Ss1.1-Tra1-TCH01B080092.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCTCTCCGCAAGCCCCGGCCCGCCACGCCTTCGGATCGTCTTCTCTCCGCTTCGGATC GAGGGCGCTCCCTGGACTCGCCCTCTGCCCGACGACAGACAGCTGCCGGTTCTCCTGAGT TCTCCCTGCGGCCCGGACACATAGTATGACCATTACGTGTTTCGTCTCCCAGCCATCTTC TATGGAAAACCCAAGGGATGGGGCCATGATAGCCACTGGCAGCTTTGAGGAATGGGAGGC CTTTAGAGAAGCTTGATCTTGAAGGCCTCAGTGTGAGACCTGACGAAGCCAGATTCCGGC AGAGTTCCTCTATCTCGTCTTGCTGCTGAGTGGAGGCGTCTCCTTCTGCGGTTCCTCTGT GTCTCCTGAGAGCTAGCAGGAAATCAGCATTATGGTTGGATTCAAGGCCACAGAGGTCCC CCCGACTGCCACTGTGAAGTTCCTGGGGGCTGGCACAGCTGCCTGCATCGCAGACCTCAT CACCTTTCCCCTGGACACGGCTAAAGTCCGGCTGCAGATCCAGGGAGAAAGGCGGGGGCC AGTGCAGGCCGCGGCCAGCGCCCAGTACCGCGGGGTGCTGGGCACCATTCTCACCATGGT GCGCAACGAGGGCCCCCGCAGCCTCTACAACGGGCTGGTGGCCGGCCTGCAGCGCCAGAT GAGCTTCGCCTCCGTCCGCATCGGCCTCTACGACTCCGTCAAGCATTTCTACACCAAGGG CTCAGAGCATGCTGGCATCGGGAGCCGCCTCCTGGCAGGCAGCACCACGGGGGCCTTGGC TGTGGCCGTGGCCCAGCCAACAGACGTGGTAAAGGTCCGGTTCCAAGCGCAGGCCCGGGC CGGCGGAGGCCGGCGGTACCGGAGCACTGTCGACGCCTACAAGACCATCGCCCGAGAGGA GGGGCTGCGGGGCCTCTGGAAAGGGACCTCACCCAATGTCGCTCGTAATGCCATTGTCAA CTGTGCTGAGCTGGTGACCTATGACCTCATCAAGGACACGCTCCTGAAGGCCGACCTCAT GACAGATGACCTTCCCTGCCACTTCACGTCCGCCTTCGGGGCGGGCTTCTGCACCACCGT CATCGCCTCTCCCGTGGACGTGGTCAAGACGAGATACATGAACTCTGCCCCGGGCCAGTA CAGCAGCGCTGGCCACTGTGCCCTCACCATGCTCCAGAAGGAGGGTCCCCGAGCCTTCTA CAAAGGGTTCACGCCCTCCTTTCTCCGATTGGGGTCCTGGAACGTGGTGATGTTTGTCAC CTATGAGCAGCTGAAGAGGGCCCTCATGGCTGCCCGCGCTTCCCGGGAGGCTCCCTTTTG AGCCTCTCCTGCTGCCGAGCCGACTGCCTCGGGCTTTGGCTCCTGGCCCCGCTGCCCTCC TCCCTCTATCACCCGCTGCCCCCTTTCCCACCACGTCCCTTCCCGGTCCCCACATTCTCA CCCCTCAGTTCTCCGTTGCCTCTCATGGTTTGTCCCCATGGAGTTGACCCCAACTGACAC TGTGGGAAGCCTGGCATCAGCCAGGATCTCAAGTCCTCCGTCCTTTGAAAAGTTTAGCCC AACTCCTCATCCTGCCCCACCCAGCCCAGTTAGCACATCACCCATAAAACCAGCTCAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCTCTCCGCAAGCCCCGGCCCGCCACGCCTTCGGATCGTCTTCTCTCCGCTTCGGATC GAGGGCGCTCCCTGGACTCGCCCTCTGCCCGACGACAGACAGCTGCCGGTTCTCCTGAGT TCTCCCTGCGGCCCGGACACATAGTATGACCATTACGTGTTTCGTCTCCCAGCCATCTTC TATGGAAAACCCAAGGGATGGGGCCATGATAGCCACTGGCAGCTTTGAGGAATGGGAGGC CTTTAGAGAAGCTTGATCTTGAAGGCCTCAGTGTGAGACCTGACGAAGCCAGATTCCGGC AGAGTTCCTCTATCTCGTCTTGCTGCTGAGTGGAGGCGTCTCCTTCTGCGGTTCCTCTGT GTCTCCTGAGAGCTAGCAGGAAATCAGCATTATGGTTGGATTCAAGGCCACAGAGGTCCC CCCGACTGCCACTGTGAAGTTCCTGGGGGCTGGCACAGCTGCCTGCATCGCAGACCTCAT CACCTTTCCCCTGGACACGGCTAAAGTCCGGCTGCAGATCCAGGGAGAAAGGCGGGGGCC AGTGCAGGCCGCGGCCAGCGCCCAGTACCGCGGGGTGCTGGGCACCATTCTCACCATGGT GCGCAACGAGGGCCCCCGCAGCCTCTACAACGGGCTGGTGGCCGGCCTGCAGCGCCAGAT GAGCTTCGCCTCCGTCCGCATCGGCCTCTACGACTCCGTCAAGCATTTCTACACCAAGGG CTCAGAGCATGCTGGCATCGGGAGCCGCCTCCTGGCAGGCAGCACCACGGGGGCCTTGGC TGTGGCCGTGGCCCAGCCAACAGACGTGGTAAAGGTCCGGTTCCAAGCGCAGGCCCGGGC