Ss1.1-Tra1-TCH01B090003.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCGACGCTATAGCGCCAGCGGCCGCCGCCACCGCGTGCCCGCCCCTCAGACAGGTGC TCAAAGCAAATCAGAGAGCGAAAGAAACAGGCGAGGGAATTAGAAGGAGTCCTCAAATCA GAGAGCGAAAGAAACAGGCGAGGGAGTTAGAAGTTCTCAAGGTGTTTCTTGCCGGCCGGT ACCTGCGCTTCGTTGTCAATACCATGGACAGCGCCTGCAAACCAACTCAAAGGCGCTTGG ATGCCGCTGGCTTCTGGCAGATCTGGCAGCGCTTTGACGCGGATGAAAAAGGTTACATAG AAGAGAAGGAGCTTGATGCTTTCTTTCATCACGTGTTGACGAAATTGGGTACTGATGATG CAGTCATGGAAGAAAATGTGTGGAAGATGAAGCAACAATTTATGGCTGCCCATGACGTCT CTAAAGATGGTCACATACAGATGAAAGAGGAAACCCCTTTGGACAGCAGTGTGGAGTTTA TGCAGATCTGGCGCAAATATGATGCTGACAGCAGTGGCTTTATATCAGCTGCTGAACTTT GTAACTTCCTCCGAGACCTTTTCCTCCACCACAAAAAGGCCATTTCGGAGGCTAAGCTGG AAGAATATACTGGCACCATGATGAAGATCTTTGACAAAAATAAAGATGGCCGGTTGGATC TTAATGATTTGGCAAGAATTCTGGCTCTTCAGGAAAATTTCCTTCTCCAATTTAAAATGG ATGCTTGTTCCACTGAAGAAAGAAAGAGGGACTTTGAGAAAATCTTTGCTCACTATGATG TTAGTAAAACTGGAGCTCTAGAAGGCCCAGAAGTGGATGGGTTTGTCAAAGACATGATGG AGCTTGTCCAGCCCAGCATCAGTGGGGTGGACCTTGATAAGTTCCGGGAGATTCTCTTGC GTCACTGCGATGTGAACAAGGATGGAAAAATTCAGAAGTCTGAGCTGGCTTTGTGCCTTG GCCTGAAAATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCGACGCTATAGCGCCAGCGGCCGCCGCCACCGCGTGCCCGCCCCTCAGACAGGTGC TCAAAGCAAATCAGAGAGCGAAAGAAACAGGCGAGGGAATTAGAAGGAGTCCTCAAATCA GAGAGCGAAAGAAACAGGCGAGGGAGTTAGAAGTTCTCAAGGTGTTTCTTGCCGGCCGGT ACCTGCGCTTCGTTGTCAATACCATGGACAGCGCCTGCAAACCAACTCAAAGGCGCTTGG ATGCCGCTGGCTTCTGGCAGATCTGGCAGCGCTTTGACGCGGATGAAAAAGGTTACATAG AAGAGAAGGAGCTTGATGCTTTCTTTCATCACGTGTTGACGAAATTGGGTACTGATGATG CAGTCATGGAAGAAAATGTGTGGAAGATGAAGCAACAATTTATGGCTGCCCATGACGTCT CTAAAGATGGTCACATACAGATGAAAGAGGAAACCCCTTTGGACAGCAGTGTGGAGTTTA TGCAGATCTGGCGCAAATATGATGCTGACAGCAGTGGCTTTATATCAGCTGCTGAACTTT GTAACTTCCTCCGAGACCTTTTCCTCCACCACAAAAAGGCCATTTCGGAGGCTAAGCTGG AAGAATATACTGGCACCATGATGAAGATCTTTGACAAAAATAAAGATGGCCGGTTGGATC TTAATGATTTGGCAAGAATTCTGGCTCTTCAGGAAAATTTCCTTCTCCAATTTAAAATGG ATGCTTGTTCCACTGAAGAAAGAAAGAGGGACTTTGAGAAAATCTTTGCTCACTATGATG TTAGTAAAACTGGAGCTCTAGAAGGCCCAGAAGTGGATGGGTTTGTCAAAGACATGATGG AGCTTGTCCAGCCCAGCATCAGTGGGGTGGACCTTGATAAGTTCCGGGAGATTCTCTTGC GTCACTGCGATGTGAACAAGGATGGAAAAATTCAGAAGTCTGAGCTGGCTTTGTGCCTTG GCCTGAAAATCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 151-283, gnl|bosTau2|chr23 (26252989-26253121) | |
| 151-283, gnl|canFam2|chr35 (26618480-26619022) | |
| 151-283, gnl|echTel1|scaffold_194956 (4113-4688) | |
| 151-283, gnl|hg17|chr6 (25760114-25760643) | |
| 151-283, gnl|Hg17|chr6 (25760561-25760690) | |
| 151-283, gnl|loxAfr1|scaffold_74920 (6521-7103) | |
| 151-283, gnl|mm7|chr13 (23357311-23356805) | |
| 151-283, gnl|Mm7|chr13 (23356862-23356756) | |
| 151-283, gnl|monDom2|scaffold_3 (116318489-116319099) | |
| 151-283, gnl|oryCun1|scaffold_200646 (75545-75939) | |
| 151-283, gnl|panTro1|chr5 (26233439-26233968) | |
| 151-283, gnl|rheMac2|chr4 (25649951-25650480) | |
| 151-283, gnl|rn3|chr17 (48227468-48227948) | |
| 351-450, gnl|bosTau2|chr23 (26263621-26263721) | |
| 351-450, gnl|canFam2|chr35 (26623805-26624616) | |
| 351-450, gnl|dasNov1|scaffold_10851 (14812-14022) | |
| 351-450, gnl|echTel1|scaffold_129145 (266-988) | |
| 351-450, gnl|hg17|chr6 (25769021-25769817) | |
| 351-450, gnl|Hg17|chr6 (25769752-25769867) | |
| 351-450, gnl|loxAfr1|scaffold_288 (63651-62843) | |
| 351-450, gnl|mm7|chr13 (23347991-23347318) | |
| 351-450, gnl|Mm7|chr13 (23347381-23347281) | |
| 351-450, gnl|oryCun1|scaffold_200646 (83490-84331) | |
