Ss1.1-Tra1-TCH01B100014.5.60
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGCTCGAACTTGTCCAGGTTGGCGGCCCCCGGCGCGGGCGGCCCGGATGCGCCAAGCG GCCCTGGGCAAAGGGAGGGCGCGGTGGGCTCGCTGGGCCGGCGCCCCGGACGGTGGGAGC CGGGGAGCGGCAGGAGGAGGAAGAGACCTTGGGGAGGTGGCCTCCAGACGCGGCCCTGAT GACTGAACTACAGCAAGATGTGGACGACACCAAGCCTGCCAAAGTGCTCGGGAAGAGAGA GGGCAAAGTTGGCTCAGCCCACTCAGAGGCTGAGAACGGTGTGGAGGAGAAAAAGAAGGT CTGCAGGTCGCCAACAGCCCTGTCCCCTGCCCCGTCCAGCGAGGCCGAGTCTCCAGACCA GAAGAGAATCATTTCCCTGCGGTCCAAATCCAGCTTTGACGGTGCCTCTTTAGCAAGCGA GAAGAACGACTGTAAGACAGAAAGCAAGAATGACGCGAAGATTGAAAGGAAAAAGTCCTC CTCATCCAGCCAGGACAAAGCCAACATGCATTTCCACAAGCTGTTTCTGGATGTCCCCAC GGAGGAACCCCTGAAGCAAAGTTTTACCTGTGCCCTGCAAAAAGAAATATTATACCAGGG GAAGCTCTTTGTATCAGACAACTGGATTTGTTTTCATTCCAAGGTCTTTGGAAAAGACAC TAAGATCTCGATTCCAGCTTTCTCGGTAACCCTGATAAAGAAAACCAAAACTGCCCTTCT GGTGCCAAATGCCCTGATTATAGCGACGGTCACAGACAGGTACATATTTGTCTCCTTACT CTCCAGAGATTCAACTTACAAACTGCTAAAATCTGTGTGTGGACATTTAGAAAATGCAAG CATTGGCAACAGCCCCAATCCGTCTTCCCTTGAAAACAGTTTCCGGGCAGACCGCCCTTC ATCTCTGCCTCTGGATTTCAACGATGAATTCTCGGATCTGGATGGAGTGGTTCGGCAAAG AAGGCAGGACATGGAGGGATACAGCAGTTCTGGATCTCAGACTCCTGAATCTGAGAACTC TCGAGATTTCCATGTGACAGAATCCCAGACAGTTCTCAACGTGTCCAAGGGAGAAGCAAA ACCAACTCGGACAGATGCCCTCGTGAACAGAGTGCCTGAAGGCAAAGCCAAGAGTCTTCC CACACATGGTCAGTCGGAACTCAGTGGAATTGTACACAGAGTAAAGTCTCAGAAATGTCC AACTCTCCACCAGATTCTTATATTCTATGCAATTGTTGTCTGCGCACTAATCATCTCGAC CTTCTACATGAGATACAGAATTAATACGCTGGAGGAGCAGCTGGGGTCACTCACCTCCTC TGTGGACACCCACCAGCCCGAACAGCCAGCCCCCTCCGGCCTGGGATCACAAGTGCAGTT AAACGTGGAAGTCCTCTGCCAAGAGCTTACAGCCAACATAATGAGATTGGAAAAGATACA AAACAACTTACAAAAGCTGCTCGAGAATGGTGACTGACCGCCCAGATGGCTTGGGCCAAT GGAATACCTCGCACTTTCCCTTTGAAGTAGGTGCTCCCCGAGGCGTTCTGGTGGAGCGCC CCCTTCTGGCCAGAAGAGCGAGCAGACGGGCGTCCCCAGCCTCGCTTGCCCCTGGTGGTC TCCGGCTCAGCAAAACGGAAAGGGAATAATTTTGGTTCCCGTGCAATAAAAGTGGACCTT CACTCTCTGAGGAAGTTTTCAATGCTGCTGCCTGAAGAAAACAGACCCATCTCTGGAGGT CTCGGGAAGGGCCCAGTGGACATCCTTGGATGGTTGTGATTTAGCAGGTTCATGTGACTG TCAGCAAATACACTCCACTCCAGGCCTTTTCAGCCCTCCCTGCCCTCCTTTGCTCTCCTG TACACCCCTCTTAACCGACCTGCAAACTAAGGGATGGATAGATCATGTGCCAACAAACTT GATTGATGGAGTTCTTTAAAGAATTAGCCATGGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGCTCGAACTTGTCCAGGTTGGCGGCCCCCGGCGCGGGCGGCCCGGATGCGCCAAGCG GCCCTGGGCAAAGGGAGGGCGCGGTGGGCTCGCTGGGCCGGCGCCCCGGACGGTGGGAGC CGGGGAGCGGCAGGAGGAGGAAGAGACCTTGGGGAGGTGGCCTCCAGACGCGGCCCTGAT GACTGAACTACAGCAAGATGTGGACGACACCAAGCCTGCCAAAGTGCTCGGGAAGAGAGA GGGCAAAGTTGGCTCAGCCCACTCAGAGGCTGAGAACGGTGTGGAGGAGAAAAAGAAGGT CTGCAGGTCGCCAACAGCCCTGTCCCCTGCCCCGTCCAGCGAGGCCGAGTCTCCAGACCA