Non-Coding RNA Search

Ss1.1-Tra1-TCH01C020017.5

Sequence:


               
               ACCTCAGCAGTGGTCTCTCAGTCCTCTCAAAGCAGAGAAAGAGTACTGTGTGCTGAGAGA
CCATGGCAAAGAATCCTCCAGAGAACTGTGAGGACTGTCACATTTTAAATGCAGAAGCTT
TTAAATCCAAGAAGATATGTAAATCACTTAAGATTTGTGGATTGGTATTTGGTATACTCG
CCCTAACGCTAATTGTCCTATTTTGGGGGGGCAAGCACTTCTGGCCTGAGACACCCAAAA
AAACATACGACATGGAACACACTTTCTACAGCAATGGAGAGAAGAAGAAGATTTACATGG
AAATTGATCCTGTGACCAGAACCGAAATATTCAGAAGTGGAAATGGCACTGATGAAACAT
TGGAAGTACATGACTTTAAAAATGGATACACTGGCATTTACTTTGTAGGTCTTCAAAAAT
GCTTCATCAAAACTCAGATTAAAGTGATTCCTGAATTTTCTGAACCAGAGGAAGAAATAG
ATGAGAATGAAGAAATTACCACAACTTTCTTTGAACAGTCAGTGATTTGGGTCCCAGCAG
AAAAGCCTATTGAAAACCGAGACTTTCTTAAAAATTCCAAAATTCTGGAGATTTGTGATA
ATGTGACCATGTATTGGATCAATCCCACTCTAATAGCAGTTTCAGAGTTACAAGACTTTG
AGGAGGATGGTGAAGACCTTCACTTTCCTACCAATGAAAAAAAGGGCATTGAACAAAACG
AGCAGTGGGTGGTCCCTCAAGTGAAGGTGGAGAAGACCCGTCATGCCAGACAAGCAAGTG
AGGAAGAACTCCCAATCAATGACTATACTGAAAATGGAATAGAATTCGACCCCATGTTGG
ATGAGAGAGGCTATTGTTGTATCTACTGCCGTCGAGGCAACCGCTACTGCCGCCGTGTCT
GTGAACCTTTACTAGGTTACTACCCTTATCCATACTGCTACCAAGGAGGGCGGGTTATCT
GTCGTGTCATCATGCCTTGCAACTGGTGGGTGGCCCGCATGCTGGGGAGGGTTTAAATAG
CAAGTTTGAGCTTGAGTAAACTTCTGGAAGCCAATATATAATAAATGCATGCTATTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCAGCAGTGGTCTCTCAGTCCTCTCAAAGCAGAGAAAGAGTACTGTGTGCTGAGAGA
CCATGGCAAAGAATCCTCCAGAGAACTGTGAGGACTGTCACATTTTAAATGCAGAAGCTT
TTAAATCCAAGAAGATATGTAAATCACTTAAGATTTGTGGATTGGTATTTGGTATACTCG
CCCTAACGCTAATTGTCCTATTTTGGGGGGGCAAGCACTTCTGGCCTGAGACACCCAAAA
AAACATACGACATGGAACACACTTTCTACAGCAATGGAGAGAAGAAGAAGATTTACATGG
AAATTGATCCTGTGACCAGAACCGAAATATTCAGAAGTGGAAATGGCACTGATGAAACAT
TGGAAGTACATGACTTTAAAAATGGATACACTGGCATTTACTTTGTAGGTCTTCAAAAAT
GCTTCATCAAAACTCAGATTAAAGTGATTCCTGAATTTTCTGAACCAGAGGAAGAAATAG
ATGAGAATGAAGAAATTACCACAACTTTCTTTGAACAGTCAGTGATTTGGGTCCCAGCAG
AAAAGCCTATTGAAAACCGAGACTTTCTTAAAAATTCCAAAATTCTGGAGATTTGTGATA
ATGTGACCATGTATTGGATCAATCCCACTCTAATAGCAGTTTCAGAGTTACAAGACTTTG
AGGAGGATGGTGAAGACCTTCACTTTCCTACCAATGAAAAAAAGGGCATTGAACAAAACG
AGCAGTGGGTGGTCCCTCAAGTGAAGGTGGAGAAGACCCGTCATGCCAGACAAGCAAGTG
AGGAAGAACTCCCAATCAATGACTATACTGAAAATGGAATAGAATTCGACCCCATGTTGG
ATGAGAGAGGCTATTGTTGTATCTACTGCCGTCGAGGCAACCGCTACTGCCGCCGTGTCT
GTGAACCTTTACTAGGTTACTACCCTTATCCATACTGCTACCAAGGAGGGCGGGTTATCT
GTCGTGTCATCATGCCTTGCAACTGGTGGGTGGCCCGCATGCTGGGGAGGGTTTAAATAG
CAAGTTTGAGCTTGAGTAAACTTCTGGAAGCCAATATATAATAAATGCATGCTATTCAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q95M14_HORSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q95M14_HORSE

