Non-Coding RNA Search

Ss1.1-Tra1-TCH01B090072.5

Sequence:


               
               TCCAGACATCTCCTACCTACGGTTTGGGGTTTTTTTTCTTAAAGGCGAGGCTTGCATTCC
TCAGCAGCTATGTACAAAGCTCCCTGAAACCTCGTCTCTCTAAAGTTACTGTGCTGGGCT
TTCCAAGGCTGAGAGCGCCTAATACATGGGGAAGCACTTCCTTGAGGTGGAAGATCTCTC
CCTTCACCTTTCCTCTTTTTCCCTGCAGGCTAGTGCCTACTTTTTATCAGTTTGCACAAT
CGCTTAGATAAACACCGAGGAGGAGATTCTCTTTAATTATCAAAGACACATCTTTTCAGG
GGGCCAACAAAGCGTTTATTTCACCCGCCAAACTAAAGGAGAGTTATTCCAGTTTAGAAG
GAAGATGCAAGCGGTTTGGGACCTTGAACAAGGCAAATATGGTTTTGCGGTGCAGAGGGG
CAGGATGCCGCCCACCCAGCCGACCCATGGGCAGTTTGCGCTGACCAACGGGGACCCTCT
CAACTGCCACTCGTACCTGTCGGGATATATTTCTCTGCTGCTGCGCGCCGAGCCCTATCC
CACGTCACGCTTCGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACAT
TTGCGAACTGGCCGCTCGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTT
CTTCCCTGACCTGCAGATCACCGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCT
GTTCGTGCTGAACGCAGCACAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGC
CGCCGGCCTACACGCCTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACAT
ACGGATCTTCCAAGAGCAAGTGGAGAAGCTTAAAGCGCTGCACGTCGACTCCGCCGAGTA
CAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAGATGCCTGTGGTCTCTCTGATGTAGC
CCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAATACGTTAGGAGCCA
GTACCCCAACCAACCAACGCGATTCGGAAAGCTTTTGCTTCGCCTCCCTTCCCTCCGCAC
GGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCAT
CGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCGTATATGGC
AATTCAATAAATAAATAAATCAAAATGAGAAGGGGGAGTGAAACAGAGAGAAAGAAAAGG
CAAAAGACTGGTTTGTTTGCTTAAATTCCTTCTGTTAAGAAAGGATATAAAAGGATGTTA
CAAGTTTGCTAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCCAAAAAAAAA
AGACTGTCAAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAACTCCTGTGTCGGTCA
GAACAACTTGCTACTTATCATTTTGGTATAAAAAGGAAATTAGTCTTTTTTCTTTTTTGG
TAAATTTTGGAAAAATATTGCTAAAAGTGCATTTAAGGAGATTGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGACATCTCCTACCTACGGTTTGGGGTTTTTTTTCTTAAAGGCGAGGCTTGCATTCC
TCAGCAGCTATGTACAAAGCTCCCTGAAACCTCGTCTCTCTAAAGTTACTGTGCTGGGCT
TTCCAAGGCTGAGAGCGCCTAATACATGGGGAAGCACTTCCTTGAGGTGGAAGATCTCTC
CCTTCACCTTTCCTCTTTTTCCCTGCAGGCTAGTGCCTACTTTTTATCAGTTTGCACAAT
CGCTTAGATAAACACCGAGGAGGAGATTCTCTTTAATTATCAAAGACACATCTTTTCAGG
GGGCCAACAAAGCGTTTATTTCACCCGCCAAACTAAAGGAGAGTTATTCCAGTTTAGAAG
GAAGATGCAAGCGGTTTGGGACCTTGAACAAGGCAAATATGGTTTTGCGGTGCAGAGGGG
CAGGATGCCGCCCACCCAGCCGACCCATGGGCAGTTTGCGCTGACCAACGGGGACCCTCT
CAACTGCCACTCGTACCTGTCGGGATATATTTCTCTGCTGCTGCGCGCCGAGCCCTATCC
CACGTCACGCTTCGGCAGCCAGTGCATGCAGCCCAACAACATCATGGGCATCGAGAACAT
TTGCGAACTGGCCGCTCGGATGCTCTTCAGCGCCGTCGAGTGGGCCCGGAACATCCCCTT
CTTCCCTGACCTGCAGATCACCGACCAGGTGGCCCTGCTTCGCCTCACCTGGAGCGAGCT
GTTCGTGCTGAACGCAGCACAGTGCTCCATGCCCCTCCACGTCGCCCCGCTCCTGGCCGC
CGCCGGCCTACACGCCTCGCCCATGTCCGCCGACCGGGTGGTCGCCTTTATGGACCACAT
ACGGATCTTCCAAGAGCAAGTGGAGAAGCTTAAAGCGCTGCACGTCGACTCCGCCGAGTA
CAGCTGCCTCAAGGCCATAGTCCTGTTCACCTCAGATGCCTGTGGTCTCTCTGATGTAGC
CCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAATACGTTAGGAGCCA
GTACCCCAACCAACCAACGCGATTCGGAAAGCTTTTGCTTCGCCTCCCTTCCCTCCGCAC
GGTCTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCGTTTGGTAGGTAAAACCCCCAT
CGAAACCCTCATCCGGGATATGTTACTGTCCGGCAGCAGTTTTAACTGGCCGTATATGGC
AATTCAATAAATAAATAAATCAAAATGAGAAGGGGGAGTGAAACAGAGAGAAAGAAAAGG
CAAAAGACTGGTTTGTTTGCTTAAATTCCTTCTGTTAAGAAAGGATATAAAAGGATGTTA
CAAGTTTGCTAAAAGAAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCCAAAAAAAAA
AGACTGTCAAATGAACTTTTACAGAATGCATTAAAAAAAAAAAAACTCCTGTGTCGGTCA
GAACAACTTGCTACTTATCATTTTGGTATAAAAAGGAAATTAGTCTTTTTTCTTTTTTGG
TAAATTTTGGAAAAATATTGCTAAAAGTGCATTTAAGGAGATTGGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47211605|emb|CAF91926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47211605|emb|CAF91926.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               115-272, - strand, RNAz p=0.877444
               

