Non-Coding RNA Search

Ss1.1-Tra1-TCH01B120094.5

Sequence:


               
               CCGGGGGAAGGGAGGGAAGTCACTACAAGTCCAGAGAGCAGTAGTTTCTGCGACTCTGTT
AAATAGGATACTCAGTAGAGCTTTTTTTTTTAAATAAAAGCTAAACAAGTGATTGCTGTA
ACACTACAGATTCATTATTGCCAAAAAAGTTTCCAGCTTCACATTTGGAAGCCAGAGGAA
AGAAAGGCAGATGTTTCAGGTGGCTCACAGAGGAACATCTTCAGGGCGAAGGTACCTTGT
CGAGAACCATCCCGCCTGGCCGGCTCTCGTGGTCAGGTGAACAGACCTGCTCTGGGTAAG
TCCTCTGGAGTTGCTGAGCCTGTGGCCTCGTCGAAGGGCCTGGAGAGGTCCGTCCTCTTA
GCTGAGGACTCAGGTAGAAGTCCCACATGGTCTCCTTTGCTTTGCTTTCTTTTGACGGTA
ACTTCTCTCGACCTGTTCACCCGCGATCTCTGTGGACGTCCTGATGGACGCCATCCGGGC
AGACGGACAGGTGACGGGTCCGCGCTGCATCAGCACCTCCGTTCGGCTCCTCTCTGCACG
AACTCTCCAGTTACACTCAGAGCTCACAGTTACAGTCCACTGGAGGTGGTGCGGGGACCC
TCGAGAGGTTCGTGAGACTGTTCACGACGACTTCGTATCTCTAATTTAAACTTTAATGAT
AATGTCCCTTTAATATGGATTCCATTTGTATTTGTTTTTAAAACCTTGTAAATAAGAATG
TTTGAACTAAAACGTTGTGTTATTGCAAGGGTAGTTCAAGTTTACATGGGTTTTACATTG
GCAATGATGTGATCACTTTTTTTGATTCTGTGTATTCAGAGGTATTGAAAACAATTTCCT
GTTACTAAATTTTACAACTTCTATTAAGTCTAACTATAAATAATTTTATGTAAATTGATG
AAAACTTGAGCTGATTAATGTATTCTGGTATGATGTTTGAGTTTTAATCATTGTAATTGT
CCATAATTTGGAATGCTGTTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGGGAAGGGAGGGAAGTCACTACAAGTCCAGAGAGCAGTAGTTTCTGCGACTCTGTT
AAATAGGATACTCAGTAGAGCTTTTTTTTTTAAATAAAAGCTAAACAAGTGATTGCTGTA
ACACTACAGATTCATTATTGCCAAAAAAGTTTCCAGCTTCACATTTGGAAGCCAGAGGAA
AGAAAGGCAGATGTTTCAGGTGGCTCACAGAGGAACATCTTCAGGGCGAAGGTACCTTGT
CGAGAACCATCCCGCCTGGCCGGCTCTCGTGGTCAGGTGAACAGACCTGCTCTGGGTAAG
TCCTCTGGAGTTGCTGAGCCTGTGGCCTCGTCGAAGGGCCTGGAGAGGTCCGTCCTCTTA
GCTGAGGACTCAGGTAGAAGTCCCACATGGTCTCCTTTGCTTTGCTTTCTTTTGACGGTA
ACTTCTCTCGACCTGTTCACCCGCGATCTCTGTGGACGTCCTGATGGACGCCATCCGGGC
AGACGGACAGGTGACGGGTCCGCGCTGCATCAGCACCTCCGTTCGGCTCCTCTCTGCACG
AACTCTCCAGTTACACTCAGAGCTCACAGTTACAGTCCACTGGAGGTGGTGCGGGGACCC
TCGAGAGGTTCGTGAGACTGTTCACGACGACTTCGTATCTCTAATTTAAACTTTAATGAT
AATGTCCCTTTAATATGGATTCCATTTGTATTTGTTTTTAAAACCTTGTAAATAAGAATG
TTTGAACTAAAACGTTGTGTTATTGCAAGGGTAGTTCAAGTTTACATGGGTTTTACATTG
GCAATGATGTGATCACTTTTTTTGATTCTGTGTATTCAGAGGTATTGAAAACAATTTCCT
GTTACTAAATTTTACAACTTCTATTAAGTCTAACTATAAATAATTTTATGTAAATTGATG
AAAACTTGAGCTGATTAATGTATTCTGGTATGATGTTTGAGTTTTAATCATTGTAATTGT
CCATAATTTGGAATGCTGTTATTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-981, gnl|bosTau2|chr9 (55826153-55827138)
               

               
               11-981, gnl|Hg17|chr6 (159024122-159025415)
               

               
               11-981, gnl|Mm7|chr13 (45709009-45708149)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-981, gnl|bosTau2|chr9 (55826153-55827138)
               

               
               11-981, gnl|Hg17|chr6 (159024122-159025415)
               

               
               11-981, gnl|Mm7|chr13 (45709009-45708149)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cst (0.280073)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               med (0.116252)

	11-981, gnl\|bosTau2\|chr9 (55826153-55827138)
	11-981, gnl\|Hg17\|chr6 (159024122-159025415)
	11-981, gnl\|Mm7\|chr13 (45709009-45708149)