Ss1.1-Tra1-TCH01B070040.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGAGGTCACTTCCTGGAATCCTCGTGACTGCTTCAAAGTGCTGGCGGTGGGTGGAGTC CAGTTTCTGATCCTGAACAAGTGCCTCCCAGTCCTTTCTCGAGACTGCACGGACAGGTTG TTCTTCCTTCCTAGAATCTCCAAGGTCTGCGTCGGGGGGAAAGATGCCAGCCCTCGCTGC TCTGTTTAAGTACATTGATGAGAATCAGGATCGCTACATTAAGAAACTTGCAGAATGGGT GGCCATCCAGAGCGTGTCTGCCTGGCCTGAGAAGAGGGGTGAGATCCGGAAGATGATGGA GGTTGCCGCTGCCGACATCACACAGCTGGGGGGCTCCGTGGAGCTGGTGGACATCGGGAA CCAGAAGCTCCCTGATGGCTCGGAGATACCGCTTCCTCCCATTTTACTTGGCAAGCTGGG CTCTGACCCGCAGAAGAAGACGGTGTGCGTTTATGGGCATCTGGATGTGCAGCCGGCAGC CCTGGAGGATGGCTGGGATAGTGAGCCCTTCACCTTGGTGGAGCGAGACGGCAAACTGTA CGGAAGAGGAGCAACGGATGACAAAGGGCCCGTGGCCGGCTGGGTGAATGCCCTGGAGGC CTTCCAGAAAACAAATCAGGAGGTTCCCGTCAACATCCGCTTCTGTCTGGAAGGCATGGA GGAGTCTGGCTCTGAAGGCCTGGACGCACTCATCTTTGCCCAGAAGGACCAGTTCTTTAA GGATGTGGACTTCGTCTGCATCTCCGACAATTACTGGCTGGGGAAGAACAAGCCCTGCGT CACCTATGGGCTCCGCGGCATCTGCTATTTTTTCATCGAGGTGGAATGCAGCAACAGAGA CCTGCACTCCGGCGTGTATGGTGGCTCTGTGCATGAGGCCATGACCGATCTCATCACGCT GATGGGCTCCCTGATGGACAGGAAGGGGAAGATCCTCATCCCCGGCATCAACGAGGCCGT GGCCCCCTTGACGGAGGAGGAGCTAGCGCTCTATGACCAGATTGACTTCGACCTGGCAGA GTACTCCAAGGACGTGGGGGCAGAGACCCTGCTGCATGACTGCAAGAAAGACATCCTGAT GCACAGGTGGCGATACCCGTCCCTCTCGCTGCATGGGATCGAAGGTGCCTTCTCTGGGTC GGGGGCCAAGACCGTGATTCCTCGAAAAGTGATCGGCAAGTTCTCCATCAGGCTCGTGCC AGACATGACTCCTGAAGTGGTCAGCGAGCAGGTGATAAGCTACTTGACCAAGAAGTTTGC TGAACTGCACAGCCCCAACAAGTTCAAGGTGTACATGGGCCACGGGGGGAAGCCCTGGGT GTCTGACTTCAACCACCCTCATTACATGGCTGGGAGAAGAGCCCTACAGACAGTTTTTGG CGTCGAGCCGGACCTGACCAGGGAAGGTGGCAGCATTCCTGTGACTCTGACGTTTCAGGA GGCCACGGGCAAGAATGTCATGCTGTTGCCCATGGGCTCAGCTGATGACGGAGCCCACTC CCAGAATGAGAAGCTCAACAGGCACAACTACATTGAAGGAACCAAGATGATGGCTGCATA CCTGTACGAAGTGTCTCAGCTGAAGAACTGAGCCCCACCTCTGCCCTCCACCTCACACTC TTCTGGCTGTTCAGGAAAGCGGAAGCCCGTCTCTCCTCTTTGCGTCTCATCAGATGCCAC AGACTGCAGAAGTGGACGTGAGGGCACCTACCTGGCTCAGGATGGAGTTACCTATATGGG GCCGTGGTCCATGTTCAGTCCTGGGGGCTTGTAAATGACCCTGGGTGGTGGCTGAATGCT CACTGGTGGTCAGTGTGACTTGGTCTCCAGAAAAGAGCTGAGGCCCGAAAGCACAGGTTC TTCTGTAGAAGGTTCTGCCTGACGTCCATTTGGGCTAAAGAGCAGACTTGGTGCTTCCCA GGCCCAGCTCTGCCCCCGAGTCAGGGTCGTGCATGCTGGACACTTAGGGGCTCCCGATTC CTTGAGGGCCACCCTCTCTGATCCCTGCTGTCTTGTGCACGTTCTGTTGTTTTCTTTAAC CGTTACTGGTATTTCATATCTTTTCTTTATTATGATTCCCTAAACCTAAACCTAACTAGG AGGGTTATTTGGTCTCCATCTCTGTTGCTAAATAAAAAGTAGGCTCTGGAGGAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGAGGTCACTTCCTGGAATCCTCGTGACTGCTTCAAAGTGCTGGCGGTGGGTGGAGTC CAGTTTCTGATCCTGAACAAGTGCCTCCCAGTCCTTTCTCGAGACTGCACGGACAGGTTG TTCTTCCTTCCTAGAATCTCCAAGGTCTGCGTCGGGGGGAAAGATGCCAGCCCTCGCTGC TCTGTTTAAGTACATTGATGAGAATCAGGATCGCTACATTAAGAAACTTGCAGAATGGGT GGCCATCCAGAGCGTGTCTGCCTGGCCTGAGAAGAGGGGTGAGATCCGGAAGATGATGGA GGTTGCCGCTGCCGACATCACACAGCTGGGGGGCTCCGTGGAGCTGGTGGACATCGGGAA CCAGAAGCTCCCTGATGGCTCGGAGATACCGCTTCCTCCCATTTTACTTGGCAAGCTGGG CTCTGACCCGCAGAAGAAGACGGTGTGCGTTTATGGGCATCTGGATGTGCAGCCGGCAGC