Non-Coding RNA Search

Ss1.1-Tra1-TCH01B050048.5

Sequence:


               
               TCAGGGCTCGGCTCTGTGCCTGCTCCTTTCTCTCTCTTCCCAGCAATGCACAGGGTTGAC
TCTTATTAATTAAAGCATCCTCTTTTGAAATGGATCAGTGCCCAGGGAGAGACAGCAAAA
CTCCACTCTTCACAATGGTCCTAACTAGACAAACCAAATACACAGTCAACTACAAATCTG
ATCACACTCAAGCAGAGCACGCAGCCTTTGGAACACAGAGGCTCACACATCATGGGAACC
CTAGAATGCCTGCTCTTCCCTGTTCTTGTTCCAATTCACGGTTTTCTAGGCAGACAATAG
GACAAAGCTACATTTTAGCTCAGGCTGCTAATACCAGCAGACAGATGTGTAAGACTGAGG
TTTACTCACCAAGCTCCCGTAAGTCCATCTTTCCCTACTACAAATACTGCTTCTAAGCCG
CTGTCACCACCAAAAGACTTAAAGTCGTCCCCCTGAAGAGCAACGTGCTGGAATACCAGA
TGGTTCCTGAGTAAGCTTGTTCACGAAATAGATTTCCAGTTGAGCCATGTGAATGGAGAC
CCGCCGCACACCTTTGAATGGTATACACTTCAAGTCCAGAAGAATAAGCATGTAGCTTTG
CTTATGTTTATGGAGCTGGAGCCCAGGGGTGCTCCGATTGGCAGGAATCGCAGAAAGATC
AGCCAATCAAAGGGAGCTTCCATTTCAGGGAAACTCCTGCTCATTTATTTAGCATCTTCA
GAGATCATCGGCTTTTCAAGGAAGAGATTTTCTCTTGGAGTAGCACAAGAGAAAACAATA
AGTTCATTTAATTTTAGTGCCCTATGCTCTTTCATCAATAATGATATAGTGCTTCTGAGT
GCTCTCAATATTCCCACTTTCCTTATAAAGAACTAAAAACAAAGGAAAAGAGGAAGAAGA
AGAAGAAGAAGGAGAAGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGGGCTCGGCTCTGTGCCTGCTCCTTTCTCTCTCTTCCCAGCAATGCACAGGGTTGAC
TCTTATTAATTAAAGCATCCTCTTTTGAAATGGATCAGTGCCCAGGGAGAGACAGCAAAA
CTCCACTCTTCACAATGGTCCTAACTAGACAAACCAAATACACAGTCAACTACAAATCTG
ATCACACTCAAGCAGAGCACGCAGCCTTTGGAACACAGAGGCTCACACATCATGGGAACC
CTAGAATGCCTGCTCTTCCCTGTTCTTGTTCCAATTCACGGTTTTCTAGGCAGACAATAG
GACAAAGCTACATTTTAGCTCAGGCTGCTAATACCAGCAGACAGATGTGTAAGACTGAGG
TTTACTCACCAAGCTCCCGTAAGTCCATCTTTCCCTACTACAAATACTGCTTCTAAGCCG
CTGTCACCACCAAAAGACTTAAAGTCGTCCCCCTGAAGAGCAACGTGCTGGAATACCAGA
TGGTTCCTGAGTAAGCTTGTTCACGAAATAGATTTCCAGTTGAGCCATGTGAATGGAGAC
CCGCCGCACACCTTTGAATGGTATACACTTCAAGTCCAGAAGAATAAGCATGTAGCTTTG
CTTATGTTTATGGAGCTGGAGCCCAGGGGTGCTCCGATTGGCAGGAATCGCAGAAAGATC
AGCCAATCAAAGGGAGCTTCCATTTCAGGGAAACTCCTGCTCATTTATTTAGCATCTTCA
GAGATCATCGGCTTTTCAAGGAAGAGATTTTCTCTTGGAGTAGCACAAGAGAAAACAATA
AGTTCATTTAATTTTAGTGCCCTATGCTCTTTCATCAATAATGATATAGTGCTTCTGAGT
GCTCTCAATATTCCCACTTTCCTTATAAAGAACTAAAAACAAAGGAAAAGAGGAAGAAGA
AGAAGAAGAAGGAGAAGAAGAAGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAAGTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               520-719, - strand, RNAz p=0.99474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               520-719, - strand, RNAz p=0.99474

