Non-Coding RNA Search

Ss1.1-Tra1-TCH01B070013.5

Sequence:


               
               GGCTGCTAGAGACTGACCTGAGCTGAGCGTTTGCGGGCCGCTGGGCGGGTTGTTGCGCTC
AGATTCCAAATGAAAATGTTTGAGAGCGTTGACTCCACAACCACAAGATCTGGCCCTGAT
CTTTGGGCTGAAATCTGTTCCTGTCTGCCACATCCTGACCAAGAGGATGGTGCCAGCAAT
GCCTTCTCAGACTCCTTTATGGATTCTTACCCTGTAGGCACAGGCCAGAGGGAAGCCCCA
CACTTTCCTGAGCAGCCAGCTATAAAGCCTTGGGCTCCCTTGCAGGATTCAGAAGTGTAT
TTAGCGTCTCTAGAAAAGAAACTGAGAAAAATCAAAGGTTTAAATCAGGAAGTGACTTCC
AAGGACATGCTTCGAACCCTGGCCCAAGCAAAGAAAGAATGCTGGGATCGGTTCCTCCAG
GAGAAGTTAGCATCGGAGTTTTTCGTGGGTGGACTTGATTCTGATGAGAGCACCTTGGAA
CATTTCAAGAGGTGGCTCCAGCCAGATAAAGTAGCCATCAGTACGGAGGAGGTCCAGTAT
CTGATTCCTCCAGAGTCACAGGTGGAGAAGCCATCGGCCGGGGAGGAGCCAGCAGCGGCG
GAACAGTAAATTACACACGCACACGCCAAGCAGCTGTCTTGGGTCCGGAGGGAACAGCAG
AGAGCTTGGCGTCAGCAGCAGCAAGGAGAAATCTAGGGAGGGAAAAAGCCCAAGCCTTCC
ACTCTGCCAAGCAAGCAGCTGTGGGCCCCTGAGGACGTGCAGGGGTTGGCACATGTGACT
GGTTTGAGCAAAGTGACTGACCCAGTGAGTGCTGGATCAAAATACCACCTCCCTCTCTGT
CTCACAGCTTGCCTGAGCTCTGTTGCTGCAGGAGAGAAGTCTGCTAAGAATCTAGTGAAG
GACCAAGTATGAAAGTATTTGGAGAAATTGATGCCCTTGTGTATAATGTATAAGTTAAAT
GAGCCATTTTTTTTTCTTGCCTCTGGATATTCCTGCCTGCGTCCCAAGCATTCCCTTGGT
AAATTGTCAGGGGTGCCTTGGGCCAAAGAAAGTGAAGTCTGCCTCCTTGAATCCAGGCCC
CACTGGGGCTTCTTTAACAAGTCCATAATAAATACAAGGACTTTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCTAGAGACTGACCTGAGCTGAGCGTTTGCGGGCCGCTGGGCGGGTTGTTGCGCTC
AGATTCCAAATGAAAATGTTTGAGAGCGTTGACTCCACAACCACAAGATCTGGCCCTGAT
CTTTGGGCTGAAATCTGTTCCTGTCTGCCACATCCTGACCAAGAGGATGGTGCCAGCAAT
GCCTTCTCAGACTCCTTTATGGATTCTTACCCTGTAGGCACAGGCCAGAGGGAAGCCCCA
CACTTTCCTGAGCAGCCAGCTATAAAGCCTTGGGCTCCCTTGCAGGATTCAGAAGTGTAT
TTAGCGTCTCTAGAAAAGAAACTGAGAAAAATCAAAGGTTTAAATCAGGAAGTGACTTCC
AAGGACATGCTTCGAACCCTGGCCCAAGCAAAGAAAGAATGCTGGGATCGGTTCCTCCAG
GAGAAGTTAGCATCGGAGTTTTTCGTGGGTGGACTTGATTCTGATGAGAGCACCTTGGAA
CATTTCAAGAGGTGGCTCCAGCCAGATAAAGTAGCCATCAGTACGGAGGAGGTCCAGTAT
CTGATTCCTCCAGAGTCACAGGTGGAGAAGCCATCGGCCGGGGAGGAGCCAGCAGCGGCG
GAACAGTAAATTACACACGCACACGCCAAGCAGCTGTCTTGGGTCCGGAGGGAACAGCAG
AGAGCTTGGCGTCAGCAGCAGCAAGGAGAAATCTAGGGAGGGAAAAAGCCCAAGCCTTCC
ACTCTGCCAAGCAAGCAGCTGTGGGCCCCTGAGGACGTGCAGGGGTTGGCACATGTGACT
GGTTTGAGCAAAGTGACTGACCCAGTGAGTGCTGGATCAAAATACCACCTCCCTCTCTGT
CTCACAGCTTGCCTGAGCTCTGTTGCTGCAGGAGAGAAGTCTGCTAAGAATCTAGTGAAG
GACCAAGTATGAAAGTATTTGGAGAAATTGATGCCCTTGTGTATAATGTATAAGTTAAAT
GAGCCATTTTTTTTTCTTGCCTCTGGATATTCCTGCCTGCGTCCCAAGCATTCCCTTGGT
AAATTGTCAGGGGTGCCTTGGGCCAAAGAAAGTGAAGTCTGCCTCCTTGAATCCAGGCCC
CACTGGGGCTTCTTTAACAAGTCCATAATAAATACAAGGACTTTAGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|21758899|dbj|BAC05411.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|21758899|dbj|BAC05411.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               89-833, - strand, RNAz p=0.850822

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-833, - strand, RNAz p=0.850822

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               49-318, gnl|bosTau2|chr10 (27160826-27160557)
               

               
               49-318, gnl|Hg17|chr15 (38642527-38642258)
               

               
               49-318, gnl|Mm7|chr2 (118768245-118767982)
               


               
               469-1127, gnl|bosTau2|chr10 (27154676-27154011)
               

               
               469-1127, gnl|Hg17|chr15 (38633620-38632908)
               

               
               469-1127, gnl|Mm7|chr2 (118760015-118759337)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-318, gnl|bosTau2|chr10 (27160826-27160557)
               

               
               49-318, gnl|Hg17|chr15 (38642527-38642258)
               

               
               49-318, gnl|Mm7|chr2 (118768245-118767982)
               


               
               469-1127, gnl|bosTau2|chr10 (27154676-27154011)
               

               
               469-1127, gnl|Hg17|chr15 (38633620-38632908)
               

               
               469-1127, gnl|Mm7|chr2 (118760015-118759337)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               che (0.136314)
               

               
               cbr (0.127975)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               che (0.136314)
               

               
               cbr (0.127975)
               

               
               eje (0.0988338)

	49-318, gnl\|bosTau2\|chr10 (27160826-27160557)
	49-318, gnl\|Hg17\|chr15 (38642527-38642258)
	49-318, gnl\|Mm7\|chr2 (118768245-118767982)

	469-1127, gnl\|bosTau2\|chr10 (27154676-27154011)
	469-1127, gnl\|Hg17\|chr15 (38633620-38632908)
	469-1127, gnl\|Mm7\|chr2 (118760015-118759337)

	col (0.195008)
	fty (0.17584)
	nco (0.161734)
	bfe (0.149858)
	che (0.136314)
	cbr (0.127975)
	eje (0.0988338)