Ss1.1-Tra1-TCH01B070042.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCCGCCCTGAGGACCACTCTGACTCGGGCAGCGCCCAGGTGGGCTCCAGGGGGCCTG CAGACGGTGGACGGCGATGCTGAAGGCCAAGATCCTCTTCGTGGGGCCCTGCGAGAGCGG GAAAACCGTATTGGCCAACTTTCTGACAGAATCTTCTGACATTACCGAATACCACCCAAC CCAAGGAGTGAGGATCCTGGAATTTGAGAACCCTCACGTTACCAGCAACAACAAAGGCAC CGGCTGTGAATTTGAGCTCTGGGATTGTGGCGGCGACCCAAAGTTCGAGTCTTGCTGGCC AGCTCTGATGAAGGACTCTCACGGGGTGGTGATCGTCTTCAACGCTGACATCCCAAGCCA CCTGACGGAAATTGAGATGTGGTATTCCTGCTTTGTCCAGCAGCAGTTTTTACAGGATAC TCAGTGTCTGTTAATTGCACACCATAAGCCAGGCTCCGGAAGTGATAAAGGAAACCCCAC TTTGTCGCCACCCTTGAACAAGCTAAAGCTGGTGCACTCGAACCTTGAGGATGACCCCGA AGAGATGAGGATGGAATTCATAAAGTATTTAAGAAGCATCATCAACTCAGTGTCTGAGAG CAGAGACCGGGAGGAGATGTCAATTATCACCTAACCGCTCCTCATCCCACAGGAAGTCAG TTCCGCGAAGATCTAAAATCCATCCCGACACTCAGCTTCTCCCCTCCCTCCCTGTGGCTT CAGAAGTCATTTTCCCGCTTTGCCCAAAGGTACCAGTTGACTCTACCATCTATTCTCTGT CCTTAGTTGAGCTGAGAAAATCCCATTCTTAAATTCTGATTCCTTTGCCCCAGACATCTC CAAAGAGCTGGAAAACTGAGGATTTCTAATTTTTTTTTCACTTCATATATGTCACATTAT AAAAGTTGTAGAATTGTTAACTGTCATAGCCCAATGATACCACACTGGTTTAAATCCTTA AAATTCACCTAGGATATTTTCGAAAAACATTAGCATTTAACCTCTCTAAGATTTTAGTTT TATTTAGATGTCCTTGACATCTGGATACCATAGCATATTAGAAGGTGAAAGACATATGTG GGGTTTTTTTAGGTTTTTTTTGTTGTTGTTGTTATTTCAGAATTTGATTCTTAAATATTA CTTCATGTAATACAGGAAAAAACAATGTTATGTTGTCATGACACCTAATTTGTAAAAATG GTCAAAAGATTTGCTGCTTCAATAACCCAAAAGGGTGAGTTTATAGCTTTTTGTACAGGT GAGTTTGTTTTAGTAATCTGAGGATTTGTTTTTCTTTCATAATTTTTATTTTTTTTATTT TCTAATATAGCCAACCTGAACATACATGAAGTAGATTGAAAGCTCGATGTAGGTCTTTTC CACTGAGAGTGGAAGAAAAGAGGAATAAATATGCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCCGCCCTGAGGACCACTCTGACTCGGGCAGCGCCCAGGTGGGCTCCAGGGGGCCTG CAGACGGTGGACGGCGATGCTGAAGGCCAAGATCCTCTTCGTGGGGCCCTGCGAGAGCGG GAAAACCGTATTGGCCAACTTTCTGACAGAATCTTCTGACATTACCGAATACCACCCAAC CCAAGGAGTGAGGATCCTGGAATTTGAGAACCCTCACGTTACCAGCAACAACAAAGGCAC CGGCTGTGAATTTGAGCTCTGGGATTGTGGCGGCGACCCAAAGTTCGAGTCTTGCTGGCC AGCTCTGATGAAGGACTCTCACGGGGTGGTGATCGTCTTCAACGCTGACATCCCAAGCCA CCTGACGGAAATTGAGATGTGGTATTCCTGCTTTGTCCAGCAGCAGTTTTTACAGGATAC TCAGTGTCTGTTAATTGCACACCATAAGCCAGGCTCCGGAAGTGATAAAGGAAACCCCAC TTTGTCGCCACCCTTGAACAAGCTAAAGCTGGTGCACTCGAACCTTGAGGATGACCCCGA AGAGATGAGGATGGAATTCATAAAGTATTTAAGAAGCATCATCAACTCAGTGTCTGAGAG CAGAGACCGGGAGGAGATGTCAATTATCACCTAACCGCTCCTCATCCCACAGGAAGTCAG TTCCGCGAAGATCTAAAATCCATCCCGACACTCAGCTTCTCCCCTCCCTCCCTGTGGCTT CAGAAGTCATTTTCCCGCTTTGCCCAAAGGTACCAGTTGACTCTACCATCTATTCTCTGT CCTTAGTTGAGCTGAGAAAATCCCATTCTTAAATTCTGATTCCTTTGCCCCAGACATCTC CAAAGAGCTGGAAAACTGAGGATTTCTAATTTTTTTTTCACTTCATATATGTCACATTAT AAAAGTTGTAGAATTGTTAACTGTCATAGCCCAATGATACCACACTGGTTTAAATCCTTA AAATTCACCTAGGATATTTTCGAAAAACATTAGCATTTAACCTCTCTAAGATTTTAGTTT TATTTAGATGTCCTTGACATCTGGATACCATAGCATATTAGAAGGTGAAAGACATATGTG GGGTTTTTTTAGGTTTTTTTTGTTGTTGTTGTTATTTCAGAATTTGATTCTTAAATATTA CTTCATGTAATACAGGAAAAAACAATGTTATGTTGTCATGACACCTAATTTGTAAAAATG GTCAAAAGATTTGCTGCTTCAATAACCCAAAAGGGTGAGTTTATAGCTTTTTGTACAGGT GAGTTTGTTTTAGTAATCTGAGGATTTGTTTTTCTTTCATAATTTTTATTTTTTTTATTT TCTAATATAGCCAACCTGAACATACATGAAGTAGATTGAAAGCTCGATGTAGGTCTTTTC CACTGAGAGTGGAAGAAAAGAGGAATAAATATGCTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 283-484, gnl|bosTau2|chr25 (30551596-30551395) | |
