Non-Coding RNA Search

Ss1.1-Tra1-TCH01B120069.5

Sequence:


               
               AGAGTCCTTCAAATGACCATTACGCAGTACAAATCACCAATCCTAGCTAAGCAACCAGGT
CACCTGCAAAAGCAGCACCTCTGAAATGGAGAGCCTGCTGCATTCACACTCAAAGCACCC
ATCATATAAAAGTATCCTATTTAAATATAAAAAGCAAAGCTCATTTCCCCAAAGCTCTAA
CAGCCTGTGCTGCTCCTGCTCTTTTACAAAATCTACCCAAGGCCTGAGTTGGAGGAATGC
TGCTTTCCCCACATACGGTGATCCCAACTCCTGGCTCCATCGTGAAGGTCACAGAGTTGG
AAACCCAAGGTCCAAGGAGAGAAACATGCTGAGAAGCACACGGTGGTAGACATGAGGCTG
CAAGGAGCATTGTCAGAGCCCATCGGATCTTCCTAAATCCAGGGAATCAGGACCTGGGAG
GGGAGCCTGCCTGCTCGCCCCTGTTCCTTGGGAAACTGAAATCTGGGACACGTCTCTCCC
AATTATCTCGTTCACTGAAAAATAAGAAAGAGGAAAGTGATTAGTAACCTCTGTGTGACT
GACCATATGATGCTCAATTCCAAGCCCTACTTCAAAGACATTTTCCACCTTTCAGTGGCT
TTCTATAAAGGTAAGGGCAGGATTTGAGGCCTACTCTTCAACTGAATGGAAACATCATTC
CAGAAGTTGTTCCAGAATGCCCTTTCTTTCCCTTTCAGTTCAATTTTGATTGGGAAGGGG
AATGGCTGACAAAAAGGGAAACGTTCTTTTTTTTCTTATCTTTATGGCCGCACCTGCAGC
ATATGCAAGTTCCCAGGCCAGGGATTGAATCGGAGCTACAGCTACCGGCCTGCACCACAG
ACACAGCAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTCCTTCAAATGACCATTACGCAGTACAAATCACCAATCCTAGCTAAGCAACCAGGT
CACCTGCAAAAGCAGCACCTCTGAAATGGAGAGCCTGCTGCATTCACACTCAAAGCACCC
ATCATATAAAAGTATCCTATTTAAATATAAAAAGCAAAGCTCATTTCCCCAAAGCTCTAA
CAGCCTGTGCTGCTCCTGCTCTTTTACAAAATCTACCCAAGGCCTGAGTTGGAGGAATGC
TGCTTTCCCCACATACGGTGATCCCAACTCCTGGCTCCATCGTGAAGGTCACAGAGTTGG
AAACCCAAGGTCCAAGGAGAGAAACATGCTGAGAAGCACACGGTGGTAGACATGAGGCTG
CAAGGAGCATTGTCAGAGCCCATCGGATCTTCCTAAATCCAGGGAATCAGGACCTGGGAG
GGGAGCCTGCCTGCTCGCCCCTGTTCCTTGGGAAACTGAAATCTGGGACACGTCTCTCCC
AATTATCTCGTTCACTGAAAAATAAGAAAGAGGAAAGTGATTAGTAACCTCTGTGTGACT
GACCATATGATGCTCAATTCCAAGCCCTACTTCAAAGACATTTTCCACCTTTCAGTGGCT
TTCTATAAAGGTAAGGGCAGGATTTGAGGCCTACTCTTCAACTGAATGGAAACATCATTC
CAGAAGTTGTTCCAGAATGCCCTTTCTTTCCCTTTCAGTTCAATTTTGATTGGGAAGGGG
AATGGCTGACAAAAAGGGAAACGTTCTTTTTTTTCTTATCTTTATGGCCGCACCTGCAGC
ATATGCAAGTTCCCAGGCCAGGGATTGAATCGGAGCTACAGCTACCGGCCTGCACCACAG
ACACAGCAAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-253, - strand, RNAz p=0.81357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-253, - strand, RNAz p=0.81357

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               174-280, - strand, RNAmicro p=0.995221

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               174-280, - strand, RNAmicro p=0.995221

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_173163, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_173163, -

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-605, gnl|bosTau2|chr18 (14748664-14749268)
               

               
               1-605, gnl|Hg17|chr16 (66818246-66817648)
               

               
               1-605, gnl|Mm7|chr8 (104727262-104726679)
               


               
               625-746, gnl|bosTau2|chr18 (14749270-14749391)
               

               
               625-746, gnl|Mm7|chr8 (104726678-104726565)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-605, gnl|bosTau2|chr18 (14748664-14749268)
               

               
               1-605, gnl|Hg17|chr16 (66818246-66817648)
               

               
               1-605, gnl|Mm7|chr8 (104727262-104726679)
               


               
               625-746, gnl|bosTau2|chr18 (14749270-14749391)
               

               
               625-746, gnl|Mm7|chr8 (104726678-104726565)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (0.132784)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               cly (0.120642)

	1-605, gnl\|bosTau2\|chr18 (14748664-14749268)
	1-605, gnl\|Hg17\|chr16 (66818246-66817648)
	1-605, gnl\|Mm7\|chr8 (104727262-104726679)

	625-746, gnl\|bosTau2\|chr18 (14749270-14749391)
	625-746, gnl\|Mm7\|chr8 (104726678-104726565)