Non-Coding RNA Search

Ss1.1-Tra1-TCH01B090066.5

Sequence:


               
               CGCTGAGCGAGGCCGGGGATCTAATCCTCAACCTCATGGTTCCTAGTCAGATTCGTTAAC
CACTGCGCCACAACAGGAACTCCTATTTTCCATCTTTAATAGGCTCCTTCCTACACTATC
TCCCCCTTCAACCATGTCCCAGTTAGAAGGCTTTAGAAGGGCAGGAACATTGCCATAGGT
GACCTGCCTGAGGCAAAGGATAAACACGTTTGAGGAAAATGGACAGGCGGATCACTCAGG
GGAACGCTTTGGGTCTTTCAGGTGGCCATGGCGAAGTCCTGTTTGAGAAGGTGCGTGTGC
CCAAGGAGAACATGGTCCTGGGCCCCGGCCGGGGCTTTGAGATCGCTCAGGGCCGACTGG
GTCCTGGCAGGATCCATCACTGCATGCGGCTGATAGGGTGCTCGGAGAGGGCACTGGCGC
TCATGAAGGCACGAGTGAGTGCTTCCCTTTGTACCCGTCTCTGTCCCAGAACCACCCATT
TATTTTCCTATCAGACTCCAAATTCTGTTTTCTGAGAGCAGACTCAGTGGGTAAAGCTAG
GTGATATTCTTTATAAGAAGCTGTGTCCCTGCCTTTGCTTTGCATCTGCTACTTTGCTGA
AATTTGAAATGCTGCAGAGAACGGGCCACACTGTTGAGGTGACCAGAAGGAAAAGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGAGCGAGGCCGGGGATCTAATCCTCAACCTCATGGTTCCTAGTCAGATTCGTTAAC
CACTGCGCCACAACAGGAACTCCTATTTTCCATCTTTAATAGGCTCCTTCCTACACTATC
TCCCCCTTCAACCATGTCCCAGTTAGAAGGCTTTAGAAGGGCAGGAACATTGCCATAGGT
GACCTGCCTGAGGCAAAGGATAAACACGTTTGAGGAAAATGGACAGGCGGATCACTCAGG
GGAACGCTTTGGGTCTTTCAGGTGGCCATGGCGAAGTCCTGTTTGAGAAGGTGCGTGTGC
CCAAGGAGAACATGGTCCTGGGCCCCGGCCGGGGCTTTGAGATCGCTCAGGGCCGACTGG
GTCCTGGCAGGATCCATCACTGCATGCGGCTGATAGGGTGCTCGGAGAGGGCACTGGCGC
TCATGAAGGCACGAGTGAGTGCTTCCCTTTGTACCCGTCTCTGTCCCAGAACCACCCATT
TATTTTCCTATCAGACTCCAAATTCTGTTTTCTGAGAGCAGACTCAGTGGGTAAAGCTAG
GTGATATTCTTTATAAGAAGCTGTGTCCCTGCCTTTGCTTTGCATCTGCTACTTTGCTGA
AATTTGAAATGCTGCAGAGAACGGGCCACACTGTTGAGGTGACCAGAAGGAAAAGGCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-199, - strand, RNAz p=0.774537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-199, - strand, RNAz p=0.774537

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               84-444, gnl|bosTau2|chr17 (38686472-38686826)
               

               
               84-444, gnl|Hg17|chr12 (110649516-110649926)
               

               
               84-444, gnl|Mm7|chr5 (120860597-120860290)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-444, gnl|bosTau2|chr17 (38686472-38686826)
               

               
               84-444, gnl|Hg17|chr12 (110649516-110649926)
               

               
               84-444, gnl|Mm7|chr5 (120860597-120860290)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               rec (0.17307)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	84-444, gnl\|bosTau2\|chr17 (38686472-38686826)
	84-444, gnl\|Hg17\|chr12 (110649516-110649926)
	84-444, gnl\|Mm7\|chr5 (120860597-120860290)