| 283-484, gnl|canFam2|chr6 (11588108-11587870) | |
| 283-484, gnl|danRer3|chr5 (24856563-24856306) | |
| 283-484, gnl|dasNov1|scaffold_50081 (11368-11130) | |
| 283-484, gnl|echTel1|scaffold_278195 (14986-15180) | |
| 283-484, gnl|fr1|chrUn (235388556-235388787) | |
| 283-484, gnl|galGal2|chr19 (3257149-3257387) | |
| 283-484, gnl|hg17|chr7 (100553052-100553290) | |
| 283-484, gnl|Hg17|chr7 (100553258-100553057) | |
| 283-484, gnl|loxAfr1|scaffold_8927 (47422-47660) | |
| 283-484, gnl|mm7|chr5 (135882807-135882572) | |
| 283-484, gnl|Mm7|chr5 (135882599-135882800) | |
| 283-484, gnl|monDom2|scaffold_77 (1637182-1636947) | |
| 283-484, gnl|oryCun1|scaffold_84752 (7160-6927) | |
| 283-484, gnl|panTro1|chr6 (102323319-102323557) | |
| 283-484, gnl|rheMac2|chr3 (48613100-48613338) | |
| 283-484, gnl|rn3|chr12 (20755596-20755361) | |
| 283-484, gnl|tetNig1|chr15_random (1564536-1564322) | |
| 283-484, gnl|xenTro1|scaffold_456 (726846-726614) | |
| 488-956, gnl|bosTau2|chr25 (30550577-30550075) | |
| 488-956, gnl|Hg17|chr7 (100551996-100551509) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 283-484, gnl|bosTau2|chr25 (30551596-30551395) | |
| 283-484, gnl|canFam2|chr6 (11588108-11587870) | |
| 283-484, gnl|danRer3|chr5 (24856563-24856306) | |
| 283-484, gnl|dasNov1|scaffold_50081 (11368-11130) | |
| 283-484, gnl|echTel1|scaffold_278195 (14986-15180) | |
| 283-484, gnl|fr1|chrUn (235388556-235388787) | |
| 283-484, gnl|galGal2|chr19 (3257149-3257387) | |
| 283-484, gnl|hg17|chr7 (100553052-100553290) | |
| 283-484, gnl|Hg17|chr7 (100553258-100553057) | |
| 283-484, gnl|loxAfr1|scaffold_8927 (47422-47660) | |
| 283-484, gnl|mm7|chr5 (135882807-135882572) | |
| 283-484, gnl|Mm7|chr5 (135882599-135882800) | |
| 283-484, gnl|monDom2|scaffold_77 (1637182-1636947) | |
| 283-484, gnl|oryCun1|scaffold_84752 (7160-6927) | |
| 283-484, gnl|panTro1|chr6 (102323319-102323557) | |
| 283-484, gnl|rheMac2|chr3 (48613100-48613338) | |
| 283-484, gnl|rn3|chr12 (20755596-20755361) | |
| 283-484, gnl|tetNig1|chr15_random (1564536-1564322) | |
| 283-484, gnl|xenTro1|scaffold_456 (726846-726614) | |
| 488-956, gnl|bosTau2|chr25 (30550577-30550075) | |
| 488-956, gnl|Hg17|chr7 (100551996-100551509) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cut (0.339847) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| kid (0.129735) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| ece (0.229305) | |
| mcp (0.170648) | |
| kid (0.129735) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| cty (0.10408) |