Non-Coding RNA Search

Ss1.1-Tra1-TCH01B110009.5

Sequence:


               
               CTTGCAGTTGAGATAATCTGGGTTCTCCACAAGGCCTTCTTCACCCCCTGATAGAAGTAA
GGCCCTTAGGAGTCTTTTAACCTCTTTAGGACATAGGCCTCCTTATTCCTCAAGTTCACT
CAACAGCCTGAAATGACATAGGTACAGCACTTGGTCATTCATTCAACTAGTAATTCAGAG
TCTCTGCTCTCTGTGTGAGGAGCTTGGGCAGGAATAAACAGCCAGGACACAGCTCTCTCC
TACTGGGGTTTCAGGGAGAAGAACATTCACCTCGAACTTGGGGAGCTCTCAGTGTCAGCA
GCTCTGAGGTGCTTCTTACCCATCTTTTCTCACCTGGAACCCGATGACCGTTCCCCCAAA
CCTGCCCTGTTCCCAAGACCTGATTTATAAAACAAAGCATTCTCTCTTATAAAACTCAGG
ATTCCACTGCTTTGATTCACACCAAGTTTTCTAACAGTGCAGATGTCCACATAGATATAA
ATACTTATCTGATCTGTGCCATATTCTTTGACCTCACGAAATCTAGTTACCCTTCCTTCA
CCCACCTAAGCCTTCTTTTCCTATTTATAATTTGTGGTCAAATTGGGTCCTGCCATCTAG
GACTGAGGCCACATGGAAAGATGCCCCACTTTATTCACATGTACTCTTGGGGCAAGGGGA
GATATCCTCAGAGCTCACCTTGAACTTCAGGTGTGTCTAGAATTCTGTTTTCATCCTTTT
TTTGGGAAGCTTCCTCTGTCTTTATTAGCCAGTTAGGGGTTCCTGGGGCTGGAGAATCGT
AGGGGGCACACAGAATGCTCTTTGCAGCTCCCAATTCAGAACACAAGAGCCTGTGAAAGC
TTTAGTAATAGCAGAAGGTGACAATCCCCCAGATGCTCATGTGGGCCAGCCAGCTCCCAG
GCCTGCTCCTTTCCCTTAACCTCGAGGCCCCCTTCCCTCCAGCACACACCAGTGCTGAAG
TGATGTGGTTGTCCAAGGAGTGCACACAGCCCTTCTCCATATTACCCTTAATTCTTGAAT
AGGAATTTTAATTCTCATGTTAAAACTCATTCTTTATGTATCTTGTTCAGAAATTAACAC
ATTTCATCAAAACTAAGGCTCCATCAGCTTATTATTATCTTTTTTTAAGAAACGTTTGTT
TTCTCTCAACCTTATATCCATTTTCTGTTGCCACTGATTTTTTTTAAGAAGCAACATTTA
AAATGCATGTTGAGATGGACTGGGAGTTTGGGGTTAGTAGATGCAAACTATTGCATTTGG
AATGAATAAGCTATGAGATCCTGCTGTATAGCCCAAGGAAATATATCCGATCACTTGGGT
TAGAACATGATGGAGGATAATGTGGAAAAAAAAGAA------------------------
------------------------------------------------------------
------------------------------------TATAGGTTGCAGACGTGCTCAAAT
CCCATGTTGCTATGGCTGTGGTGTAAACCAGCAGCTGTAGATCCAATTGGACTCCTGGGA
TTAGGAACTTCCATATGCCCCAGGCACGACCCTAAAAAGCAAAAAAAAAAAAAAAAAAGG
TACCTATATGTATAGCGGGGTCCCTTTGCTGTACAGCAGAAATTGATAGAACATTGTAAA
TCAACTGTAATAAAAAATTTAAAACATAAAATGCATATTGAGGAAAGAAAAATGCTGTTA
ACTAAAACGAGACGTCATCAATCATAAGGTATTGTCTGATTGCAGCTGTGTTAAAAAGCA
GAAAGAAAACAGTGTGCTTCCGCCCTCCGGCTCCCCACCAATAGCTTCTTAGAATCAATA
AAATCTGGGTCAGGACTGATTAGATTTCACTTTCCCTCTGACAGAGCTACTTAGGTTGTT
AAAATAGCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCAGTTGAGATAATCTGGGTTCTCCACAAGGCCTTCTTCACCCCCTGATAGAAGTAA
GGCCCTTAGGAGTCTTTTAACCTCTTTAGGACATAGGCCTCCTTATTCCTCAAGTTCACT
CAACAGCCTGAAATGACATAGGTACAGCACTTGGTCATTCATTCAACTAGTAATTCAGAG
TCTCTGCTCTCTGTGTGAGGAGCTTGGGCAGGAATAAACAGCCAGGACACAGCTCTCTCC
TACTGGGGTTTCAGGGAGAAGAACATTCACCTCGAACTTGGGGAGCTCTCAGTGTCAGCA
GCTCTGAGGTGCTTCTTACCCATCTTTTCTCACCTGGAACCCGATGACCGTTCCCCCAAA
CCTGCCCTGTTCCCAAGACCTGATTTATAAAACAAAGCATTCTCTCTTATAAAACTCAGG
ATTCCACTGCTTTGATTCACACCAAGTTTTCTAACAGTGCAGATGTCCACATAGATATAA
ATACTTATCTGATCTGTGCCATATTCTTTGACCTCACGAAATCTAGTTACCCTTCCTTCA
CCCACCTAAGCCTTCTTTTCCTATTTATAATTTGTGGTCAAATTGGGTCCTGCCATCTAG
GACTGAGGCCACATGGAAAGATGCCCCACTTTATTCACATGTACTCTTGGGGCAAGGGGA
GATATCCTCAGAGCTCACCTTGAACTTCAGGTGTGTCTAGAATTCTGTTTTCATCCTTTT
TTTGGGAAGCTTCCTCTGTCTTTATTAGCCAGTTAGGGGTTCCTGGGGCTGGAGAATCGT
AGGGGGCACACAGAATGCTCTTTGCAGCTCCCAATTCAGAACACAAGAGCCTGTGAAAGC
TTTAGTAATAGCAGAAGGTGACAATCCCCCAGATGCTCATGTGGGCCAGCCAGCTCCCAG
GCCTGCTCCTTTCCCTTAACCTCGAGGCCCCCTTCCCTCCAGCACACACCAGTGCTGAAG
TGATGTGGTTGTCCAAGGAGTGCACACAGCCCTTCTCCATATTACCCTTAATTCTTGAAT
AGGAATTTTAATTCTCATGTTAAAACTCATTCTTTATGTATCTTGTTCAGAAATTAACAC
ATTTCATCAAAACTAAGGCTCCATCAGCTTATTATTATCTTTTTTTAAGAAACGTTTGTT
TTCTCTCAACCTTATATCCATTTTCTGTTGCCACTGATTTTTTTTAAGAAGCAACATTTA
AAATGCATGTTGAGATGGACTGGGAGTTTGGGGTTAGTAGATGCAAACTATTGCATTTGG
AATGAATAAGCTATGAGATCCTGCTGTATAGCCCAAGGAAATATATCCGATCACTTGGGT
TAGAACATGATGGAGGATAATGTGGAAAAAAAAGAA------------------------
------------------------------------------------------------
------------------------------------TATAGGTTGCAGACGTGCTCAAAT
CCCATGTTGCTATGGCTGTGGTGTAAACCAGCAGCTGTAGATCCAATTGGACTCCTGGGA
TTAGGAACTTCCATATGCCCCAGGCACGACCCTAAAAAGCAAAAAAAAAAAAAAAAAAGG
TACCTATATGTATAGCGGGGTCCCTTTGCTGTACAGCAGAAATTGATAGAACATTGTAAA
TCAACTGTAATAAAAAATTTAAAACATAAAATGCATATTGAGGAAAGAAAAATGCTGTTA
ACTAAAACGAGACGTCATCAATCATAAGGTATTGTCTGATTGCAGCTGTGTTAAAAAGCA
GAAAGAAAACAGTGTGCTTCCGCCCTCCGGCTCCCCACCAATAGCTTCTTAGAATCAATA
AAATCTGGGTCAGGACTGATTAGATTTCACTTTCCCTCTGACAGAGCTACTTAGGTTGTT
AAAATAGCCAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1123-1214, - strand, RNAz p=0.679263

