Ss1.1-Tra1-TCH01B120028.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAGCTCAGCGAGGCGCCCTGGGGGACGCTGGCTCTGCCACGAGCTCTGGGATCGGGG TCTGCAGCCGGCCCCTTGCTGGCTGGTTCCCGGAGTGGAGCTCAGCGAGGCGCCCTGGGG GACGCTGGCTCTGCCACGAGCTCTGGGATCGGGGTCTGCAGCCGGCCCCTTGCTGGCTCT GTCTCCCAGGCGCAGGCAGATATTCGGCCGGGGATACTGAGCTTTGGCTACTCGCTTTGC CCGTGACACGATGGTCCCCGTCGACAGCTCCTGGAGGACTGGTCTGCCCCTGCTGCTGCT CCTGGCCGTGGCAGTGAGAGGGTCCTGGCAGGCAGAAGAAAAAACATGCGACCTGGTGGG AGAAAAGGGTAAAGAGTCCGAGAAAGAGTTGGCTCTACTGAAGAGGCTGAAACCACTGTT TAACAAAAGCTTTGAGAGCACCGTGGGCCAGGGCTCAGACACGTATATGTACATGTTCCG GGTGTGCCGAGAAGCTGGCAACCACAGCTCTGGGGCAGGCCTGGTGCAGATCAACAAAAG TAATGGGAAGGAGACAGTAGTGGGGAGACTCAACGAGACTCACGTCTTCAATGGAAGTAA TTGGATCATGCTCATCTATAAAGGGGGTGATGAATATGACAATCACTGTGGCAAGGAGCA GCGCCGGGCAGTGGTGATGATCTCCTGCAACCGACACACCCTAGCGGACAATTTCAACCC TGTGTCTGAGGAGCGAGGCAAAGTCCAAGACTGTTTCTACCTCTTTGAGATGGACAGCAG CCTGGCATGTTCCCCGGAGATCTCCCACCTCAGCGTGGGTTCTATCTTACTTGTTACGTT TGCATCACTGGTCGCTGTCTATATCATCGGGGGGTTCCTGTACCAGCGACTGGTGGTGGG AGCCAAAGGAATAGAGCAGTTTCCCCACTTAGCCTTCTGGCAGGATCTTGGCAACCTGGT CGCAGATGGTTGTGACTTTGTGTGCCGATCTAAACCCCGAAATGTGCCTGCTGCATACCG TGGTGTGGGGGATGACCAGCTGGGGGAGGAGTCAGAAGAAAGGGATGACCATTTATTACC GATGTGATTGCACTTTAAACGTCCAGCTTCTTCAGCCCCCAAACCAAAGCATCCTCAGCC AGATTTCTTAAGCAGTCTCCACTCCAGTCTCTCATCTTACCCTTAATATTGCTCTTGCTT TCCAGTTTGCTTTTGGTTTGCAGCCACTCACTCGTCAGTAGTAGAAATGCCTTTCCTTTG TTCCCTATTTTGTTTTCCCTCAAGGTACCCTTACAGGACAAAGATAATAGGGCCAGTGAC AGAGGCGGTTGCACTGTCTCTTAGTATCAGAAAGTACAAACAGGAGTTCTTCCAAGCAAA AGGGTGTGGCAGGCTCCCTGACCCTTTCTTTTTTAAACACATTTTCACAAGTTTTTGAGA CACTGGATTTCTTTAATTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAGCTCAGCGAGGCGCCCTGGGGGACGCTGGCTCTGCCACGAGCTCTGGGATCGGGG TCTGCAGCCGGCCCCTTGCTGGCTGGTTCCCGGAGTGGAGCTCAGCGAGGCGCCCTGGGG GACGCTGGCTCTGCCACGAGCTCTGGGATCGGGGTCTGCAGCCGGCCCCTTGCTGGCTCT GTCTCCCAGGCGCAGGCAGATATTCGGCCGGGGATACTGAGCTTTGGCTACTCGCTTTGC CCGTGACACGATGGTCCCCGTCGACAGCTCCTGGAGGACTGGTCTGCCCCTGCTGCTGCT CCTGGCCGTGGCAGTGAGAGGGTCCTGGCAGGCAGAAGAAAAAACATGCGACCTGGTGGG AGAAAAGGGTAAAGAGTCCGAGAAAGAGTTGGCTCTACTGAAGAGGCTGAAACCACTGTT TAACAAAAGCTTTGAGAGCACCGTGGGCCAGGGCTCAGACACGTATATGTACATGTTCCG GGTGTGCCGAGAAGCTGGCAACCACAGCTCTGGGGCAGGCCTGGTGCAGATCAACAAAAG TAATGGGAAGGAGACAGTAGTGGGGAGACTCAACGAGACTCACGTCTTCAATGGAAGTAA TTGGATCATGCTCATCTATAAAGGGGGTGATGAATATGACAATCACTGTGGCAAGGAGCA GCGCCGGGCAGTGGTGATGATCTCCTGCAACCGACACACCCTAGCGGACAATTTCAACCC TGTGTCTGAGGAGCGAGGCAAAGTCCAAGACTGTTTCTACCTCTTTGAGATGGACAGCAG CCTGGCATGTTCCCCGGAGATCTCCCACCTCAGCGTGGGTTCTATCTTACTTGTTACGTT TGCATCACTGGTCGCTGTCTATATCATCGGGGGGTTCCTGTACCAGCGACTGGTGGTGGG AGCCAAAGGAATAGAGCAGTTTCCCCACTTAGCCTTCTGGCAGGATCTTGGCAACCTGGT