GAAGAGAATCATTTCCCTGCGGTCCAAATCCAGCTTTGACGGTGCCTCTTTAGCAAGCGA GAAGAACGACTGTAAGACAGAAAGCAAGAATGACGCGAAGATTGAAAGGAAAAAGTCCTC CTCATCCAGCCAGGACAAAGCCAACATGCATTTCCACAAGCTGTTTCTGGATGTCCCCAC GGAGGAACCCCTGAAGCAAAGTTTTACCTGTGCCCTGCAAAAAGAAATATTATACCAGGG GAAGCTCTTTGTATCAGACAACTGGATTTGTTTTCATTCCAAGGTCTTTGGAAAAGACAC TAAGATCTCGATTCCAGCTTTCTCGGTAACCCTGATAAAGAAAACCAAAACTGCCCTTCT GGTGCCAAATGCCCTGATTATAGCGACGGTCACAGACAGGTACATATTTGTCTCCTTACT CTCCAGAGATTCAACTTACAAACTGCTAAAATCTGTGTGTGGACATTTAGAAAATGCAAG CATTGGCAACAGCCCCAATCCGTCTTCCCTTGAAAACAGTTTCCGGGCAGACCGCCCTTC ATCTCTGCCTCTGGATTTCAACGATGAATTCTCGGATCTGGATGGAGTGGTTCGGCAAAG AAGGCAGGACATGGAGGGATACAGCAGTTCTGGATCTCAGACTCCTGAATCTGAGAACTC TCGAGATTTCCATGTGACAGAATCCCAGACAGTTCTCAACGTGTCCAAGGGAGAAGCAAA ACCAACTCGGACAGATGCCCTCGTGAACAGAGTGCCTGAAGGCAAAGCCAAGAGTCTTCC CACACATGGTCAGTCGGAACTCAGTGGAATTGTACACAGAGTAAAGTCTCAGAAATGTCC AACTCTCCACCAGATTCTTATATTCTATGCAATTGTTGTCTGCGCACTAATCATCTCGAC CTTCTACATGAGATACAGAATTAATACGCTGGAGGAGCAGCTGGGGTCACTCACCTCCTC TGTGGACACCCACCAGCCCGAACAGCCAGCCCCCTCCGGCCTGGGATCACAAGTGCAGTT AAACGTGGAAGTCCTCTGCCAAGAGCTTACAGCCAACATAATGAGATTGGAAAAGATACA AAACAACTTACAAAAGCTGCTCGAGAATGGTGACTGACCGCCCAGATGGCTTGGGCCAAT GGAATACCTCGCACTTTCCCTTTGAAGTAGGTGCTCCCCGAGGCGTTCTGGTGGAGCGCC CCCTTCTGGCCAGAAGAGCGAGCAGACGGGCGTCCCCAGCCTCGCTTGCCCCTGGTGGTC TCCGGCTCAGCAAAACGGAAAGGGAATAATTTTGGTTCCCGTGCAATAAAAGTGGACCTT CACTCTCTGAGGAAGTTTTCAATGCTGCTGCCTGAAGAAAACAGACCCATCTCTGGAGGT CTCGGGAAGGGCCCAGTGGACATCCTTGGATGGTTGTGATTTAGCAGGTTCATGTGACTG TCAGCAAATACACTCCACTCCAGGCCTTTTCAGCCCTCCCTGCCCTCCTTTGCTCTCCTG TACACCCCTCTTAACCGACCTGCAAACTAAGGGATGGATAGATCATGTGCCAACAAACTT GATTGATGGAGTTCTTTAAAGAATTAGCCATGGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 561-664, + strand, RNAz p=0.590834 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 561-664, + strand, RNAz p=0.590834 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-266, gnl|bosTau2|chr7 (23295765-23296027) | |
| 1-266, gnl|canFam2|chr11 (18719422-18720167) | |
| 1-266, gnl|echTel1|scaffold_324024 (2914-2153) | |
| 1-266, gnl|hg17|chr5 (125786546-125787298) | |
| 1-266, gnl|Hg17|chr5 (125787007-125787285) | |
| 1-266, gnl|loxAfr1|scaffold_7092 (15844-16596) | |
| 1-266, gnl|mm7|chr18 (56813297-56813996) | |
| 1-266, gnl|Mm7|chr18 (56813761-56813984) | |
| 1-266, gnl|monDom2|scaffold_60 (187481-186683) | |
| 1-266, gnl|panTro1|chr4 (132113153-132113905) | |
| 1-266, gnl|rheMac2|chr6 (122808946-122809683) | |
| 1-266, gnl|rn3|chr18 (52247347-52248059) | |