CGGCGGAGGCCGGCGGTACCGGAGCACTGTCGACGCCTACAAGACCATCGCCCGAGAGGA GGGGCTGCGGGGCCTCTGGAAAGGGACCTCACCCAATGTCGCTCGTAATGCCATTGTCAA CTGTGCTGAGCTGGTGACCTATGACCTCATCAAGGACACGCTCCTGAAGGCCGACCTCAT GACAGATGACCTTCCCTGCCACTTCACGTCCGCCTTCGGGGCGGGCTTCTGCACCACCGT CATCGCCTCTCCCGTGGACGTGGTCAAGACGAGATACATGAACTCTGCCCCGGGCCAGTA CAGCAGCGCTGGCCACTGTGCCCTCACCATGCTCCAGAAGGAGGGTCCCCGAGCCTTCTA CAAAGGGTTCACGCCCTCCTTTCTCCGATTGGGGTCCTGGAACGTGGTGATGTTTGTCAC CTATGAGCAGCTGAAGAGGGCCCTCATGGCTGCCCGCGCTTCCCGGGAGGCTCCCTTTTG AGCCTCTCCTGCTGCCGAGCCGACTGCCTCGGGCTTTGGCTCCTGGCCCCGCTGCCCTCC TCCCTCTATCACCCGCTGCCCCCTTTCCCACCACGTCCCTTCCCGGTCCCCACATTCTCA CCCCTCAGTTCTCCGTTGCCTCTCATGGTTTGTCCCCATGGAGTTGACCCCAACTGACAC TGTGGGAAGCCTGGCATCAGCCAGGATCTCAAGTCCTCCGTCCTTTGAAAAGTTTAGCCC AACTCCTCATCCTGCCCCACCCAGCCCAGTTAGCACATCACCCATAAAACCAGCTCAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 513-1525, + strand, RNAz p=0.914953 | |
| 1245-1348, - strand, RNAz p=0.999384 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 513-1525, + strand, RNAz p=0.914953 | |
| 1245-1348, - strand, RNAz p=0.999384 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 135-290, gnl|bosTau2|chr15 (42255105-42254950) | |
| 135-290, gnl|canFam2|chr21 (27309523-27309339) | |
| 135-290, gnl|dasNov1|scaffold_48010 (6738-6556) | |
| 135-290, gnl|echTel1|scaffold_79754 (2631-2473) | |
| 135-290, gnl|hg17|chr11 (73370161-73370349) | |
| 135-290, gnl|Hg17|chr11 (73370326-73370171) | |
| 135-290, gnl|mm7|chr7 (96540627-96540431) | |
| 135-290, gnl|Mm7|chr7 (96540454-96540611) | |
| 135-290, gnl|monDom2|scaffold_74 (3483175-3482989) | |
| 135-290, gnl|panTro1|chr9 (74652091-74652279) | |
| 135-290, gnl|rheMac2|chr14 (72153385-72153573) | |
| 135-290, gnl|rn3|chr1 (158001987-158001791) | |
| 513-731, gnl|bosTau2|chr15 (42252225-42252007) | |
| 513-731, gnl|Hg17|chr11 (73366794-73366576) | |
| 513-731, gnl|Mm7|chr7 (96543331-96543549) | |
| 922-1029, gnl|bosTau2|chr15 (42250853-42250746) | |
| 922-1029, gnl|canFam2|chr21 (27313805-27313683) | |
| 922-1029, gnl|danRer3|chr10 (33134641-33134762) | |
| 922-1029, gnl|dasNov1|scaffold_192263 (4874-4751) | |
| 922-1029, gnl|echTel1|scaffold_315570 (125918-125796) | |
| 922-1029, gnl|fr1|chrUn (15509908-15509799) | |
| 922-1029, gnl|hg17|chr11 (73365330-73365452) | |
| 922-1029, gnl|Hg17|chr11 (73365437-73365330) | |
| 922-1029, gnl|loxAfr1|scaffold_135631 (4878-5000) | |
| 922-1029, gnl|mm7|chr7 (96544696-96544577) | |
| 922-1029, gnl|Mm7|chr7 (96544587-96544694) | |
| 922-1029, gnl|monDom2|scaffold_74 (3490964-3490840) | |
| 922-1029, gnl|oryCun1|scaffold_215438 (40516-40638) | |
| 922-1029, gnl|panTro1|chr9 (74647247-74647369) | |
| 922-1029, gnl|rheMac2|chr14 (72148288-72148410) | |