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               618-745, + strand, RNAmicro p=0.960709

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               618-745, + strand, RNAmicro p=0.960709

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               520-719, CJ025998 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ025998.1|), blast E-value=0, identity=100% 
               

               
               520-719, DA487166 FCBBF2 Homo sapiens cDNA clone FCBBF2005002 5', mRNA 
(dbj|DA487166.1|), blast E-value=0, identity=95% 
               

               
               520-719, DA689856 NT2NE2 Homo sapiens cDNA clone NT2NE2009089 5', mRNA 
(dbj|DA689856.1|), blast E-value=0, identity=95% 
               

               
               520-719, DA753840 NT2RP7 Homo sapiens cDNA clone NT2RP7020135 5', mRNA 
(dbj|DA753840.1|), blast E-value=0, identity=95% 
               

               
               520-719, DA771243 OCBBF2 Homo sapiens cDNA clone OCBBF2004209 5', mRNA 
(dbj|DA771243.1|), blast E-value=0, identity=95% 
               

               
               520-719, LB0283.CR_B22 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV907543.1|), 
blast E-value=0, identity=96%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               520-719, CJ025998 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ025998.1|), blast E-value=0, identity=100% 
               

               
               520-719, DA487166 FCBBF2 Homo sapiens cDNA clone FCBBF2005002 5', mRNA 
(dbj|DA487166.1|), blast E-value=0, identity=95% 
               

               
               520-719, DA689856 NT2NE2 Homo sapiens cDNA clone NT2NE2009089 5', mRNA 
(dbj|DA689856.1|), blast E-value=0, identity=95% 
               

               
               520-719, DA753840 NT2RP7 Homo sapiens cDNA clone NT2RP7020135 5', mRNA 
(dbj|DA753840.1|), blast E-value=0, identity=95% 
               

               
               520-719, DA771243 OCBBF2 Homo sapiens cDNA clone OCBBF2004209 5', mRNA 
(dbj|DA771243.1|), blast E-value=0, identity=95% 
               

               
               520-719, LB0283.CR_B22 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV907543.1|), 
blast E-value=0, identity=96%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_130442, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_130442, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               63-901, gnl|bosTau2|chr4 (32597298-32598160)
               

               
               63-901, gnl|Hg17|chr7 (36798534-36799316)
               

               
               63-901, gnl|Mm7|chr13 (19841396-19840637)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-901, gnl|bosTau2|chr4 (32597298-32598160)
               

               
               63-901, gnl|Hg17|chr7 (36798534-36799316)
               

               
               63-901, gnl|Mm7|chr13 (19841396-19840637)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ova (0.129132)

	520-719, CJ025998 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ025998.1\|), blast E-value=0, identity=100%
	520-719, DA487166 FCBBF2 Homo sapiens cDNA clone FCBBF2005002 5', mRNA (dbj\|DA487166.1\|), blast E-value=0, identity=95%
	520-719, DA689856 NT2NE2 Homo sapiens cDNA clone NT2NE2009089 5', mRNA (dbj\|DA689856.1\|), blast E-value=0, identity=95%
	520-719, DA753840 NT2RP7 Homo sapiens cDNA clone NT2RP7020135 5', mRNA (dbj\|DA753840.1\|), blast E-value=0, identity=95%
	520-719, DA771243 OCBBF2 Homo sapiens cDNA clone OCBBF2004209 5', mRNA (dbj\|DA771243.1\|), blast E-value=0, identity=95%
	520-719, LB0283.CR_B22 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV907543.1\|), blast E-value=0, identity=96%

	63-901, gnl\|bosTau2\|chr4 (32597298-32598160)
	63-901, gnl\|Hg17\|chr7 (36798534-36799316)
	63-901, gnl\|Mm7\|chr13 (19841396-19840637)