-20524826) | |
| 760-933, gnl|canFam2|chr7 (38806273-38806456) | |
| 760-933, gnl|danRer3|chr20 (31829819-31830007) | |
| 760-933, gnl|dasNov1|scaffold_5984 (30459-30293) | |
| 760-933, gnl|echTel1|scaffold_297958 (11522-11708) | |
| 760-933, gnl|fr1|chrUn (182797046-182796872) | |
| 760-933, gnl|galGal2|chr3 (30971438-30971253) | |
| 760-933, gnl|hg17|chr1 (241345788-241345974) | |
| 760-933, gnl|Hg17|chr1 (241345970-241345797) | |
| 760-933, gnl|loxAfr1|scaffold_13115 (23425-23240) | |
| 760-933, gnl|mm7|chr1 (178311603-178311792) | |
| 760-933, gnl|Mm7|chr1 (178311788-178311615) | |
| 760-933, gnl|monDom2|scaffold_13 (38642679-38642493) | |
| 760-933, gnl|oryCun1|scaffold_210527 (11752-11944) | |
| 760-933, gnl|panTro1|chr1 (225357494-225357680) | |
| 760-933, gnl|rheMac2|chr1 (212209731-212209545) | |
| 760-933, gnl|rn3|chr13 (94170306-94170495) | |
| 760-933, gnl|tetNig1|chr14 (8979341-8979516) | |
| 760-933, gnl|xenTro1|scaffold_1030 (97501-97316) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.13552) | |
| eep (0.122564) |