               
               972-1091, - strand, RNAz p=0.595293
               

               
               1132-1251, + strand, RNAz p=0.914736

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-272, - strand, RNAz p=0.877444
               

               
               972-1091, - strand, RNAz p=0.595293
               

               
               1132-1251, + strand, RNAz p=0.914736

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC014664, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC014664, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-407, gnl|bosTau2|chr21 (5741014-5741421)
               

               
               1-407, gnl|Hg17|chr15 (94670179-94670585)
               

               
               1-407, gnl|Mm7|chr7 (66222231-66221821)
               


               
               585-930, gnl|bosTau2|chr7 (2838169-2838514)
               

               
               585-930, gnl|Hg17|chr19 (17207658-17207313)
               

               
               585-930, gnl|Mm7|chr8 (69843145-69842800)
               


               
               933-1548, gnl|bosTau2|chr21 (5752293-5752913)
               

               
               933-1548, gnl|Hg17|chr15 (94681578-94682192)
               

               
               933-1548, gnl|Mm7|chr7 (66210662-66210039)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-407, gnl|bosTau2|chr21 (5741014-5741421)
               

               
               1-407, gnl|Hg17|chr15 (94670179-94670585)
               

               
               1-407, gnl|Mm7|chr7 (66222231-66221821)
               


               
               585-930, gnl|bosTau2|chr7 (2838169-2838514)
               

               
               585-930, gnl|Hg17|chr19 (17207658-17207313)
               

               
               585-930, gnl|Mm7|chr8 (69843145-69842800)
               


               
               933-1548, gnl|bosTau2|chr21 (5752293-5752913)
               

               
               933-1548, gnl|Hg17|chr15 (94681578-94682192)
               

               
               933-1548, gnl|Mm7|chr7 (66210662-66210039)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cut (1.52931)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               spl (0.286369)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (1.52931)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               spl (0.286369)
               

               
               hea (0.204499)
               

               
               sin (0.174948)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

	115-272, - strand, RNAz p=0.877444
	972-1091, - strand, RNAz p=0.595293
	1132-1251, + strand, RNAz p=0.914736

	1-407, gnl\|bosTau2\|chr21 (5741014-5741421)
	1-407, gnl\|Hg17\|chr15 (94670179-94670585)
	1-407, gnl\|Mm7\|chr7 (66222231-66221821)

	585-930, gnl\|bosTau2\|chr7 (2838169-2838514)
	585-930, gnl\|Hg17\|chr19 (17207658-17207313)
	585-930, gnl\|Mm7\|chr8 (69843145-69842800)

	933-1548, gnl\|bosTau2\|chr21 (5752293-5752913)
	933-1548, gnl\|Hg17\|chr15 (94681578-94682192)
	933-1548, gnl\|Mm7\|chr7 (66210662-66210039)

	cut (1.52931)
	elu (0.385356)
	cki (0.330469)
	spl (0.286369)
	hea (0.204499)
	sin (0.174948)
	csp (0.161186)
	cag (0.151194)
	csk (0.140746)
	pla (0.133672)
	cov (0.132153)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)