Non-Coding RNA Search

Ss1.1-Tra1-TCH01B060047.5

Sequence:


               
               GTGCAGTCTGTCCAGGATGAGGTTCCTGGTTGCGTTTGTCTTGCTGAGCGTCGCAGCGGA
GGACTCCGTGCCGTCAAGTTCTGTGCCAGCCTCCACAATACCCACTCTGAGGGTAAGTCA
GTCTACTGGAGACTCCAAGCTCGTAACCGCAGAACTGCCTTCTCAGTCAGACAAAGTAGA
CAGATCCATTCCGAAACAAAACACCGGGGAAGTCAGCCCTGACAAGTCGAAACTGGAGCC
AAACACCACGAATGACAGCCCTCACAAATCGAAATCTCAAGAGCATATCACGAATGTCGA
CCATAACAACAACACAAATGTTGACCCTGGCAAGTCGAAAACGGAGCCGCACTCCACGAA
TGACAGCTCTGACAGAGCGACATCTGAGGACCCTGCTGTGGATGGCAACCCTGACAAGTT
GGAACTGAAGCAGGACATCACGAATAATGGCTCTGGCAAGGGGAAATCTGAAGAGCATAC
TGCCACAATTGAGGACCCTAGCAAACTGGAACTGGAGCAGCTTTCTTCCAAAGACCACTC
CGGCAATCCAATCTCCAACCCCTCTTCTGATAACAAGGAGCCTGCTGTAAATCCATCAGC
TGACAAAGCTCTGCAGTCTCCTAGAACTAAACCTGTGGAAAAAGGATTACTGGACTTGGA
CTCCTCTTCTCCCCAGCAGGAGGGAGAAGGTAAGTCTTTAGAGCCAGCTGAAGTTGTGGA
GCCCAAGGAGACTGAAGAAGGGGATACAGAGCCTGAAGAGGATATACCACCCAAAGAAGA
GAAAGAAATGCCTGGCCCTGCCTCCAGTGAGAACCGTGAAGGGGCACTTTCGAAACCCTT
GGATAAGGAGAAGGATGACGTTTATAAGGATAATCTTGGAAATGCCAGTGCAGAGAGCAG
CCACTTCTTTGCATATCTGGTGACGGCAGCCATTCTCGTCGCTGTCCTCTATATTGCCTA
CCACAATAAGCGGAAGATTATTGCTTTCGTCCTGGAAGGAAAAAGATCCAAAGTCACACG
GCGGCCAAAGGCCAGTGATTACCAGCGTTTGGACCAGAAGATTTGAATTTTCTGTTCTTG
AGAACCATGTCCTCCCTGCTGATTTGTTTCTAAGTCAAGAAAAATGAAGAGAAAAATACT
GTGACCTAAGAGAGACCCCCTGCTCTCGGGTTTGGTGGCGAGTCTGGCAGAGGCAGGGGG
GGATTGCTTTGGTTTTTGCACCTGCACTTTGGTGACCTTGTCCTCCTGTGTTCCTGTTAT
TTATGCTGGTGTCTTCCAGCCTGTCCCCCTCTGAGTGTGAGTAGAGGAGCATGTGGGTAC
CCAGCAGTGACCAAAGGAAGACCCCAGCCCTCAGCAGGTGCTCGCTGCTGACTGCCCTCT
GTGGGACCTTGGCCTTGTGGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCAGTCTGTCCAGGATGAGGTTCCTGGTTGCGTTTGTCTTGCTGAGCGTCGCAGCGGA
GGACTCCGTGCCGTCAAGTTCTGTGCCAGCCTCCACAATACCCACTCTGAGGGTAAGTCA
GTCTACTGGAGACTCCAAGCTCGTAACCGCAGAACTGCCTTCTCAGTCAGACAAAGTAGA
CAGATCCATTCCGAAACAAAACACCGGGGAAGTCAGCCCTGACAAGTCGAAACTGGAGCC
AAACACCACGAATGACAGCCCTCACAAATCGAAATCTCAAGAGCATATCACGAATGTCGA
CCATAACAACAACACAAATGTTGACCCTGGCAAGTCGAAAACGGAGCCGCACTCCACGAA
TGACAGCTCTGACAGAGCGACATCTGAGGACCCTGCTGTGGATGGCAACCCTGACAAGTT
GGAACTGAAGCAGGACATCACGAATAATGGCTCTGGCAAGGGGAAATCTGAAGAGCATAC
TGCCACAATTGAGGACCCTAGCAAACTGGAACTGGAGCAGCTTTCTTCCAAAGACCACTC
CGGCAATCCAATCTCCAACCCCTCTTCTGATAACAAGGAGCCTGCTGTAAATCCATCAGC
TGACAAAGCTCTGCAGTCTCCTAGAACTAAACCTGTGGAAAAAGGATTACTGGACTTGGA
CTCCTCTTCTCCCCAGCAGGAGGGAGAAGGTAAGTCTTTAGAGCCAGCTGAAGTTGTGGA
GCCCAAGGAGACTGAAGAAGGGGATACAGAGCCTGAAGAGGATATACCACCCAAAGAAGA
GAAAGAAATGCCTGGCCCTGCCTCCAGTGAGAACCGTGAAGGGGCACTTTCGAAACCCTT
GGATAAGGAGAAGGATGACGTTTATAAGGATAATCTTGGAAATGCCAGTGCAGAGAGCAG
CCACTTCTTTGCATATCTGGTGACGGCAGCCATTCTCGTCGCTGTCCTCTATATTGCCTA
CCACAATAAGCGGAAGATTATTGCTTTCGTCCTGGAAGGAAAAAGATCCAAAGTCACACG
GCGGCCAAAGGCCAGTGATTACCAGCGTTTGGACCAGAAGATTTGAATTTTCTGTTCTTG
AGAACCATGTCCTCCCTGCTGATTTGTTTCTAAGTCAAGAAAAATGAAGAGAAAAATACT
GTGACCTAAGAGAGACCCCCTGCTCTCGGGTTTGGTGGCGAGTCTGGCAGAGGCAGGGGG
GGATTGCTTTGGTTTTTGCACCTGCACTTTGGTGACCTTGTCCTCCTGTGTTCCTGTTAT
TTATGCTGGTGTCTTCCAGCCTGTCCCCCTCTGAGTGTGAGTAGAGGAGCATGTGGGTAC
CCAGCAGTGACCAAAGGAAGACCCCAGCCCTCAGCAGGTGCTCGCTGCTGACTGCCCTCT
GTGGGACCTTGGCCTTGTGGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47193667|emb|CAG14840.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47193667|emb|CAG14840.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               594-1361, - strand, RNAz p=0.981951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-1361, - strand, RNAz p=0.981951