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1123-1214, - strand, RNAz p=0.679263

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-341, gnl|bosTau2|chr10 (38135342-38134992)
               

               
               1-341, gnl|Hg17|chr15 (57404367-57404010)
               


               
               472-866, gnl|bosTau2|chr10 (38134230-38133833)
               


               
               1003-1214, gnl|bosTau2|chr10 (38131574-38131377)
               

               
               1003-1214, gnl|Hg17|chr15 (57402858-57402342)
               

               
               1003-1214, gnl|Mm7|chr9 (70279059-70279234)
               


               
               1587-1812, gnl|bosTau2|chr10 (38131392-38131161)
               

               
               1587-1812, gnl|Hg17|chr15 (57402357-57402122)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-341, gnl|bosTau2|chr10 (38135342-38134992)
               

               
               1-341, gnl|Hg17|chr15 (57404367-57404010)
               


               
               472-866, gnl|bosTau2|chr10 (38134230-38133833)
               


               
               1003-1214, gnl|bosTau2|chr10 (38131574-38131377)
               

               
               1003-1214, gnl|Hg17|chr15 (57402858-57402342)
               

               
               1003-1214, gnl|Mm7|chr9 (70279059-70279234)
               


               
               1587-1812, gnl|bosTau2|chr10 (38131392-38131161)
               

               
               1587-1812, gnl|Hg17|chr15 (57402357-57402122)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               gul (0.177588)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	1-341, gnl\|bosTau2\|chr10 (38135342-38134992)
	1-341, gnl\|Hg17\|chr15 (57404367-57404010)

	472-866, gnl\|bosTau2\|chr10 (38134230-38133833)

	1003-1214, gnl\|bosTau2\|chr10 (38131574-38131377)
	1003-1214, gnl\|Hg17\|chr15 (57402858-57402342)
	1003-1214, gnl\|Mm7\|chr9 (70279059-70279234)

	1587-1812, gnl\|bosTau2\|chr10 (38131392-38131161)
	1587-1812, gnl\|Hg17\|chr15 (57402357-57402122)