CCTGGAGGATGGCTGGGATAGTGAGCCCTTCACCTTGGTGGAGCGAGACGGCAAACTGTA CGGAAGAGGAGCAACGGATGACAAAGGGCCCGTGGCCGGCTGGGTGAATGCCCTGGAGGC CTTCCAGAAAACAAATCAGGAGGTTCCCGTCAACATCCGCTTCTGTCTGGAAGGCATGGA GGAGTCTGGCTCTGAAGGCCTGGACGCACTCATCTTTGCCCAGAAGGACCAGTTCTTTAA GGATGTGGACTTCGTCTGCATCTCCGACAATTACTGGCTGGGGAAGAACAAGCCCTGCGT CACCTATGGGCTCCGCGGCATCTGCTATTTTTTCATCGAGGTGGAATGCAGCAACAGAGA CCTGCACTCCGGCGTGTATGGTGGCTCTGTGCATGAGGCCATGACCGATCTCATCACGCT GATGGGCTCCCTGATGGACAGGAAGGGGAAGATCCTCATCCCCGGCATCAACGAGGCCGT GGCCCCCTTGACGGAGGAGGAGCTAGCGCTCTATGACCAGATTGACTTCGACCTGGCAGA GTACTCCAAGGACGTGGGGGCAGAGACCCTGCTGCATGACTGCAAGAAAGACATCCTGAT GCACAGGTGGCGATACCCGTCCCTCTCGCTGCATGGGATCGAAGGTGCCTTCTCTGGGTC GGGGGCCAAGACCGTGATTCCTCGAAAAGTGATCGGCAAGTTCTCCATCAGGCTCGTGCC AGACATGACTCCTGAAGTGGTCAGCGAGCAGGTGATAAGCTACTTGACCAAGAAGTTTGC TGAACTGCACAGCCCCAACAAGTTCAAGGTGTACATGGGCCACGGGGGGAAGCCCTGGGT GTCTGACTTCAACCACCCTCATTACATGGCTGGGAGAAGAGCCCTACAGACAGTTTTTGG CGTCGAGCCGGACCTGACCAGGGAAGGTGGCAGCATTCCTGTGACTCTGACGTTTCAGGA GGCCACGGGCAAGAATGTCATGCTGTTGCCCATGGGCTCAGCTGATGACGGAGCCCACTC CCAGAATGAGAAGCTCAACAGGCACAACTACATTGAAGGAACCAAGATGATGGCTGCATA CCTGTACGAAGTGTCTCAGCTGAAGAACTGAGCCCCACCTCTGCCCTCCACCTCACACTC TTCTGGCTGTTCAGGAAAGCGGAAGCCCGTCTCTCCTCTTTGCGTCTCATCAGATGCCAC AGACTGCAGAAGTGGACGTGAGGGCACCTACCTGGCTCAGGATGGAGTTACCTATATGGG GCCGTGGTCCATGTTCAGTCCTGGGGGCTTGTAAATGACCCTGGGTGGTGGCTGAATGCT CACTGGTGGTCAGTGTGACTTGGTCTCCAGAAAAGAGCTGAGGCCCGAAAGCACAGGTTC TTCTGTAGAAGGTTCTGCCTGACGTCCATTTGGGCTAAAGAGCAGACTTGGTGCTTCCCA GGCCCAGCTCTGCCCCCGAGTCAGGGTCGTGCATGCTGGACACTTAGGGGCTCCCGATTC CTTGAGGGCCACCCTCTCTGATCCCTGCTGTCTTGTGCACGTTCTGTTGTTTTCTTTAAC CGTTACTGGTATTTCATATCTTTTCTTTATTATGATTCCCTAAACCTAAACCTAACTAGG AGGGTTATTTGGTCTCCATCTCTGTTGCTAAATAAAAAGTAGGCTCTGGAGGAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1717-1836, + strand, RNAz p=0.561857 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1717-1836, + strand, RNAz p=0.561857 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 93-223, gnl|bosTau2|chr24 (4061151-4061282) | |
| 93-223, gnl|Hg17|chr18 (70318111-70318248) | |
| 93-223, gnl|Mm7|chr18 (85031102-85030971) | |
| 366-551, gnl|bosTau2|chr24 (4064671-4064856) | |
| 366-551, gnl|canFam2|chr1 (7926047-7925877) | |
| 366-551, gnl|danRer3|chr19 (23814655-23814843) | |
| 366-551, gnl|dasNov1|scaffold_40664 (10190-9998) | |
| 366-551, gnl|echTel1|scaffold_200709 (1649-1836) | |
| 366-551, gnl|fr1|chrUn (209549576-209549406) | |
| 366-551, gnl|galGal2|chr2 (91741976-91741803) | |
| 366-551, gnl|hg17|chr18 (70324062-70324254) | |
| 366-551, gnl|Hg17|chr18 (70324062-70324260) | |
| 366-551, gnl|loxAfr1|scaffold_2035 (81585-81415) | |
| 366-551, gnl|mm7|chr18 (85028007-85027820) | |
| 366-551, gnl|Mm7|chr18 (85028005-85027792) | |
| 366-551, gnl|monDom2|scaffold_3 (126709052-126708882) | |
| 366-551, gnl|oryCun1|scaffold_206622 (54100-54284) | |