| 351-450, gnl|panTro1|chr5 (26242327-26243122) | |
| 351-450, gnl|rheMac2|chr4 (25658917-25659713) | |
| 351-450, gnl|rn3|chr17 (48236432-48237113) | |
| 849-972, gnl|bosTau2|chr23 (26304005-26304128) | |
| 849-972, gnl|canFam2|chr35 (26654087-26654271) | |
| 849-972, gnl|danRer3|chr16 (1537395-1537214) | |
| 849-972, gnl|echTel1|scaffold_15947 (1584-1396) | |
| 849-972, gnl|fr1|chrUn (258483263-258483419) | |
| 849-972, gnl|galGal2|chr2 (89773330-89773137) | |
| 849-972, gnl|hg17|chr6 (25809379-25809562) | |
| 849-972, gnl|Hg17|chr6 (25809411-25809534) | |
| 849-972, gnl|loxAfr1|scaffold_288 (29804-29624) | |
| 849-972, gnl|mm7|chr13 (23319820-23319640) | |
| 849-972, gnl|Mm7|chr13 (23319789-23319666) | |
| 849-972, gnl|monDom2|scaffold_3 (116387214-116387396) | |
| 849-972, gnl|oryCun1|scaffold_134307 (13706-13533) | |
| 849-972, gnl|panTro1|chr5 (26282428-26282611) | |
| 849-972, gnl|rheMac2|chr4 (25699720-25699903) | |
| 849-972, gnl|rn3|chr17 (48269189-48269369) | |
| 849-972, gnl|xenTro1|scaffold_185 (1600041-1600216) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-283, gnl|bosTau2|chr23 (26252989-26253121) | |
| 151-283, gnl|canFam2|chr35 (26618480-26619022) | |
| 151-283, gnl|echTel1|scaffold_194956 (4113-4688) | |
| 151-283, gnl|hg17|chr6 (25760114-25760643) | |
| 151-283, gnl|Hg17|chr6 (25760561-25760690) | |
| 151-283, gnl|loxAfr1|scaffold_74920 (6521-7103) | |
| 151-283, gnl|mm7|chr13 (23357311-23356805) | |
| 151-283, gnl|Mm7|chr13 (23356862-23356756) | |
| 151-283, gnl|monDom2|scaffold_3 (116318489-116319099) | |
| 151-283, gnl|oryCun1|scaffold_200646 (75545-75939) | |
| 151-283, gnl|panTro1|chr5 (26233439-26233968) | |
| 151-283, gnl|rheMac2|chr4 (25649951-25650480) | |
| 151-283, gnl|rn3|chr17 (48227468-48227948) | |
| 351-450, gnl|bosTau2|chr23 (26263621-26263721) | |
| 351-450, gnl|canFam2|chr35 (26623805-26624616) | |
| 351-450, gnl|dasNov1|scaffold_10851 (14812-14022) | |
| 351-450, gnl|echTel1|scaffold_129145 (266-988) | |
| 351-450, gnl|hg17|chr6 (25769021-25769817) | |
| 351-450, gnl|Hg17|chr6 (25769752-25769867) | |
| 351-450, gnl|loxAfr1|scaffold_288 (63651-62843) | |
| 351-450, gnl|mm7|chr13 (23347991-23347318) | |
| 351-450, gnl|Mm7|chr13 (23347381-23347281) | |
| 351-450, gnl|oryCun1|scaffold_200646 (83490-84331) | |
| 351-450, gnl|panTro1|chr5 (26242327-26243122) | |
| 351-450, gnl|rheMac2|chr4 (25658917-25659713) | |
| 351-450, gnl|rn3|chr17 (48236432-48237113) | |
| 849-972, gnl|bosTau2|chr23 (26304005-26304128) | |
| 849-972, gnl|canFam2|chr35 (26654087-26654271) | |
| 849-972, gnl|danRer3|chr16 (1537395-1537214) | |
| 849-972, gnl|echTel1|scaffold_15947 (1584-1396) | |
| 849-972, gnl|fr1|chrUn (258483263-258483419) | |
| 849-972, gnl|galGal2|chr2 (89773330-89773137) | |
| 849-972, gnl|hg17|chr6 (25809379-25809562) | |
| 849-972, gnl|Hg17|chr6 (25809411-25809534) | |
| 849-972, gnl|loxAfr1|scaffold_288 (29804-29624) | |
| 849-972, gnl|mm7|chr13 (23319820-23319640) | |
| 849-972, gnl|Mm7|chr13 (23319789-23319666) | |
| 849-972, gnl|monDom2|scaffold_3 (116387214-116387396) | |
| 849-972, gnl|oryCun1|scaffold_134307 (13706-13533) | |
| 849-972, gnl|panTro1|chr5 (26282428-26282611) | |
| 849-972, gnl|rheMac2|chr4 (25699720-25699903) | |
| 849-972, gnl|rn3|chr17 (48269189-48269369) | |
| 849-972, gnl|xenTro1|scaffold_185 (1600041-1600216) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) |