Non-Coding RNA Search

Ss1.1-Tra1-TCH01C020022.5

Sequence:


               
               TTTTATACGAAGGGAGCAGTGCTTTACTCCCTTTTCAGAACTTCAGATGAAGGTCTTTCA
TGAATTGCTGTTACATTCAAATGTGTATTGGTTGAACTCAATTGAGCTGGAATTTACAAA
AAGATCAGTTCTACTAGAACCTCTGCCCTACAGTGAGATATCTTCCTCAGTGGAGTTCCT
GATGTAGCTCAGCGGAAAATGAATCTGACTGGTATCCATAAGGACACAGGTTCGTGGGAA
CCTCCTTATGTGGCAGGTGCGGCCCTAAAAAAAGATTTAAAAAAAAAATCGTGTTAAGAA
TCAGGTTGCGGAGTTCCTGTCGTGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAG
GTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTAGGTTAACGATCCGGCGTTGCCGTGAGCT
GTGGTGTAGGTTGCAGACGCGGCTCGGATCCCGCGTTGCTGTGGCTCTGGCGTAGGCCGG
TGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAACCTCCATATGCCGCGGGAGCGGCCC
AAGAAATAGCAACAACAACAACAACAACAACAACAAAAAAAAAGAATCAGGTTGGCATTT
TGGGGAGTTCCTATTGTGGCTCAGCGGTAACGAAGCCCACTAGTATCCATTAGAATGCAG
TTCGATCCATGGCCCTGCTCAATGGGTTAAGGATCCAGTGTTGCCCTGAGCTGTGGCAGG
TTCGGATATGGAGTTGCTGGCTGTGGCTGTGGCATAGGCTGGCGGCTACAGCTGGGATTC
AGCCCTCAGCCTGGGAGCTTACATTTGCTGCAGGTGCCACCCTAAAAAGCATTTTGGAAT
AGTTTTAAAAGGTCCAAGGTTTTGGAATGGATGTGTGAGTACACTTGGGAAATTAGTGCC
TGTGTTCCAAGGTGCTTACAGACATTCATATGGAAAGTAGGATGATTGAAGGGCACATCA
GAATTGGGCACACCTTAATAAAGCTTTAGGGCAGTTCAGGATCTTCCATCATTTGCAGTT
TCCCCTGTGGTGCCATTTTTCTTCCTTGGTTGCTGTGGCCTAGACAGTTTTTATTAAAAA
TGCAAATATTGGGAATTCCTGTCCTGGCTTGGCGAAACGAATCTGACTAGCATCCATGAG
GACACAGCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATACGAAGGGAGCAGTGCTTTACTCCCTTTTCAGAACTTCAGATGAAGGTCTTTCA
TGAATTGCTGTTACATTCAAATGTGTATTGGTTGAACTCAATTGAGCTGGAATTTACAAA
AAGATCAGTTCTACTAGAACCTCTGCCCTACAGTGAGATATCTTCCTCAGTGGAGTTCCT
GATGTAGCTCAGCGGAAAATGAATCTGACTGGTATCCATAAGGACACAGGTTCGTGGGAA
CCTCCTTATGTGGCAGGTGCGGCCCTAAAAAAAGATTTAAAAAAAAAATCGTGTTAAGAA
TCAGGTTGCGGAGTTCCTGTCGTGGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAG
GTTGCGGGTTCGGTCCCTGCCCTTGCTCAGTAGGTTAACGATCCGGCGTTGCCGTGAGCT
GTGGTGTAGGTTGCAGACGCGGCTCGGATCCCGCGTTGCTGTGGCTCTGGCGTAGGCCGG
TGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAACCTCCATATGCCGCGGGAGCGGCCC
AAGAAATAGCAACAACAACAACAACAACAACAACAAAAAAAAAGAATCAGGTTGGCATTT
TGGGGAGTTCCTATTGTGGCTCAGCGGTAACGAAGCCCACTAGTATCCATTAGAATGCAG
TTCGATCCATGGCCCTGCTCAATGGGTTAAGGATCCAGTGTTGCCCTGAGCTGTGGCAGG
TTCGGATATGGAGTTGCTGGCTGTGGCTGTGGCATAGGCTGGCGGCTACAGCTGGGATTC
AGCCCTCAGCCTGGGAGCTTACATTTGCTGCAGGTGCCACCCTAAAAAGCATTTTGGAAT
AGTTTTAAAAGGTCCAAGGTTTTGGAATGGATGTGTGAGTACACTTGGGAAATTAGTGCC
TGTGTTCCAAGGTGCTTACAGACATTCATATGGAAAGTAGGATGATTGAAGGGCACATCA
GAATTGGGCACACCTTAATAAAGCTTTAGGGCAGTTCAGGATCTTCCATCATTTGCAGTT
TCCCCTGTGGTGCCATTTTTCTTCCTTGGTTGCTGTGGCCTAGACAGTTTTTATTAAAAA
TGCAAATATTGGGAATTCCTGTCCTGGCTTGGCGAAACGAATCTGACTAGCATCCATGAG
GACACAGCTTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q16861_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q16861_HUMAN

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               7-148, gnl|bosTau2|chr19 (40973914-40973772)
               

               
               7-148, gnl|Hg17|chr17 (43532537-43532080)
               


               
               829-1075, gnl|bosTau2|chr19 (40973726-40973479)
               

               
               829-1075, gnl|Hg17|chr17 (43532037-43531791)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-148, gnl|bosTau2|chr19 (40973914-40973772)
               

               
               7-148, gnl|Hg17|chr17 (43532537-43532080)
               


               
               829-1075, gnl|bosTau2|chr19 (40973726-40973479)
               

               
               829-1075, gnl|Hg17|chr17 (43532037-43531791)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cut (0.169924)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               csk (0.140746)

	7-148, gnl\|bosTau2\|chr19 (40973914-40973772)
	7-148, gnl\|Hg17\|chr17 (43532537-43532080)

	829-1075, gnl\|bosTau2\|chr19 (40973726-40973479)
	829-1075, gnl\|Hg17\|chr17 (43532037-43531791)