Non-Coding RNA Search

Ss1.1-Tra1-TCH01B110086.5

Sequence:


               
               GTCTTGGGTTCCTGGGTGACCCGGCAGGATGGTGGCTTCATGTGTTCCCTTAACTACCTG
CCAGGGCTAGTCTCCAGGGAGCACCAGCTATTCCCCAGAGCTGCGGGTGAGCAGTCGGGC
TTTTCCTCATCCAAGCTGCAGAACGCCCCGTCTGTGTCGTCCCGCCCGGCAGAGGTGGGA
CCGGGAGGAGTCTGTCTCTGCGGCTTGGGTGTCTTGGTCTCCCCCCAGCACGTGCACGCA
CTGCTTGGAGTGCTCTGATCTTAAGGTTCTTCCTGATTCCTGGGATGTAAGACAAGTGAA
TCCTATCCTGAGCCATTACAGTCTAAGATGTCCACCAAGTTGAGAGAAGGTGCAGCTTTG
ACTCCTGTGGTCTACACTCGAGAGGAGCAAGAGGGTCTGAGAATAGTAAAGGTAGAGGAA
GAAGAGGACCATGCTTGGGAGCAGAAGCCTGGACAGCTAGAGAATGTGTATCCATATCAG
GAACTCTTCCGCCAGTGCTTCAGGCAGTTCCGTTACCAGGAGGCCCCTGGACCTCGAGAG
GCTCTAAGCCGGCTCCAGGAGCTCTGCCAAAAGTGGCTGCAGCCTGAGATACACAGCAAG
GAGCAGATCCTGGAGCTCCTGGTGCTGGAGCAGTTCCTGACCATCCTCCCCGAGGGCCTT
CGGGCCCAGGTACTGGGATATCATCCAAGGAGCGGAGAGGAAGTGGTGACTATGCTGGAA
AATCTGGAGACAGAACTTGGAGACAAAGGACAACAGGTCCAAGCCACTGCATACTACAAA
CAAGAAGTACCTTGGAAAGAAGTAGGACCTGTAAGCCTCACAGATCAGTCACTGACCGTC
CAGCTAAAGTGTTAATTTCTTGGCTGAAGCATTGTCTTTTTTTTTTTTTTTTAAGGTTCT
GCTGCTTTTGTCAATTGATTAAGACACTGGTTTCTTCATCATTCTGCTTCCTATACCCAT
AGGAAATTTTCTTTTAAATCAGACTTTGAGGTTTTAATTAGCTATTGCCATGTTTCTGAC
CCTCCTATAAATTCAGCTCTACTTGTATGTCCTCAGGTCCAAGCCACTGCATACTACAAA
CAGGAAGTACCTTGGAAAGAAGTAGGACCTGTAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTGGGTTCCTGGGTGACCCGGCAGGATGGTGGCTTCATGTGTTCCCTTAACTACCTG
CCAGGGCTAGTCTCCAGGGAGCACCAGCTATTCCCCAGAGCTGCGGGTGAGCAGTCGGGC
TTTTCCTCATCCAAGCTGCAGAACGCCCCGTCTGTGTCGTCCCGCCCGGCAGAGGTGGGA
CCGGGAGGAGTCTGTCTCTGCGGCTTGGGTGTCTTGGTCTCCCCCCAGCACGTGCACGCA
CTGCTTGGAGTGCTCTGATCTTAAGGTTCTTCCTGATTCCTGGGATGTAAGACAAGTGAA
TCCTATCCTGAGCCATTACAGTCTAAGATGTCCACCAAGTTGAGAGAAGGTGCAGCTTTG
ACTCCTGTGGTCTACACTCGAGAGGAGCAAGAGGGTCTGAGAATAGTAAAGGTAGAGGAA
GAAGAGGACCATGCTTGGGAGCAGAAGCCTGGACAGCTAGAGAATGTGTATCCATATCAG
GAACTCTTCCGCCAGTGCTTCAGGCAGTTCCGTTACCAGGAGGCCCCTGGACCTCGAGAG
GCTCTAAGCCGGCTCCAGGAGCTCTGCCAAAAGTGGCTGCAGCCTGAGATACACAGCAAG
GAGCAGATCCTGGAGCTCCTGGTGCTGGAGCAGTTCCTGACCATCCTCCCCGAGGGCCTT
CGGGCCCAGGTACTGGGATATCATCCAAGGAGCGGAGAGGAAGTGGTGACTATGCTGGAA
AATCTGGAGACAGAACTTGGAGACAAAGGACAACAGGTCCAAGCCACTGCATACTACAAA
CAAGAAGTACCTTGGAAAGAAGTAGGACCTGTAAGCCTCACAGATCAGTCACTGACCGTC
CAGCTAAAGTGTTAATTTCTTGGCTGAAGCATTGTCTTTTTTTTTTTTTTTTAAGGTTCT
GCTGCTTTTGTCAATTGATTAAGACACTGGTTTCTTCATCATTCTGCTTCCTATACCCAT
AGGAAATTTTCTTTTAAATCAGACTTTGAGGTTTTAATTAGCTATTGCCATGTTTCTGAC
CCTCCTATAAATTCAGCTCTACTTGTATGTCCTCAGGTCCAAGCCACTGCATACTACAAA
CAGGAAGTACCTTGGAAAGAAGTAGGACCTGTAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15020829|emb|CAC44641.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15020829|emb|CAC44641.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               516-635, + strand, RNAz p=0.755018