CGCAGATGGTTGTGACTTTGTGTGCCGATCTAAACCCCGAAATGTGCCTGCTGCATACCG TGGTGTGGGGGATGACCAGCTGGGGGAGGAGTCAGAAGAAAGGGATGACCATTTATTACC GATGTGATTGCACTTTAAACGTCCAGCTTCTTCAGCCCCCAAACCAAAGCATCCTCAGCC AGATTTCTTAAGCAGTCTCCACTCCAGTCTCTCATCTTACCCTTAATATTGCTCTTGCTT TCCAGTTTGCTTTTGGTTTGCAGCCACTCACTCGTCAGTAGTAGAAATGCCTTTCCTTTG TTCCCTATTTTGTTTTCCCTCAAGGTACCCTTACAGGACAAAGATAATAGGGCCAGTGAC AGAGGCGGTTGCACTGTCTCTTAGTATCAGAAAGTACAAACAGGAGTTCTTCCAAGCAAA AGGGTGTGGCAGGCTCCCTGACCCTTTCTTTTTTAAACACATTTTCACAAGTTTTTGAGA CACTGGATTTCTTTAATTAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 706-824, - strand, RNAz p=0.531184 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 706-824, - strand, RNAz p=0.531184 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 85-248, gnl|bosTau2|chr5 (59521912-59522075) | |
| 85-248, gnl|Hg17|chr12 (8993515-8993352) | |
| 85-248, gnl|Mm7|chr6 (122335090-122335259) | |
| 428-616, gnl|bosTau2|chr5 (59529964-59530153) | |
| 428-616, gnl|canFam2|chr27 (39818719-39818887) | |
| 428-616, gnl|dasNov1|scaffold_67408 (6607-6775) | |
| 428-616, gnl|echTel1|scaffold_172109 (2171-2008) | |
| 428-616, gnl|Hg17|chr12 (8989449-8989251) | |
| 428-616, gnl|hg17|chrX (109686389-109686551) | |
| 428-616, gnl|loxAfr1|scaffold_420 (45823-45655) | |
| 428-616, gnl|mm7|chr3 (99296163-99296331) | |
| 428-616, gnl|Mm7|chr6 (122339351-122339540) | |
| 428-616, gnl|monDom2|scaffold_31 (11832755-11832920) | |
| 428-616, gnl|oryCun1|scaffold_199071 (5844-5676) | |
| 428-616, gnl|panTro1|chrX (113410835-113410997) | |
| 428-616, gnl|rheMac2|chr11 (9093995-9093827) | |
| 428-616, gnl|rn3|chrX (105804331-105804499) | |
| 706-839, gnl|bosTau2|chr5 (59531674-59531807) | |
| 706-839, gnl|canFam2|chr27 (39820649-39820552) | |
| 706-839, gnl|canFam2|chr27 (39820511-39820602) | |
| 706-839, gnl|danRer3|chr16 (10646979-10647075) | |
| 706-839, gnl|dasNov1|scaffold_130754 (2178-2087) | |
| 706-839, gnl|dasNov1|scaffold_67408 (8427-8330) | |
| 706-839, gnl|echTel1|scaffold_172109 (1898-1818) | |
| 706-839, gnl|echTel1|scaffold_311219 (18611-18514) | |
| 706-839, gnl|galGal2|chr1 (68266208-68266111) | |
| 706-839, gnl|hg17|chr12 (8987262-8987359) | |
| 706-839, gnl|Hg17|chr12 (8987399-8987266) | |
| 706-839, gnl|hg17|chrX (109686669-109686760) | |
| 706-839, gnl|loxAfr1|scaffold_420 (44038-44135) | |
| 706-839, gnl|loxAfr1|scaffold_420 (44176-44085) | |
| 706-839, gnl|mm7|chr3 (99296437-99296528) | |
| 706-839, gnl|mm7|chr6 (122341536-122341439) | |
| 706-839, gnl|Mm7|chr6 (122341397-122341530) | |
| 706-839, gnl|monDom2|scaffold_31 (11834587-11834486) | |
