Non-Coding RNA Search

Ss1.1-Tra1-TCH01B040065.5

Sequence:


               
               TGGATTTGGTCCCGCCTCGTCTGCGGCCCGGGCGGGTGCGGGGGTCGCTGGCCAGGCTCC
CAACCCCCGCTACGCCTTGGAAAACGTATCCTTCCAGACTGGGCCCGGACATTACTGGCG
CCGCGGCAACCTCGGCTGAGACTGCGGGTGCTGGACAGCGGGAGCTGCAGAACTCCCGGC
GGGGCGGGGTCCAGGGGAGAGGCCGCCTCAGCCCCCGGCCTTGTGGTGCGCGCGCGGTTA
AACACCAAGCGAGGCCAAGACGGAAGGAAATGGTAGCCGAGCATTGGGCGAAGGCACAGG
ATTACTTGGGCTGCTATTTTGAAGTGGGACAGAAGATGATCAAGGCTTGATGCAGGAAGA
CCCTTTAGATGGATACTCCACGATCCAGGGCATCCAAAAGAGCTGATGAACTGAATTGGG
AAGCTGAGGAAAGCCACAAGCTTTAGGTGAGGATGAAATTCTACTGAAGAATCTGGATGA
CAGAGCAGATCTAATCTATTTCCAAGAACATCTGGTCAGCGATTGACTTCAACACAACCT
TTGACTCAATAGCGAGAGCCACACATTTAGGAACTCCAAGGAAATCTCAGCTAGAGCCCA
GTTTCAAGAAATGTGACAGCACTCTTGTGAGCCAAACCACAAGAATGTGGCAAGTGTGTG
CAACTGAGTAGCACATAGAAGAAAGAGAAGTCTACATAGCTGAAGTGGACGCCCTCAGTC
TCCATCCATGCTACTGAAATTCCTAAAAGAATCACCACTGTGATGGAGCCTATTATCCGG
ATGTCATTGGTTGGATCCACCATCATCGAATCACTCTCCTGGAGCAAAAAAAAAAAAAAA
AAAAAAGTATATATATATATATATATATATATATATATCAAAATGGTTAGAGATGGAGAT
TTTTTTTTTTTTTGGCCTGTATGTCTTATGTGGCATTTAATAGTAAGAAGAAATATACAC
TAATATCTGGGGCTACACAGGAAAATAAAATAATGAAATGCTCATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATTTGGTCCCGCCTCGTCTGCGGCCCGGGCGGGTGCGGGGGTCGCTGGCCAGGCTCC
CAACCCCCGCTACGCCTTGGAAAACGTATCCTTCCAGACTGGGCCCGGACATTACTGGCG
CCGCGGCAACCTCGGCTGAGACTGCGGGTGCTGGACAGCGGGAGCTGCAGAACTCCCGGC
GGGGCGGGGTCCAGGGGAGAGGCCGCCTCAGCCCCCGGCCTTGTGGTGCGCGCGCGGTTA
AACACCAAGCGAGGCCAAGACGGAAGGAAATGGTAGCCGAGCATTGGGCGAAGGCACAGG
ATTACTTGGGCTGCTATTTTGAAGTGGGACAGAAGATGATCAAGGCTTGATGCAGGAAGA
CCCTTTAGATGGATACTCCACGATCCAGGGCATCCAAAAGAGCTGATGAACTGAATTGGG
AAGCTGAGGAAAGCCACAAGCTTTAGGTGAGGATGAAATTCTACTGAAGAATCTGGATGA
CAGAGCAGATCTAATCTATTTCCAAGAACATCTGGTCAGCGATTGACTTCAACACAACCT
TTGACTCAATAGCGAGAGCCACACATTTAGGAACTCCAAGGAAATCTCAGCTAGAGCCCA
GTTTCAAGAAATGTGACAGCACTCTTGTGAGCCAAACCACAAGAATGTGGCAAGTGTGTG
CAACTGAGTAGCACATAGAAGAAAGAGAAGTCTACATAGCTGAAGTGGACGCCCTCAGTC
TCCATCCATGCTACTGAAATTCCTAAAAGAATCACCACTGTGATGGAGCCTATTATCCGG
ATGTCATTGGTTGGATCCACCATCATCGAATCACTCTCCTGGAGCAAAAAAAAAAAAAAA
AAAAAAGTATATATATATATATATATATATATATATATCAAAATGGTTAGAGATGGAGAT
TTTTTTTTTTTTTGGCCTGTATGTCTTATGTGGCATTTAATAGTAAGAAGAAATATACAC
TAATATCTGGGGCTACACAGGAAAATAAAATAATGAAATGCTCATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               721-837, - strand, RNAz p=0.773528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               721-837, - strand, RNAz p=0.773528

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               7-300, gnl|bosTau2|chr10 (42841199-42841518)
               

               
               7-300, gnl|Hg17|chr15 (46411318-46411013)
               


               
               721-837, gnl|bosTau2|chr10 (42984640-42984756)
               

               
               721-837, gnl|Hg17|chr15 (46309979-46309866)
               

               
               721-837, gnl|Mm7|chr2 (124911607-124911496)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-300, gnl|bosTau2|chr10 (42841199-42841518)
               

               
               7-300, gnl|Hg17|chr15 (46411318-46411013)
               


               
               721-837, gnl|bosTau2|chr10 (42984640-42984756)
               

               
               721-837, gnl|Hg17|chr15 (46309979-46309866)
               

               
               721-837, gnl|Mm7|chr2 (124911607-124911496)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               isp (0.150376)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               ute (0.132784)

	7-300, gnl\|bosTau2\|chr10 (42841199-42841518)
	7-300, gnl\|Hg17\|chr15 (46411318-46411013)

	721-837, gnl\|bosTau2\|chr10 (42984640-42984756)
	721-837, gnl\|Hg17\|chr15 (46309979-46309866)
	721-837, gnl\|Mm7\|chr2 (124911607-124911496)