Ss1.1-Tra1-TCH01B100100.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACTCGGGGAAGATGGCCGCGCTAACAGCGGAGAACTTTGCGGCTCTCCAGAGCCTGTT GAAGGCCTCCTCAAAAGATGTTGTCAGACAGCTGTGCCAAGAGAGCTTTTCCAGTTCAGC CGTTGGCTCGAAAAAACTCTTGGATATAACGTGTTCCAGCTTGTCCGTGACCCAGGAGGA GGCAGAACAACTGCTCCAGGCTCTGCACCGCCTCACCAGGGTGGCAGTCTTCCGAGACCT GTCCTCTGCCGAGGCGATTCTGGCACTCTTTCCTGAAAATTTCCACCAGAACCTCAAAAA CCTGCTGACAAAAATCATCCTGGAACACGTGTCTACTTGGAGAGCTGAAGCCCAAGCAAA TCAGATCTCTCTGCCGCGCCTGGTCGACCTGGACTGGAGGGTGGACATCAAGACCTCCTC AGACAGCATCAGCCGCCTGGCCGTGCCCACCTGCCTGCTCCAGATGAAGATCCAGGAAGA CCCCAGTCTGTGTGGGGACAAGCCCTCTGTGTCAGCTGTCACCGTGGAGCTGAGTAAGGA GACGCTGGACACCATGCTGGATGGGCTGGGCCGCATCCGAGACCAGCTTTCTGCCGTGGC CAACAAGTGAGCCACTGCCCGGTTGCTCCTGGGCACCCACCTCCCAGCACATGGTAGCCA CCGCCACAGGCACCAGTGGGGACAAAGGAGGCTGCCACCCAGACGGCACAGTCGGACCAG AGGCAGCCAGGCCCCTACATGGATGTTCTCGCTTTTTCCCCTCTTCCCGAAGTTGGTGAG GCATAAGCTGCTCTCCTCCCAGGGCCCTGTGTGGTACCTGACTCCCAGCATGGCGGGGAG AAGGACCTTGCTTGGTCAGCTGCCTCTGGCTGGCTGATTGGAAAATTCAGGCCCAAATTG TGGAGCTCGTTTCCAGCTCTGAAGACCTCTGGGGAGTCAGGTGGCTGATGCCAGCCTGCT TCTCTATCAGCGAAGCCAGGCAGATCCCGCAGGGCAGGGCCACTCAAACTTACCTGCTGC AGCGTGCCCGTCCCACCCTGGTCCCCAGCCTTCGCGCTCCCTCATCCCGGCTGCGCCACC CTGCGGCGTAGGAAGTCTCACGTGGGAGCTGATCCCCTTCTTCATGGAGCCAGAGGGCCC TTCCTGGGTGTAAGGCAGCCAGTCAGGGTGAAGAAGTGGGAGTGACTGGAAATAAACAAC GGTTCTAACAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACTCGGGGAAGATGGCCGCGCTAACAGCGGAGAACTTTGCGGCTCTCCAGAGCCTGTT GAAGGCCTCCTCAAAAGATGTTGTCAGACAGCTGTGCCAAGAGAGCTTTTCCAGTTCAGC CGTTGGCTCGAAAAAACTCTTGGATATAACGTGTTCCAGCTTGTCCGTGACCCAGGAGGA GGCAGAACAACTGCTCCAGGCTCTGCACCGCCTCACCAGGGTGGCAGTCTTCCGAGACCT GTCCTCTGCCGAGGCGATTCTGGCACTCTTTCCTGAAAATTTCCACCAGAACCTCAAAAA CCTGCTGACAAAAATCATCCTGGAACACGTGTCTACTTGGAGAGCTGAAGCCCAAGCAAA TCAGATCTCTCTGCCGCGCCTGGTCGACCTGGACTGGAGGGTGGACATCAAGACCTCCTC AGACAGCATCAGCCGCCTGGCCGTGCCCACCTGCCTGCTCCAGATGAAGATCCAGGAAGA CCCCAGTCTGTGTGGGGACAAGCCCTCTGTGTCAGCTGTCACCGTGGAGCTGAGTAAGGA GACGCTGGACACCATGCTGGATGGGCTGGGCCGCATCCGAGACCAGCTTTCTGCCGTGGC CAACAAGTGAGCCACTGCCCGGTTGCTCCTGGGCACCCACCTCCCAGCACATGGTAGCCA CCGCCACAGGCACCAGTGGGGACAAAGGAGGCTGCCACCCAGACGGCACAGTCGGACCAG AGGCAGCCAGGCCCCTACATGGATGTTCTCGCTTTTTCCCCTCTTCCCGAAGTTGGTGAG GCATAAGCTGCTCTCCTCCCAGGGCCCTGTGTGGTACCTGACTCCCAGCATGGCGGGGAG AAGGACCTTGCTTGGTCAGCTGCCTCTGGCTGGCTGATTGGAAAATTCAGGCCCAAATTG TGGAGCTCGTTTCCAGCTCTGAAGACCTCTGGGGAGTCAGGTGGCTGATGCCAGCCTGCT TCTCTATCAGCGAAGCCAGGCAGATCCCGCAGGGCAGGGCCACTCAAACTTACCTGCTGC AGCGTGCCCGTCCCACCCTGGTCCCCAGCCTTCGCGCTCCCTCATCCCGGCTGCGCCACC CTGCGGCGTAGGAAGTCTCACGTGGGAGCTGATCCCCTTCTTCATGGAGCCAGAGGGCCC TTCCTGGGTGTAAGGCAGCCAGTCAGGGTGAAGAAGTGGGAGTGACTGGAAATAAACAAC GGTTCTAACAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 188-306, - strand, RNAz p=0.596431 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 188-306, - strand, RNAz p=0.596431 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 188-332, gnl|bosTau2|chr15 (40652304-40652448) | |
| 188-332, gnl|canFam2|chr18 (34885965-34885782) | |
| 188-332, gnl|danRer3|chr17 (2815227-2815418) | |
| 188-332, gnl|dasNov1|scaffold_26816 (15286-15460) | |
| 188-332, gnl|echTel1|scaffold_309356 (51291-51481) | |
| 188-332, gnl|hg17|chr11 (36256573-36256764) | |
| 188-332, gnl|Hg17|chr11 (36256745-36256601) | |