| 706-839, gnl|monDom2|scaffold_31 (11834445-11834537) | |
| 706-839, gnl|oryCun1|scaffold_173376 (23297-23381) | |
| 706-839, gnl|oryCun1|scaffold_199071 (3662-3759) | |
| 706-839, gnl|panTro1|chrUn_random (58115566-58115469) | |
| 706-839, gnl|panTro1|chrX (113411115-113411206) | |
| 706-839, gnl|rheMac2|chr11 (9091554-9091651) | |
| 706-839, gnl|rheMac2|chr11 (9091692-9091601) | |
| 706-839, gnl|rn3|chr4 (158979238-158979141) | |
| 706-839, gnl|rn3|chrX (105804609-105804700) | |
| 706-839, gnl|xenTro1|scaffold_365 (327034-327131) | |
| 965-1473, gnl|bosTau2|chr5 (59532903-59533397) | |
| 965-1473, gnl|canFam2|chr27 (39822460-39821942) | |
| 965-1473, gnl|dasNov1|scaffold_130754 (1241-1769) | |
| 965-1473, gnl|echTel1|scaffold_172109 (999-1503) | |
| 965-1473, gnl|hg17|chr12 (8985122-8985637) | |
| 965-1473, gnl|Hg17|chr12 (8985803-8985284) | |
| 965-1473, gnl|loxAfr1|scaffold_420 (41976-42457) | |
| 965-1473, gnl|mm7|chr6 (122342971-122342587) | |
| 965-1473, gnl|Mm7|chr6 (122342422-122342873) | |
| 965-1473, gnl|monDom2|scaffold_31 (11836141-11835639) | |
| 965-1473, gnl|oryCun1|scaffold_199071 (932-1409) | |
| 965-1473, gnl|panTro1|chrUn_random (58117712-58117194) | |
| 965-1473, gnl|rheMac2|chr11 (9089432-9089946) | |
| 965-1473, gnl|rn3|chr4 (158980820-158980396) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 85-248, gnl|bosTau2|chr5 (59521912-59522075) | |
| 85-248, gnl|Hg17|chr12 (8993515-8993352) | |
| 85-248, gnl|Mm7|chr6 (122335090-122335259) | |
| 428-616, gnl|bosTau2|chr5 (59529964-59530153) | |
| 428-616, gnl|canFam2|chr27 (39818719-39818887) | |
| 428-616, gnl|dasNov1|scaffold_67408 (6607-6775) | |
| 428-616, gnl|echTel1|scaffold_172109 (2171-2008) | |
| 428-616, gnl|Hg17|chr12 (8989449-8989251) | |
| 428-616, gnl|hg17|chrX (109686389-109686551) | |
| 428-616, gnl|loxAfr1|scaffold_420 (45823-45655) | |
| 428-616, gnl|mm7|chr3 (99296163-99296331) | |
| 428-616, gnl|Mm7|chr6 (122339351-122339540) | |
| 428-616, gnl|monDom2|scaffold_31 (11832755-11832920) | |
| 428-616, gnl|oryCun1|scaffold_199071 (5844-5676) | |
| 428-616, gnl|panTro1|chrX (113410835-113410997) | |
| 428-616, gnl|rheMac2|chr11 (9093995-9093827) | |
| 428-616, gnl|rn3|chrX (105804331-105804499) | |
| 706-839, gnl|bosTau2|chr5 (59531674-59531807) | |
| 706-839, gnl|canFam2|chr27 (39820649-39820552) | |
| 706-839, gnl|canFam2|chr27 (39820511-39820602) | |
| 706-839, gnl|danRer3|chr16 (10646979-10647075) | |
| 706-839, gnl|dasNov1|scaffold_130754 (2178-2087) | |
| 706-839, gnl|dasNov1|scaffold_67408 (8427-8330) | |
