Non-Coding RNA Search

Ss1.1-Tra1-TCH01B060057.5

Sequence:


               
               TGAAATGAAACCACAAGGCTTAAGAATAGAAATTAAAAGCAAAAATAAAGTTCGGCCTGG
GTCTCTCTTTGATGAAGTAAGAAAGACCGCACGCTTAAACCGGAGGCCCAGAAATCAGGA
GAGTTCAAGTGATGAGCAGACGCCTAGTCGGGATGGTGATAGCCACTCCAGGAGTCCAAG
TAGATCTCGAAGTAAATCTGAAACCAAATCAAGGCACAGAACAAGGTCTGTCTCCTACAG
TCACTCAAGAAGTCGCTCGAGAAGTTCCACATCATCCTCTCGATCAAGAAGCTACTCTAG
AAGTCGGAGCAGAGGGTGGTACAGCAGAGGTCGCACAAGAAGCCGGAGCAGTTCCTACCG
CAGTTACAAAAGTCATAGGTGAGCTGGTGAATCCTGCCCTACTGTGTGGTCTCATCTGTC
TGCTTTTCAAGGCCTGCCCTGCACAGGCAGGGTGGGATAACTTGAAAAGAATCTTGTCAT
TACTGAATAACAGTTAGGCCTACTTTCTCATCTAGTTCTTTCTTTCAAAGAGCTATTGGA
TTCTTACTGGCTATTCTAAGGATGGGATCTTACCAGTGTGAGGAAAGAAAAACAGTAGAG
ATATTTAAGAGGCCCTCACTACTACCTCAACCCGCAATGCATCTTCTTTAACCTAAGTTC
CCATCTGGAGTCATCTCTTGGCTTGAGTTAGAGATTGGGAATGGAGGATTGTTAAAAGGG
GACAAAGGGGAGTTCCCACTGTGGTGTCTCTGCAGTGCCGGGATGTAAGTTGATCCCTGG
CCCAGCATAGTGGATTAAGAATCCACTGTTGCTGCAATTGCAGTGTAGGTTACAACTGCA
GCTCAGATCTGATCCCTGGCCCAGAAATTCTATATGCCATGGTGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAATGAAACCACAAGGCTTAAGAATAGAAATTAAAAGCAAAAATAAAGTTCGGCCTGG
GTCTCTCTTTGATGAAGTAAGAAAGACCGCACGCTTAAACCGGAGGCCCAGAAATCAGGA
GAGTTCAAGTGATGAGCAGACGCCTAGTCGGGATGGTGATAGCCACTCCAGGAGTCCAAG
TAGATCTCGAAGTAAATCTGAAACCAAATCAAGGCACAGAACAAGGTCTGTCTCCTACAG
TCACTCAAGAAGTCGCTCGAGAAGTTCCACATCATCCTCTCGATCAAGAAGCTACTCTAG
AAGTCGGAGCAGAGGGTGGTACAGCAGAGGTCGCACAAGAAGCCGGAGCAGTTCCTACCG
CAGTTACAAAAGTCATAGGTGAGCTGGTGAATCCTGCCCTACTGTGTGGTCTCATCTGTC
TGCTTTTCAAGGCCTGCCCTGCACAGGCAGGGTGGGATAACTTGAAAAGAATCTTGTCAT
TACTGAATAACAGTTAGGCCTACTTTCTCATCTAGTTCTTTCTTTCAAAGAGCTATTGGA
TTCTTACTGGCTATTCTAAGGATGGGATCTTACCAGTGTGAGGAAAGAAAAACAGTAGAG
ATATTTAAGAGGCCCTCACTACTACCTCAACCCGCAATGCATCTTCTTTAACCTAAGTTC
CCATCTGGAGTCATCTCTTGGCTTGAGTTAGAGATTGGGAATGGAGGATTGTTAAAAGGG
GACAAAGGGGAGTTCCCACTGTGGTGTCTCTGCAGTGCCGGGATGTAAGTTGATCCCTGG
CCCAGCATAGTGGATTAAGAATCCACTGTTGCTGCAATTGCAGTGTAGGTTACAACTGCA
GCTCAGATCTGATCCCTGGCCCAGAAATTCTATATGCCATGGTGCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.574397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.574397

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001012651, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001012651, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-282, gnl|bosTau2|chr22 (7409655-7409374)
               

               
               1-282, gnl|Hg17|chr3 (42655965-42656246)
               

               
               1-282, gnl|Mm7|chr9 (121452708-121452989)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr22 (7409655-7409374)
               

               
               1-282, gnl|Hg17|chr3 (42655965-42656246)
               

               
               1-282, gnl|Mm7|chr9 (121452708-121452989)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               ste (0.135208)

	1-282, gnl\|bosTau2\|chr22 (7409655-7409374)
	1-282, gnl\|Hg17\|chr3 (42655965-42656246)
	1-282, gnl\|Mm7\|chr9 (121452708-121452989)

	ill (0.175593)
	sin (0.174948)
	fhi (0.169578)
	cje (0.165235)
	tbr (0.154178)
	ste (0.135208)