Non-Coding RNA Search

Ss1.1-Tra1-TCH01B120074.5

Sequence:


               
               ATTCCTGTCCTCATTCCGAACATTCTTAGCATCGCTCGCGCCTTGCCGCGCCGCCCGAGC
CGAGCCGAGCCTCTGCAGCCGCCGCCGCGGCCCCGCCGCCCGCCGCGGGCGCCCACCAAG
CACTTTGCAGACTCGCTTCCACCCTGCGGGCCAGTCCGCGCGGCGGGGCCCGGGCCCGGG
GCGGCCGCGTCCGGGGACAGGCCATGCAGTGAAGCCCCCCCACCCCGTCCACCTTTGCCC
GGAGCCGCGGGCAGCAGCCCCGTACGCCCAGCCGGCCCCGGGGCAGGAGCAGTGCTAACA
GGGGTGGGGTGGCCCAGCCCGGGGACTGGGAGCCGGGGAGGGAGCCGGGCTCCGAGCTGA
AAGCGAGGGAAGCAGCGCCGAAGTTTGCCTCGGACTCGCCGGGCGCTGCGGCGGCTCCCT
TCGCCGAGGTTTATTTTCTTGAAAAGGCTCCAGGCTTCGGCTTGGAAAATCCGGCCGCCA
AAATTGAGCCCAGCAGCTGGAGCGGCAGTGAGAGCCCTGCCGAAAATATGGAAAGGATGA
GTGACTCTGCAGATAAGCCCATTGACAATGATGCAGAAGGGGTCTGGAGCCCCGACATTG
AGCAGAGCTTTCAGGAAGCCTTGGCTATCTATCCACCATGTGGGAGGAGGAAAATCATCT
TATCAGATGAAGGCAAGATGTATGGTAGGAATGAATTAATAGCCAGATACATCAAACTCA
GGACAGGGAAGACGAGGACCAGAAAACAGGTGTCTAGTCATATACAGGTCTTAGCAAGAA
AGAAAGTTCGAGAAATTCAAGCCGCCATTAAGGTAACAAGCATGGATCAGACTGCGAAGG
ATAAGGCCCTGCAGCACATGGCCGCCATGTCATCAGCCCAGATCGTCTCGGCCACTGCCA
TTCACAACAAGCTGGGGCTGCCCGGGATTCCACGCCCCACCTTCCCAGGGGCGCCGGGGT
TCTGGCCGGGAATGATACAAACAGGGCAGCCTGGATCCTCACAAGACGTCAAGCCCTTCG
TGCAGCAGGCCTACCCCATCCAGCCAGCGGTCACGGCCCCCATTCCAGGGTTTGAGCCAG
CGTCAGCCCCAGCTCCCTCGGTCCCAGCCTGGCAGGGCCGCTCCATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCTGTCCTCATTCCGAACATTCTTAGCATCGCTCGCGCCTTGCCGCGCCGCCCGAGC
CGAGCCGAGCCTCTGCAGCCGCCGCCGCGGCCCCGCCGCCCGCCGCGGGCGCCCACCAAG
CACTTTGCAGACTCGCTTCCACCCTGCGGGCCAGTCCGCGCGGCGGGGCCCGGGCCCGGG
GCGGCCGCGTCCGGGGACAGGCCATGCAGTGAAGCCCCCCCACCCCGTCCACCTTTGCCC
GGAGCCGCGGGCAGCAGCCCCGTACGCCCAGCCGGCCCCGGGGCAGGAGCAGTGCTAACA
GGGGTGGGGTGGCCCAGCCCGGGGACTGGGAGCCGGGGAGGGAGCCGGGCTCCGAGCTGA
AAGCGAGGGAAGCAGCGCCGAAGTTTGCCTCGGACTCGCCGGGCGCTGCGGCGGCTCCCT
TCGCCGAGGTTTATTTTCTTGAAAAGGCTCCAGGCTTCGGCTTGGAAAATCCGGCCGCCA
AAATTGAGCCCAGCAGCTGGAGCGGCAGTGAGAGCCCTGCCGAAAATATGGAAAGGATGA
GTGACTCTGCAGATAAGCCCATTGACAATGATGCAGAAGGGGTCTGGAGCCCCGACATTG
AGCAGAGCTTTCAGGAAGCCTTGGCTATCTATCCACCATGTGGGAGGAGGAAAATCATCT
TATCAGATGAAGGCAAGATGTATGGTAGGAATGAATTAATAGCCAGATACATCAAACTCA
GGACAGGGAAGACGAGGACCAGAAAACAGGTGTCTAGTCATATACAGGTCTTAGCAAGAA
AGAAAGTTCGAGAAATTCAAGCCGCCATTAAGGTAACAAGCATGGATCAGACTGCGAAGG
ATAAGGCCCTGCAGCACATGGCCGCCATGTCATCAGCCCAGATCGTCTCGGCCACTGCCA
TTCACAACAAGCTGGGGCTGCCCGGGATTCCACGCCCCACCTTCCCAGGGGCGCCGGGGT
TCTGGCCGGGAATGATACAAACAGGGCAGCCTGGATCCTCACAAGACGTCAAGCCCTTCG
TGCAGCAGGCCTACCCCATCCAGCCAGCGGTCACGGCCCCCATTCCAGGGTTTGAGCCAG
CGTCAGCCCCAGCTCCCTCGGTCCCAGCCTGGCAGGGCCGCTCCATTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|42541028|gb|AAS19414.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42541028|gb|AAS19414.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               427-625, + strand, RNAz p=0.958786
               

