Non-Coding RNA Search

Ss1.1-Tra1-TCH01B080027.5

Sequence:


               
               ATCTCCAAATGCAACAAGGTCTTCAGTTTGTCTGTTAAAGCTGCACTGTCATTTGATAGC
TGAGTTTTATCATAAGAGGGAACCTGTCCTTTCGAGAGAGAATCAGTGGGCTGGAATAGT
CAGGGCCTCTGCATCATTGGTGACTGGTGAGAGAAGGTTCTAGAATAATGGAGGAGAGCA
CAGTGCCAGAAGTCAGTTGGCCCTAAGCCCCAGGTGCCCTGGGCAGACCCCAGAAGACTT
TCCTCAGCACGGGGAAGATTTAACTTTTCATCCCAGGTCGGGTCTCCCACAGGTGAACAT
TGTAGGTGTTCTAATAGCCCACCTCATGCCCACCAACCTCCAGACGGTCATTCACCCTCA
TCGTGTCTCCAAAGTCCCTGTGCCACCTCCTCTCACATCTTCTAGAGCTTCCTACAAGTC
ACCGTGCGCACATTCAACAAAACATATCAAAGGATGTTTTCCTCTCTTATTTTGTAAATA
ATATTAGCTATTAAGCTGGCTGCATCCCTTCAGATTCAGCCATTCATAAGCAGGTGGGAG
GTGGTTTCTTAGCAGGACTCTGTGAATGAAGGCCGGACATTTTCAGGCCCTTCCTTGATT
ATGTCTCACGGGTTGATACGTGGGTTGATATTGATTCTTGCTGAGAAGACAAAATACCAC
CACATCAGCTATCTCTCTGACTTTCTCTCTGCTATCTTATCTTCCAAGGAGGGCCTGTCT
TCATACTCGTGTTTGGACACAGTTCAGATCTTACTTATCATGGCTGTAAAAGGAGACAGT
GAAATGCTGTAAAAGTAGGCCATAAAGGGGATGCTGGCAGAAAACCATATTGCTTTTCTT
TTTGGTGGTACAGTGGTGGGCCTGATGAAATGGGGGCAGGGGGCAAGCAGAGGGTCACAG
TTGGCTGTCTCAGCCCAGAAGAAGGATATTGCAGCCCTGACAGCCTCCGCAGCCCCGCAG
CCAGAGCCCTGGTGCTTGGGACCTGTTTGCCTATGTTTTGCTGCCTTGGGAACGGCACTC
ATTATCGTGTCATTGGCACAGATGACGTGGTGCGCTTTGACCGTTAAGCAATGTGTTATT
GCTGTAGCCAAGATTAGGGCAAGCAGGGAAACCTTCCCAGCAAGGTATTTGTTTCCGTTT
TCTATGCTTCTGTCAGAAACCTGCTAGGACCTTTAGTAGCCAATAAAAAAGAAGTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCCAAATGCAACAAGGTCTTCAGTTTGTCTGTTAAAGCTGCACTGTCATTTGATAGC
TGAGTTTTATCATAAGAGGGAACCTGTCCTTTCGAGAGAGAATCAGTGGGCTGGAATAGT
CAGGGCCTCTGCATCATTGGTGACTGGTGAGAGAAGGTTCTAGAATAATGGAGGAGAGCA
CAGTGCCAGAAGTCAGTTGGCCCTAAGCCCCAGGTGCCCTGGGCAGACCCCAGAAGACTT
TCCTCAGCACGGGGAAGATTTAACTTTTCATCCCAGGTCGGGTCTCCCACAGGTGAACAT
TGTAGGTGTTCTAATAGCCCACCTCATGCCCACCAACCTCCAGACGGTCATTCACCCTCA
TCGTGTCTCCAAAGTCCCTGTGCCACCTCCTCTCACATCTTCTAGAGCTTCCTACAAGTC
ACCGTGCGCACATTCAACAAAACATATCAAAGGATGTTTTCCTCTCTTATTTTGTAAATA
ATATTAGCTATTAAGCTGGCTGCATCCCTTCAGATTCAGCCATTCATAAGCAGGTGGGAG
GTGGTTTCTTAGCAGGACTCTGTGAATGAAGGCCGGACATTTTCAGGCCCTTCCTTGATT
ATGTCTCACGGGTTGATACGTGGGTTGATATTGATTCTTGCTGAGAAGACAAAATACCAC
CACATCAGCTATCTCTCTGACTTTCTCTCTGCTATCTTATCTTCCAAGGAGGGCCTGTCT
TCATACTCGTGTTTGGACACAGTTCAGATCTTACTTATCATGGCTGTAAAAGGAGACAGT
GAAATGCTGTAAAAGTAGGCCATAAAGGGGATGCTGGCAGAAAACCATATTGCTTTTCTT
TTTGGTGGTACAGTGGTGGGCCTGATGAAATGGGGGCAGGGGGCAAGCAGAGGGTCACAG
TTGGCTGTCTCAGCCCAGAAGAAGGATATTGCAGCCCTGACAGCCTCCGCAGCCCCGCAG
CCAGAGCCCTGGTGCTTGGGACCTGTTTGCCTATGTTTTGCTGCCTTGGGAACGGCACTC
ATTATCGTGTCATTGGCACAGATGACGTGGTGCGCTTTGACCGTTAAGCAATGTGTTATT
GCTGTAGCCAAGATTAGGGCAAGCAGGGAAACCTTCCCAGCAAGGTATTTGTTTCCGTTT
TCTATGCTTCTGTCAGAAACCTGCTAGGACCTTTAGTAGCCAATAAAAAAGAAGTTTCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               196-388, - strand, RNAz p=0.959462
               

               
               997-1149, + strand, RNAz p=0.965478

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-388, - strand, RNAz p=0.959462
               

               
               997-1149, + strand, RNAz p=0.965478

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               8-1200, gnl|bosTau2|chr8 (20623678-20624856)
               

               
               8-1200, gnl|Hg17|chr9 (68374317-68375519)
               

               
               8-1200, gnl|Mm7|chr19 (24384293-24383298)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1200, gnl|bosTau2|chr8 (20623678-20624856)
               

               
               8-1200, gnl|Hg17|chr9 (68374317-68375519)
               

               
               8-1200, gnl|Mm7|chr19 (24384293-24383298)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               bla (1.11912)
               

               
               elu (0.385356)
               

               
               clu (0.358938)
               

               
               cga (0.279096)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (1.11912)
               

               
               elu (0.385356)
               

               
               clu (0.358938)
               

               
               cga (0.279096)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               jca (0.11396)

	196-388, - strand, RNAz p=0.959462
	997-1149, + strand, RNAz p=0.965478

	8-1200, gnl\|bosTau2\|chr8 (20623678-20624856)
	8-1200, gnl\|Hg17\|chr9 (68374317-68375519)
	8-1200, gnl\|Mm7\|chr19 (24384293-24383298)

	bla (1.11912)
	elu (0.385356)
	clu (0.358938)
	cga (0.279096)
	gul (0.177588)
	ton (0.1755)
	duo (0.172801)
	cut (0.169924)
	nje (0.16592)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	jca (0.11396)