| 366-551, gnl|panTro1|chr17 (67497395-67497587) | |
| 366-551, gnl|rheMac2|chr18 (67988419-67988602) | |
| 366-551, gnl|rn3|chr18 (81300162-81299975) | |
| 366-551, gnl|tetNig1|chr21_random (1938413-1938587) | |
| 617-823, gnl|bosTau2|chr24 (4067056-4067262) | |
| 617-823, gnl|Hg17|chr18 (70329025-70329231) | |
| 617-823, gnl|Mm7|chr18 (85024313-85024107) | |
| 1060-1232, gnl|bosTau2|chr24 (4069123-4069294) | |
| 1060-1232, gnl|Hg17|chr18 (70334437-70334608) | |
| 1060-1232, gnl|Mm7|chr18 (85019100-85018929) | |
| 1519-2128, gnl|bosTau2|chr24 (4071380-4071965) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 93-223, gnl|bosTau2|chr24 (4061151-4061282) | |
| 93-223, gnl|Hg17|chr18 (70318111-70318248) | |
| 93-223, gnl|Mm7|chr18 (85031102-85030971) | |
| 366-551, gnl|bosTau2|chr24 (4064671-4064856) | |
| 366-551, gnl|canFam2|chr1 (7926047-7925877) | |
| 366-551, gnl|danRer3|chr19 (23814655-23814843) | |
| 366-551, gnl|dasNov1|scaffold_40664 (10190-9998) | |
| 366-551, gnl|echTel1|scaffold_200709 (1649-1836) | |
| 366-551, gnl|fr1|chrUn (209549576-209549406) | |
| 366-551, gnl|galGal2|chr2 (91741976-91741803) | |
| 366-551, gnl|hg17|chr18 (70324062-70324254) | |
| 366-551, gnl|Hg17|chr18 (70324062-70324260) | |
| 366-551, gnl|loxAfr1|scaffold_2035 (81585-81415) | |
| 366-551, gnl|mm7|chr18 (85028007-85027820) | |
| 366-551, gnl|Mm7|chr18 (85028005-85027792) | |
| 366-551, gnl|monDom2|scaffold_3 (126709052-126708882) | |
| 366-551, gnl|oryCun1|scaffold_206622 (54100-54284) | |
| 366-551, gnl|panTro1|chr17 (67497395-67497587) | |
| 366-551, gnl|rheMac2|chr18 (67988419-67988602) | |
| 366-551, gnl|rn3|chr18 (81300162-81299975) | |
| 366-551, gnl|tetNig1|chr21_random (1938413-1938587) | |
| 617-823, gnl|bosTau2|chr24 (4067056-4067262) | |
| 617-823, gnl|Hg17|chr18 (70329025-70329231) | |
| 617-823, gnl|Mm7|chr18 (85024313-85024107) | |
| 1060-1232, gnl|bosTau2|chr24 (4069123-4069294) | |
| 1060-1232, gnl|Hg17|chr18 (70334437-70334608) | |
| 1060-1232, gnl|Mm7|chr18 (85019100-85018929) | |
| 1519-2128, gnl|bosTau2|chr24 (4071380-4071965) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| jej (0.989218) | |
| nje (0.8296) | |
| clu (0.717875) | |
| cty (0.5204) | |
| cje (0.495704) | |
| ece (0.45861) | |
| cag (0.453583) | |
| fli (0.405762) | |
| duo (0.345602) | |
| pty (0.285429) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| eep (0.245128) | |
| cly (0.241284) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.989218) | |
| nje (0.8296) | |
| clu (0.717875) | |
| cty (0.5204) | |
| cje (0.495704) | |
| ece (0.45861) | |
| cag (0.453583) | |
| fli (0.405762) | |
| duo (0.345602) | |
| pty (0.285429) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ute (0.265569) | |
| eep (0.245128) | |
| cly (0.241284) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) |