Non-Coding RNA Search

Ss1.1-Tra1-TCH01B110062.5

Sequence:


               
               GCACTTACAGGTGGGTGGCTGCTTTTGCTAAGTCATCCTGGGGATGCTCAAAGCCCCACT
GTGAAATTCTTCCTGGCTCCTCCTTCCTCATTCCCACTTTAATAGACCCTCAGGTACGCT
CACACCACTCTGCCACTCACTCTGCACTTCCACCATGGCTTACATTGCCAAGTCCTTCTA
CGACCTCAGTGCTATCAGCCTGGACGGGGAGAAGGTAGATTTCAACACATTCCGAGGCAG
GGCAGTGCTGATTGAGAATGTGGCCTCGCTCTGAGGCACAACCACCCGGGACTTCACCCA
ACTCAACGAGCTGCAATGCCGCTTTCCCAGGCGCCTGGTGGTTCTTGGCTTCCCTTGCAA
CCAATTTGGACATCAGGAGAACTGTCAGAATGAGGAGATCCTGAACAGCCTCAAGTACGT
CCGCCCTGGGGGTGGATTCCAGCCCACCTTTACCCTTATCCAGAAGTGTGACGTGAATGG
TCAGAATGAGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTGCCCTACCCTTATGACGA
CCCGTTTTCCCTCATGACTGATCCCAAGTTCATCATCTGGAGCCCTGTGCGCCGCTCAGA
TGTGTCCTGGAACTTTGAGAAGTTCCTCATCGGGCCAGAGGGGGAGCCCTTCCGACGCTA
CAGCCGCACCTTCCCCACCATCAACATCGAGCCTGACATCAAGCGCCTCCTCAAAGTTGC
CATATAAACACTGGCCGCTCAGCACACAGATCTCCTACTTCCTCCTGCCCCTGAGTATCC
ATCCTTAGCATTCAGTGTGCCCTCAGAACACTGAGCTGGACCCAGGCTTTCCCTTGAGAT
CCGTCCCCTTCATCAAAGAACCTTGCCTTTCTGGTCTGTTTCCTTCCCATCCCTCCAACC
TTCTTGTTGGTGATTCAACCCGGGGACTCTGAGACCTGGGTGGGCTCTGGGCTGTCACAG
AATGATGGCACCTTCCTAAATCCATATGGGAGGTGTTTGAGAAGTGTGAGGGGCCTGGAG
CCAGCCTGCCAGCTGAGTCCAATAAAGGGTGGGTGTGGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTTACAGGTGGGTGGCTGCTTTTGCTAAGTCATCCTGGGGATGCTCAAAGCCCCACT
GTGAAATTCTTCCTGGCTCCTCCTTCCTCATTCCCACTTTAATAGACCCTCAGGTACGCT
CACACCACTCTGCCACTCACTCTGCACTTCCACCATGGCTTACATTGCCAAGTCCTTCTA
CGACCTCAGTGCTATCAGCCTGGACGGGGAGAAGGTAGATTTCAACACATTCCGAGGCAG
GGCAGTGCTGATTGAGAATGTGGCCTCGCTCTGAGGCACAACCACCCGGGACTTCACCCA
ACTCAACGAGCTGCAATGCCGCTTTCCCAGGCGCCTGGTGGTTCTTGGCTTCCCTTGCAA
CCAATTTGGACATCAGGAGAACTGTCAGAATGAGGAGATCCTGAACAGCCTCAAGTACGT
CCGCCCTGGGGGTGGATTCCAGCCCACCTTTACCCTTATCCAGAAGTGTGACGTGAATGG
TCAGAATGAGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTGCCCTACCCTTATGACGA
CCCGTTTTCCCTCATGACTGATCCCAAGTTCATCATCTGGAGCCCTGTGCGCCGCTCAGA
TGTGTCCTGGAACTTTGAGAAGTTCCTCATCGGGCCAGAGGGGGAGCCCTTCCGACGCTA
CAGCCGCACCTTCCCCACCATCAACATCGAGCCTGACATCAAGCGCCTCCTCAAAGTTGC
CATATAAACACTGGCCGCTCAGCACACAGATCTCCTACTTCCTCCTGCCCCTGAGTATCC
ATCCTTAGCATTCAGTGTGCCCTCAGAACACTGAGCTGGACCCAGGCTTTCCCTTGAGAT
CCGTCCCCTTCATCAAAGAACCTTGCCTTTCTGGTCTGTTTCCTTCCCATCCCTCCAACC
TTCTTGTTGGTGATTCAACCCGGGGACTCTGAGACCTGGGTGGGCTCTGGGCTGTCACAG
AATGATGGCACCTTCCTAAATCCATATGGGAGGTGTTTGAGAAGTGTGAGGGGCCTGGAG
CCAGCCTGCCAGCTGAGTCCAATAAAGGGTGGGTGTGGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|579930|emb|CAA48394.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|579930|emb|CAA48394.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               930-1061, + strand, RNAz p=0.999432

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               930-1061, + strand, RNAz p=0.999432

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               374-1061, gnl|bosTau2|chr10 (52379473-52378803)
               

               
               374-1061, gnl|Hg17|chr14 (64476312-64475629)
               

               
               374-1061, gnl|Mm7|chr12 (74751688-74751022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               374-1061, gnl|bosTau2|chr10 (52379473-52378803)
               

               
               374-1061, gnl|Hg17|chr14 (64476312-64475629)
               

               
               374-1061, gnl|Mm7|chr12 (74751688-74751022)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               col (7.21529)
               

               
               nco (1.94081)
               

               
               ton (0.526501)
               

               
               nmm (0.265604)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (7.21529)
               

               
               nco (1.94081)
               

               
               ton (0.526501)
               

               
               nmm (0.265604)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	374-1061, gnl\|bosTau2\|chr10 (52379473-52378803)
	374-1061, gnl\|Hg17\|chr14 (64476312-64475629)
	374-1061, gnl\|Mm7\|chr12 (74751688-74751022)

	col (7.21529)
	nco (1.94081)
	ton (0.526501)
	nmm (0.265604)
	mas (0.210305)
	nlu (0.191681)
	ill (0.175593)
	duo (0.172801)
	cov (0.132153)
	jej (0.0989218)