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               516-635, + strand, RNAz p=0.755018

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               247-758, gnl|bosTau2|chr23 (24538932-24538421)
               

               
               247-758, gnl|Hg17|chr6 (28662506-28662052)
               

               
               247-758, gnl|Mm7|chr13 (20892949-20892506)
               


               
               477-737, gnl|bosTau2|chr19 (14951300-14951040)
               

               
               477-737, gnl|Hg17|chr17 (4953689-4953429)
               

               
               477-737, gnl|Mm7|chr5 (137070875-137071135)
               


               
               478-667, gnl|bosTau2|chr13 (46206182-46206370)
               

               
               478-667, gnl|canFam2|chr24 (27793270-27793767)
               

               
               478-667, gnl|dasNov1|scaffold_2507 (103656-104125)
               

               
               478-667, gnl|echTel1|scaffold_309798 (84835-85263)
               

               
               478-667, gnl|hg17|chr20 (34005015-34005511)
               

               
               478-667, gnl|Hg17|chr20 (34005310-34005122)
               

               
               478-667, gnl|loxAfr1|scaffold_29083 (12644-13151)
               

               
               478-667, gnl|mm7|chr2 (156052753-156053103)
               

               
               478-667, gnl|Mm7|chr2 (156053007-156052819)
               

               
               478-667, gnl|monDom2|scaffold_6 (11109423-11108930)
               

               
               478-667, gnl|oryCun1|scaffold_143027 (25188-24754)
               

               
               478-667, gnl|panTro1|chr21 (36225996-36226492)
               

               
               478-667, gnl|rheMac2|chr10 (28569615-28569119)
               

               
               478-667, gnl|rn3|chr3 (146616106-146616456)
               


               
               916-1116, gnl|bosTau2|chr23 (24538271-24538075)
               

               
               916-1116, gnl|Hg17|chr18 (31076994-31077154)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-758, gnl|bosTau2|chr23 (24538932-24538421)
               

               
               247-758, gnl|Hg17|chr6 (28662506-28662052)
               

               
               247-758, gnl|Mm7|chr13 (20892949-20892506)
               


               
               477-737, gnl|bosTau2|chr19 (14951300-14951040)
               

               
               477-737, gnl|Hg17|chr17 (4953689-4953429)
               

               
               477-737, gnl|Mm7|chr5 (137070875-137071135)
               


               
               478-667, gnl|bosTau2|chr13 (46206182-46206370)
               

               
               478-667, gnl|canFam2|chr24 (27793270-27793767)
               

               
               478-667, gnl|dasNov1|scaffold_2507 (103656-104125)
               

               
               478-667, gnl|echTel1|scaffold_309798 (84835-85263)
               

               
               478-667, gnl|hg17|chr20 (34005015-34005511)
               

               
               478-667, gnl|Hg17|chr20 (34005310-34005122)
               

               
               478-667, gnl|loxAfr1|scaffold_29083 (12644-13151)
               

               
               478-667, gnl|mm7|chr2 (156052753-156053103)
               

               
               478-667, gnl|Mm7|chr2 (156053007-156052819)
               

               
               478-667, gnl|monDom2|scaffold_6 (11109423-11108930)
               

               
               478-667, gnl|oryCun1|scaffold_143027 (25188-24754)
               

               
               478-667, gnl|panTro1|chr21 (36225996-36226492)
               

               
               478-667, gnl|rheMac2|chr10 (28569615-28569119)
               

               
               478-667, gnl|rn3|chr3 (146616106-146616456)
               


               
               916-1116, gnl|bosTau2|chr23 (24538271-24538075)
               

               
               916-1116, gnl|Hg17|chr18 (31076994-31077154)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	247-758, gnl\|bosTau2\|chr23 (24538932-24538421)
	247-758, gnl\|Hg17\|chr6 (28662506-28662052)
	247-758, gnl\|Mm7\|chr13 (20892949-20892506)

	477-737, gnl\|bosTau2\|chr19 (14951300-14951040)
	477-737, gnl\|Hg17\|chr17 (4953689-4953429)
	477-737, gnl\|Mm7\|chr5 (137070875-137071135)

	478-667, gnl\|bosTau2\|chr13 (46206182-46206370)
	478-667, gnl\|canFam2\|chr24 (27793270-27793767)
	478-667, gnl\|dasNov1\|scaffold_2507 (103656-104125)
	478-667, gnl\|echTel1\|scaffold_309798 (84835-85263)
	478-667, gnl\|hg17\|chr20 (34005015-34005511)
	478-667, gnl\|Hg17\|chr20 (34005310-34005122)
	478-667, gnl\|loxAfr1\|scaffold_29083 (12644-13151)
	478-667, gnl\|mm7\|chr2 (156052753-156053103)
	478-667, gnl\|Mm7\|chr2 (156053007-156052819)
	478-667, gnl\|monDom2\|scaffold_6 (11109423-11108930)
	478-667, gnl\|oryCun1\|scaffold_143027 (25188-24754)
	478-667, gnl\|panTro1\|chr21 (36225996-36226492)
	478-667, gnl\|rheMac2\|chr10 (28569615-28569119)
	478-667, gnl\|rn3\|chr3 (146616106-146616456)

	916-1116, gnl\|bosTau2\|chr23 (24538271-24538075)
	916-1116, gnl\|Hg17\|chr18 (31076994-31077154)