               
               427-625, - strand, RNAz p=0.958786
               

               
               427-534, + strand, RNAz p=0.977796
               

               
               427-534, - strand, RNAz p=0.977796

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-625, + strand, RNAz p=0.958786
               

               
               427-625, - strand, RNAz p=0.958786
               

               
               427-534, + strand, RNAz p=0.977796
               

               
               427-534, - strand, RNAz p=0.977796

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021961, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021961, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               427-687, gnl|bosTau2|chr15 (23855043-23854783)
               

               
               427-687, gnl|canFam2|chr21 (38945618-38945891)
               

               
               427-687, gnl|danRer3|chr2 (4018088-4018358)
               

               
               427-687, gnl|dasNov1|scaffold_8692 (3050-2777)
               

               
               427-687, gnl|echTel1|scaffold_286358 (52239-51965)
               

               
               427-687, gnl|fr1|chrUn (36908378-36908642)
               

               
               427-687, gnl|galGal2|chr5 (5353494-5353223)
               

               
               427-687, gnl|hg17|chr11 (12742291-12742564)
               

               
               427-687, gnl|Hg17|chr11 (12742300-12742560)
               

               
               427-687, gnl|loxAfr1|scaffold_44420 (9226-9500)
               

               
               427-687, gnl|mm7|chr7 (108675394-108675667)
               

               
               427-687, gnl|Mm7|chr7 (108675403-108675663)
               

               
               427-687, gnl|monDom2|scaffold_10 (63364276-63364549)
               

               
               427-687, gnl|oryCun1|scaffold_203658 (46104-45830)
               

               
               427-687, gnl|panTro1|chr9 (12998530-12998803)
               

               
               427-687, gnl|rheMac2|chr14 (59148927-59148654)
               

               
               427-687, gnl|rn3|chr1 (170677264-170677535)
               

               
               427-687, gnl|tetNig1|chr5 (6169053-6169317)
               

               
               427-687, gnl|xenTro1|scaffold_1524 (87656-87393)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               427-687, gnl|bosTau2|chr15 (23855043-23854783)
               

               
               427-687, gnl|canFam2|chr21 (38945618-38945891)
               

               
               427-687, gnl|danRer3|chr2 (4018088-4018358)
               

               
               427-687, gnl|dasNov1|scaffold_8692 (3050-2777)
               

               
               427-687, gnl|echTel1|scaffold_286358 (52239-51965)
               

               
               427-687, gnl|fr1|chrUn (36908378-36908642)
               

               
               427-687, gnl|galGal2|chr5 (5353494-5353223)
               

               
               427-687, gnl|hg17|chr11 (12742291-12742564)
               

               
               427-687, gnl|Hg17|chr11 (12742300-12742560)
               

               
               427-687, gnl|loxAfr1|scaffold_44420 (9226-9500)
               

               
               427-687, gnl|mm7|chr7 (108675394-108675667)
               

               
               427-687, gnl|Mm7|chr7 (108675403-108675663)
               

               
               427-687, gnl|monDom2|scaffold_10 (63364276-63364549)
               

               
               427-687, gnl|oryCun1|scaffold_203658 (46104-45830)
               

               
               427-687, gnl|panTro1|chr9 (12998530-12998803)
               

               
               427-687, gnl|rheMac2|chr14 (59148927-59148654)
               

               
               427-687, gnl|rn3|chr1 (170677264-170677535)
               

               
               427-687, gnl|tetNig1|chr5 (6169053-6169317)
               

               
               427-687, gnl|xenTro1|scaffold_1524 (87656-87393)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.239292)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

	427-625, + strand, RNAz p=0.958786
	427-625, - strand, RNAz p=0.958786
	427-534, + strand, RNAz p=0.977796
	427-534, - strand, RNAz p=0.977796

	427-687, gnl\|bosTau2\|chr15 (23855043-23854783)
	427-687, gnl\|canFam2\|chr21 (38945618-38945891)
	427-687, gnl\|danRer3\|chr2 (4018088-4018358)
	427-687, gnl\|dasNov1\|scaffold_8692 (3050-2777)
	427-687, gnl\|echTel1\|scaffold_286358 (52239-51965)
	427-687, gnl\|fr1\|chrUn (36908378-36908642)
	427-687, gnl\|galGal2\|chr5 (5353494-5353223)
	427-687, gnl\|hg17\|chr11 (12742291-12742564)
	427-687, gnl\|Hg17\|chr11 (12742300-12742560)
	427-687, gnl\|loxAfr1\|scaffold_44420 (9226-9500)
	427-687, gnl\|mm7\|chr7 (108675394-108675667)
	427-687, gnl\|Mm7\|chr7 (108675403-108675663)
	427-687, gnl\|monDom2\|scaffold_10 (63364276-63364549)
	427-687, gnl\|oryCun1\|scaffold_203658 (46104-45830)
	427-687, gnl\|panTro1\|chr9 (12998530-12998803)
	427-687, gnl\|rheMac2\|chr14 (59148927-59148654)
	427-687, gnl\|rn3\|chr1 (170677264-170677535)
	427-687, gnl\|tetNig1\|chr5 (6169053-6169317)
	427-687, gnl\|xenTro1\|scaffold_1524 (87656-87393)