| 373-494, gnl|bosTau2|chr7 (23492812-23492691) | |
| 373-494, gnl|canFam2|chr11 (18766051-18766179) | |
| 373-494, gnl|dasNov1|scaffold_71210 (9700-9572) | |
| 373-494, gnl|echTel1|scaffold_324337 (7430-7302) | |
| 373-494, gnl|galGal2|chrUn (3081518-3081414) | |
| 373-494, gnl|hg17|chr5 (125833255-125833383) | |
| 373-494, gnl|Hg17|chr5 (125833259-125833380) | |
| 373-494, gnl|loxAfr1|scaffold_3696 (122169-122038) | |
| 373-494, gnl|mm7|chr18 (56855629-56855757) | |
| 373-494, gnl|Mm7|chr18 (56855633-56855754) | |
| 373-494, gnl|monDom2|scaffold_60 (164310-164179) | |
| 373-494, gnl|oryCun1|scaffold_211207 (135774-135903) | |
| 373-494, gnl|panTro1|chr4 (132159878-132160006) | |
| 373-494, gnl|rheMac2|chr6 (122852234-122852362) | |
| 373-494, gnl|rn3|chr18 (52288551-52288679) | |
| 561-664, gnl|bosTau2|chr7 (23489227-23489124) | |
| 561-664, gnl|Hg17|chr5 (125836856-125836959) | |
| 561-664, gnl|Mm7|chr18 (56860472-56860575) | |
| 1024-1150, gnl|bosTau2|chr7 (23479593-23479467) | |
| 1024-1150, gnl|canFam2|chr11 (18780475-18780611) | |
| 1024-1150, gnl|dasNov1|scaffold_4791 (43191-43327) | |
| 1024-1150, gnl|echTel1|scaffold_312897 (54225-54088) | |
| 1024-1150, gnl|galGal2|chrUn (3072606-3072470) | |
| 1024-1150, gnl|hg17|chr5 (125847987-125848123) | |
| 1024-1150, gnl|Hg17|chr5 (125847991-125848117) | |
| 1024-1150, gnl|loxAfr1|scaffold_3696 (105224-105088) | |
| 1024-1150, gnl|mm7|chr18 (56871232-56871368) | |
| 1024-1150, gnl|Mm7|chr18 (56871236-56871362) | |
| 1024-1150, gnl|monDom2|scaffold_60 (142669-142533) | |
| 1024-1150, gnl|oryCun1|scaffold_170866 (24305-24169) | |
| 1024-1150, gnl|panTro1|chr4 (132174449-132174585) | |
| 1024-1150, gnl|rheMac2|chr6 (122867425-122867561) | |
| 1024-1150, gnl|rn3|chr18 (52302918-52303054) | |
| 1237-1357, gnl|bosTau2|chr7 (23476220-23476099) | |
| 1237-1357, gnl|Hg17|chr5 (125850464-125850585) | |
| 1237-1357, gnl|Mm7|chr18 (56873518-56873636) | |
| 1433-1955, gnl|bosTau2|chr7 (23467221-23466724) | |
| 1433-1955, gnl|Hg17|chr5 (125856503-125856999) | |
| 1433-1955, gnl|Mm7|chr18 (56884208-56884689) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-266, gnl|bosTau2|chr7 (23295765-23296027) | |
| 1-266, gnl|canFam2|chr11 (18719422-18720167) | |
| 1-266, gnl|echTel1|scaffold_324024 (2914-2153) | |
| 1-266, gnl|hg17|chr5 (125786546-125787298) | |
| 1-266, gnl|Hg17|chr5 (125787007-125787285) | |
| 1-266, gnl|loxAfr1|scaffold_7092 (15844-16596) | |
| 1-266, gnl|mm7|chr18 (56813297-56813996) | |