| 922-1029, gnl|rn3|chr1 (158005973-158005854) | |
| 922-1029, gnl|tetNig1|chr7 (5474166-5474288) | |
| 922-1029, gnl|xenTro1|scaffold_1234 (32418-32540) | |
| 1206-1618, gnl|bosTau2|chr15 (42249951-42249516) | |
| 1206-1618, gnl|Hg17|chr11 (73363815-73363370) | |
| 1206-1618, gnl|Mm7|chr7 (96545476-96545862) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-290, gnl|bosTau2|chr15 (42255105-42254950) | |
| 135-290, gnl|canFam2|chr21 (27309523-27309339) | |
| 135-290, gnl|dasNov1|scaffold_48010 (6738-6556) | |
| 135-290, gnl|echTel1|scaffold_79754 (2631-2473) | |
| 135-290, gnl|hg17|chr11 (73370161-73370349) | |
| 135-290, gnl|Hg17|chr11 (73370326-73370171) | |
| 135-290, gnl|mm7|chr7 (96540627-96540431) | |
| 135-290, gnl|Mm7|chr7 (96540454-96540611) | |
| 135-290, gnl|monDom2|scaffold_74 (3483175-3482989) | |
| 135-290, gnl|panTro1|chr9 (74652091-74652279) | |
| 135-290, gnl|rheMac2|chr14 (72153385-72153573) | |
| 135-290, gnl|rn3|chr1 (158001987-158001791) | |
| 513-731, gnl|bosTau2|chr15 (42252225-42252007) | |
| 513-731, gnl|Hg17|chr11 (73366794-73366576) | |
| 513-731, gnl|Mm7|chr7 (96543331-96543549) | |
| 922-1029, gnl|bosTau2|chr15 (42250853-42250746) | |
| 922-1029, gnl|canFam2|chr21 (27313805-27313683) | |
| 922-1029, gnl|danRer3|chr10 (33134641-33134762) | |
| 922-1029, gnl|dasNov1|scaffold_192263 (4874-4751) | |
| 922-1029, gnl|echTel1|scaffold_315570 (125918-125796) | |
| 922-1029, gnl|fr1|chrUn (15509908-15509799) | |
| 922-1029, gnl|hg17|chr11 (73365330-73365452) | |
| 922-1029, gnl|Hg17|chr11 (73365437-73365330) | |
| 922-1029, gnl|loxAfr1|scaffold_135631 (4878-5000) | |
| 922-1029, gnl|mm7|chr7 (96544696-96544577) | |
| 922-1029, gnl|Mm7|chr7 (96544587-96544694) | |
| 922-1029, gnl|monDom2|scaffold_74 (3490964-3490840) | |
| 922-1029, gnl|oryCun1|scaffold_215438 (40516-40638) | |
| 922-1029, gnl|panTro1|chr9 (74647247-74647369) | |
| 922-1029, gnl|rheMac2|chr14 (72148288-72148410) | |
| 922-1029, gnl|rn3|chr1 (158005973-158005854) | |
| 922-1029, gnl|tetNig1|chr7 (5474166-5474288) | |
| 922-1029, gnl|xenTro1|scaffold_1234 (32418-32540) | |
| 1206-1618, gnl|bosTau2|chr15 (42249951-42249516) | |
| 1206-1618, gnl|Hg17|chr11 (73363815-73363370) | |
| 1206-1618, gnl|Mm7|chr7 (96545476-96545862) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| clu (1.5554) | |
| nco (0.323468) | |
| cag (0.302389) | |
| cly (0.241284) | |
| ece (0.229305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.5554) | |
| nco (0.323468) | |
| cag (0.302389) | |
| cly (0.241284) | |
| ece (0.229305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| med (0.116252) | |
| nbm (0.0993246) |