| 188-332, gnl|loxAfr1|scaffold_10158 (15775-15971) | |
| 188-332, gnl|mm7|chr2 (101747926-101747735) | |
| 188-332, gnl|Mm7|chr2 (101747753-101747897) | |
| 188-332, gnl|monDom2|scaffold_33 (1485837-1486019) | |
| 188-332, gnl|oryCun1|scaffold_214500 (279457-279643) | |
| 188-332, gnl|panTro1|chr9 (36689960-36690151) | |
| 188-332, gnl|rheMac2|chr14 (35552833-35552641) | |
| 188-332, gnl|rn3|chr3 (86947712-86947521) | |
| 468-1208, gnl|bosTau2|chr15 (40656496-40657284) | |
| 468-1208, gnl|canFam2|chr18 (34890065-34889399) | |
| 468-1208, gnl|dasNov1|scaffold_26816 (6782-7423) | |
| 468-1208, gnl|echTel1|scaffold_309356 (46961-47536) | |
| 468-1208, gnl|hg17|chr11 (36252038-36252689) | |
| 468-1208, gnl|Hg17|chr11 (36252900-36252092) | |
| 468-1208, gnl|loxAfr1|scaffold_10158 (10619-11310) | |
| 468-1208, gnl|mm7|chr2 (101752411-101751830) | |
| 468-1208, gnl|Mm7|chr2 (101751642-101752354) | |
| 468-1208, gnl|monDom2|scaffold_33 (1482127-1482772) | |
| 468-1208, gnl|oryCun1|scaffold_214500 (274374-274973) | |
| 468-1208, gnl|panTro1|chr9 (36685437-36686088) | |
| 468-1208, gnl|rheMac2|chr14 (35557292-35556643) | |
| 468-1208, gnl|rn3|chr3 (86952102-86951532) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-332, gnl|bosTau2|chr15 (40652304-40652448) | |
| 188-332, gnl|canFam2|chr18 (34885965-34885782) | |
| 188-332, gnl|danRer3|chr17 (2815227-2815418) | |
| 188-332, gnl|dasNov1|scaffold_26816 (15286-15460) | |
| 188-332, gnl|echTel1|scaffold_309356 (51291-51481) | |
| 188-332, gnl|hg17|chr11 (36256573-36256764) | |
| 188-332, gnl|Hg17|chr11 (36256745-36256601) | |
| 188-332, gnl|loxAfr1|scaffold_10158 (15775-15971) | |
| 188-332, gnl|mm7|chr2 (101747926-101747735) | |
| 188-332, gnl|Mm7|chr2 (101747753-101747897) | |
| 188-332, gnl|monDom2|scaffold_33 (1485837-1486019) | |
| 188-332, gnl|oryCun1|scaffold_214500 (279457-279643) | |
| 188-332, gnl|panTro1|chr9 (36689960-36690151) | |
| 188-332, gnl|rheMac2|chr14 (35552833-35552641) | |
| 188-332, gnl|rn3|chr3 (86947712-86947521) | |
| 468-1208, gnl|bosTau2|chr15 (40656496-40657284) | |
| 468-1208, gnl|canFam2|chr18 (34890065-34889399) | |
| 468-1208, gnl|dasNov1|scaffold_26816 (6782-7423) | |
| 468-1208, gnl|echTel1|scaffold_309356 (46961-47536) | |
| 468-1208, gnl|hg17|chr11 (36252038-36252689) | |
| 468-1208, gnl|Hg17|chr11 (36252900-36252092) | |
| 468-1208, gnl|loxAfr1|scaffold_10158 (10619-11310) | |
| 468-1208, gnl|mm7|chr2 (101752411-101751830) | |
| 468-1208, gnl|Mm7|chr2 (101751642-101752354) | |
| 468-1208, gnl|monDom2|scaffold_33 (1482127-1482772) | |
| 468-1208, gnl|oryCun1|scaffold_214500 (274374-274973) | |
| 468-1208, gnl|panTro1|chr9 (36685437-36686088) | |
| 468-1208, gnl|rheMac2|chr14 (35557292-35556643) | |
| 468-1208, gnl|rn3|chr3 (86952102-86951532) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| col (0.390016) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| jej (0.197844) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ese (0.126502) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.390016) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| jej (0.197844) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ese (0.126502) | |
| jca (0.11396) | |
| cty (0.10408) |