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               523-976, gnl|bosTau2|chr11 (34789470-34789017)
               

               
               523-976, gnl|Hg17|chr2 (85465742-85465289)
               

               
               523-976, gnl|Mm7|chr6 (72633923-72633455)
               


               
               1059-1361, gnl|bosTau2|chr11 (34786164-34785850)
               

               
               1059-1361, gnl|Hg17|chr2 (85461453-85461139)
               

               
               1059-1361, gnl|Mm7|chr6 (72630043-72629742)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               523-976, gnl|bosTau2|chr11 (34789470-34789017)
               

               
               523-976, gnl|Hg17|chr2 (85465742-85465289)
               

               
               523-976, gnl|Mm7|chr6 (72633923-72633455)
               


               
               1059-1361, gnl|bosTau2|chr11 (34786164-34785850)
               

               
               1059-1361, gnl|Hg17|chr2 (85461453-85461139)
               

               
               1059-1361, gnl|Mm7|chr6 (72630043-72629742)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               pgl (0.118483)

	523-976, gnl\|bosTau2\|chr11 (34789470-34789017)
	523-976, gnl\|Hg17\|chr2 (85465742-85465289)
	523-976, gnl\|Mm7\|chr6 (72633923-72633455)

	1059-1361, gnl\|bosTau2\|chr11 (34786164-34785850)
	1059-1361, gnl\|Hg17\|chr2 (85461453-85461139)
	1059-1361, gnl\|Mm7\|chr6 (72630043-72629742)