| 706-839, gnl|echTel1|scaffold_172109 (1898-1818) | |
| 706-839, gnl|echTel1|scaffold_311219 (18611-18514) | |
| 706-839, gnl|galGal2|chr1 (68266208-68266111) | |
| 706-839, gnl|hg17|chr12 (8987262-8987359) | |
| 706-839, gnl|Hg17|chr12 (8987399-8987266) | |
| 706-839, gnl|hg17|chrX (109686669-109686760) | |
| 706-839, gnl|loxAfr1|scaffold_420 (44038-44135) | |
| 706-839, gnl|loxAfr1|scaffold_420 (44176-44085) | |
| 706-839, gnl|mm7|chr3 (99296437-99296528) | |
| 706-839, gnl|mm7|chr6 (122341536-122341439) | |
| 706-839, gnl|Mm7|chr6 (122341397-122341530) | |
| 706-839, gnl|monDom2|scaffold_31 (11834587-11834486) | |
| 706-839, gnl|monDom2|scaffold_31 (11834445-11834537) | |
| 706-839, gnl|oryCun1|scaffold_173376 (23297-23381) | |
| 706-839, gnl|oryCun1|scaffold_199071 (3662-3759) | |
| 706-839, gnl|panTro1|chrUn_random (58115566-58115469) | |
| 706-839, gnl|panTro1|chrX (113411115-113411206) | |
| 706-839, gnl|rheMac2|chr11 (9091554-9091651) | |
| 706-839, gnl|rheMac2|chr11 (9091692-9091601) | |
| 706-839, gnl|rn3|chr4 (158979238-158979141) | |
| 706-839, gnl|rn3|chrX (105804609-105804700) | |
| 706-839, gnl|xenTro1|scaffold_365 (327034-327131) | |
| 965-1473, gnl|bosTau2|chr5 (59532903-59533397) | |
| 965-1473, gnl|canFam2|chr27 (39822460-39821942) | |
| 965-1473, gnl|dasNov1|scaffold_130754 (1241-1769) | |
| 965-1473, gnl|echTel1|scaffold_172109 (999-1503) | |
| 965-1473, gnl|hg17|chr12 (8985122-8985637) | |
| 965-1473, gnl|Hg17|chr12 (8985803-8985284) | |
| 965-1473, gnl|loxAfr1|scaffold_420 (41976-42457) | |
| 965-1473, gnl|mm7|chr6 (122342971-122342587) | |
| 965-1473, gnl|Mm7|chr6 (122342422-122342873) | |
| 965-1473, gnl|monDom2|scaffold_31 (11836141-11835639) | |
| 965-1473, gnl|oryCun1|scaffold_199071 (932-1409) | |
| 965-1473, gnl|panTro1|chrUn_random (58117712-58117194) | |
| 965-1473, gnl|rheMac2|chr11 (9089432-9089946) | |
| 965-1473, gnl|rn3|chr4 (158980820-158980396) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| clu (0.358938) | |
| duo (0.345602) | |
| cly (0.241284) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fty (0.17584) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pla (0.133672) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ldo (0.0970026) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.358938) | |
| duo (0.345602) | |
| cly (0.241284) | |
| cty (0.20816) | |
| hea (0.204499) | |
| fty (0.17584) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cag (0.151194) | |
| pla (0.133672) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ldo (0.0970026) |