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               111-242, gnl|bosTau2|chrX (15557084-15556953)
               

               
               111-242, gnl|Hg17|chrX (99646373-99646504)
               

               
               111-242, gnl|Mm7|chrX (128570635-128570766)
               


               
               243-384, gnl|bosTau2|chrX (15546862-15546721)
               

               
               243-384, gnl|Hg17|chrX (99655037-99655178)
               

               
               243-384, gnl|Mm7|chrX (128578936-128579077)
               


               
               484-639, gnl|bosTau2|chrX (15536076-15535921)
               

               
               484-639, gnl|Hg17|chrX (99658644-99658799)
               

               
               484-639, gnl|Mm7|chrX (128582073-128582228)
               


               
               807-1080, gnl|bosTau2|chrX (15533795-15533519)
               

               
               807-1080, gnl|Hg17|chrX (99660650-99660922)
               

               
               807-1080, gnl|Mm7|chrX (128584409-128584685)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-242, gnl|bosTau2|chrX (15557084-15556953)
               

               
               111-242, gnl|Hg17|chrX (99646373-99646504)
               

               
               111-242, gnl|Mm7|chrX (128570635-128570766)
               


               
               243-384, gnl|bosTau2|chrX (15546862-15546721)
               

               
               243-384, gnl|Hg17|chrX (99655037-99655178)
               

               
               243-384, gnl|Mm7|chrX (128578936-128579077)
               


               
               484-639, gnl|bosTau2|chrX (15536076-15535921)
               

               
               484-639, gnl|Hg17|chrX (99658644-99658799)
               

               
               484-639, gnl|Mm7|chrX (128582073-128582228)
               


               
               807-1080, gnl|bosTau2|chrX (15533795-15533519)
               

               
               807-1080, gnl|Hg17|chrX (99660650-99660922)
               

               
               807-1080, gnl|Mm7|chrX (128584409-128584685)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eru (0.720288)
               

               
               ese (0.253004)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.720288)
               

               
               ese (0.253004)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	111-242, gnl\|bosTau2\|chrX (15557084-15556953)
	111-242, gnl\|Hg17\|chrX (99646373-99646504)
	111-242, gnl\|Mm7\|chrX (128570635-128570766)

	243-384, gnl\|bosTau2\|chrX (15546862-15546721)
	243-384, gnl\|Hg17\|chrX (99655037-99655178)
	243-384, gnl\|Mm7\|chrX (128578936-128579077)

	484-639, gnl\|bosTau2\|chrX (15536076-15535921)
	484-639, gnl\|Hg17\|chrX (99658644-99658799)
	484-639, gnl\|Mm7\|chrX (128582073-128582228)

	807-1080, gnl\|bosTau2\|chrX (15533795-15533519)
	807-1080, gnl\|Hg17\|chrX (99660650-99660922)
	807-1080, gnl\|Mm7\|chrX (128584409-128584685)

	eru (0.720288)
	ese (0.253004)
	eep (0.122564)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)