| 1-266, gnl|Mm7|chr18 (56813761-56813984) | |
| 1-266, gnl|monDom2|scaffold_60 (187481-186683) | |
| 1-266, gnl|panTro1|chr4 (132113153-132113905) | |
| 1-266, gnl|rheMac2|chr6 (122808946-122809683) | |
| 1-266, gnl|rn3|chr18 (52247347-52248059) | |
| 373-494, gnl|bosTau2|chr7 (23492812-23492691) | |
| 373-494, gnl|canFam2|chr11 (18766051-18766179) | |
| 373-494, gnl|dasNov1|scaffold_71210 (9700-9572) | |
| 373-494, gnl|echTel1|scaffold_324337 (7430-7302) | |
| 373-494, gnl|galGal2|chrUn (3081518-3081414) | |
| 373-494, gnl|hg17|chr5 (125833255-125833383) | |
| 373-494, gnl|Hg17|chr5 (125833259-125833380) | |
| 373-494, gnl|loxAfr1|scaffold_3696 (122169-122038) | |
| 373-494, gnl|mm7|chr18 (56855629-56855757) | |
| 373-494, gnl|Mm7|chr18 (56855633-56855754) | |
| 373-494, gnl|monDom2|scaffold_60 (164310-164179) | |
| 373-494, gnl|oryCun1|scaffold_211207 (135774-135903) | |
| 373-494, gnl|panTro1|chr4 (132159878-132160006) | |
| 373-494, gnl|rheMac2|chr6 (122852234-122852362) | |
| 373-494, gnl|rn3|chr18 (52288551-52288679) | |
| 561-664, gnl|bosTau2|chr7 (23489227-23489124) | |
| 561-664, gnl|Hg17|chr5 (125836856-125836959) | |
| 561-664, gnl|Mm7|chr18 (56860472-56860575) | |
| 1024-1150, gnl|bosTau2|chr7 (23479593-23479467) | |
| 1024-1150, gnl|canFam2|chr11 (18780475-18780611) | |
| 1024-1150, gnl|dasNov1|scaffold_4791 (43191-43327) | |
| 1024-1150, gnl|echTel1|scaffold_312897 (54225-54088) | |
| 1024-1150, gnl|galGal2|chrUn (3072606-3072470) | |
| 1024-1150, gnl|hg17|chr5 (125847987-125848123) | |
| 1024-1150, gnl|Hg17|chr5 (125847991-125848117) | |
| 1024-1150, gnl|loxAfr1|scaffold_3696 (105224-105088) | |
| 1024-1150, gnl|mm7|chr18 (56871232-56871368) | |
| 1024-1150, gnl|Mm7|chr18 (56871236-56871362) | |
| 1024-1150, gnl|monDom2|scaffold_60 (142669-142533) | |
| 1024-1150, gnl|oryCun1|scaffold_170866 (24305-24169) | |
| 1024-1150, gnl|panTro1|chr4 (132174449-132174585) | |
| 1024-1150, gnl|rheMac2|chr6 (122867425-122867561) | |
| 1024-1150, gnl|rn3|chr18 (52302918-52303054) | |
| 1237-1357, gnl|bosTau2|chr7 (23476220-23476099) | |
| 1237-1357, gnl|Hg17|chr5 (125850464-125850585) | |
| 1237-1357, gnl|Mm7|chr18 (56873518-56873636) | |
| 1433-1955, gnl|bosTau2|chr7 (23467221-23466724) | |
| 1433-1955, gnl|Hg17|chr5 (125856503-125856999) | |
| 1433-1955, gnl|Mm7|chr18 (56884208-56884689) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ton (0.1755) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| cty (0.10408) |