Ss1.1-Tra1-TCH01C020084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGAAGCCCGAGCCTGAGCTGATTTATGGAGACCTGAGGGGCTCGGTGACATTTGACTG CGCCCTGGGCCAGGAGATGGCAAATGTGGCCAAATTTCTGTGCCAGCTAAAAAATGGGAA AACCTGCAATGTGGTCATCAACACCCTGGGGAAGAAGGCTCAGGACTTTGAGGGCAGGAT CCTGCTCACTCCCAAGGAAAACAGCCACTTCAGCGTGCACATCACCGGGCTGCGGAAAGA GGACGCAGGACACTACCTGTGCGGAGCCCACCCTGACGGTGAGCCTAAGGAAGGCTGGCC GGTCCAGGCTTGGCAGCTCTTCATCAATGAAGATACTATGATTCCCCCAAGATCCTCCGT GGTGAGAGGTGTGGTGGGAGGCTCCGTGGCCGTGACCTGCCCCTACAACCCGAAGGAAAC AAACAGCCTGAAGTACTGGTGTCGCTGGGAAGAGAATGAAAACGGCCGCTGCCCGCAGCT GGTGGAAAGCAGCGGGCTAGTGAACGAGCAATACGAGGGCCGGCTCGCGCTGTACGAGGA GCCAGGCAATGGCACCTTCACGGTCATACTCAACCAGCTCACCAACCGGGACGCCGGCTT CTACTGGTGTTTGACCAACGAGGACTCTCGCTGGAGGTCCACCGTAGAGCTCAAGATTGT TGAAGGAGAACCGAACCTCAAGCTACCCGAGAATGTCACCGCTTGGGTGGGAGAGACCCT CAAGCTCTCCTGCCACTTCCCATGCAAATTCTACTCCTACCAGAAGTACTGGTGTAAGTG GAGCAACACCGGCTGCAGGGCCCTGCCCAGCCAGGACGAAGGCCAGAGCCAGGCCTTTGT GAACTGTGACAAGAAGAGCCAGATCATCTCCCTGAACCTGAACCCTGTCAGAAAGGAGGA TGAAGGCTGGTACTGGTGCGGGGTGAAGGACGGACTCCACTATGGAGAGACTGGGGCTGT CTACGTGGCAGTGGAACAGAAGGCAAAGGGGTCGGGAGATGCCCGTCTAGCAAATGCTGC TCCGGCTCCTGCTGAAGACGCAATAGAGCCAAGGGCCAGGGAGACTGAGAACGAGGTCCT CCTGGATCCCAGCCTCATTGCAGAGGACAGAGCAGTGAAGGATGGTGAAGGCCCAGCTAG TGGGAGTGGAGTACCTGCAGCCCCTGGCAGCTCTGTGGGCCAAGGCGGGGGCTCCAAAGC GGTCGTCTCCACCCTGGTGCCCCTGGCGCTGGTGATGCTTGTGGGGGCTGTGACCATTGG GGTGCTCAGAGCCCGGCACAGGAAGAATGTCGACCGGATTTCAATCAGAAGCTACAGGAC AGACATCAGCATGTCAGACTTTGAGAACTCCCGGGATTTTGGAGCTCATGACAACGCGGG AGCCACTCTAGACACCCAGGAGACATCTCTTGGAGGGAAAGATAGGTTCACCACCACTAC CGAGAATACCATGGAGGACAAAGAACCCAAGAGGGCGAAAAGGTCATCCAAGGAGGAAGC CGACAAGGCCTTCACCACCTTCCTGCTCCAGGCCAACAGCATTATCGCCGCTACCCAGAA CGGCCCCAGAGAAGCCTAGACAGAGCGCTGGCTGCCCCGTCCCTGAGCATGTGGCAATCA CCTTCAGAATCACGTTGATCCTCAGGGCCCTCAGCTCCGGGGGCTCCCCTGCCTGCACGC ACACACCCCACCTAGGCTTTTGCTACCTGTCCTCAGAGGGTGTGTCGGTCCCTTCTCGGT GGCATCCAAGCCGGCTTACTTGTTCCTGTTGGGGCTGAGGTGACATGAGGAATTTCCACA TGCGGCTTATTTCTAACGAGAGAACGAAGGTGTGGAAGGAGATTAAGATCCTAGCGAGGC GTCTCAGAAGAAAGAAAAAAAGGGGACCAGGGTGGATGGGGAGACGATTTCAGAAAGGAA GGCCATTCTGGGCTTCTCTGCACCCTTATTTGGAGATGTCAGTGGGATTCTCTCTTCCAC TCCATCCCTGCATCTCTCCATCTCCCCTCGCTTGCATCTTCTCTTCTTCTTTCCCTCTGA AACACCTGTGTGTGTGTGGAGTTCCCATCATGGCACAGTGGAAATGACTCTGACTAGGAA CCCTGAGGTTGCAGGTTCAATCCCCGGCCTCGATCAGTGGGTAAAGGTTCTGGCGTTGCC GTGAGTTGTAGTATGGGTTGCAGATGTGGCTTGGACCCTGCATTGCTGTGGCCGTGGTGT AGGCCAGCAGTTGTAGCTCCGATTGGACCCCTAGCCTGGGAACCTCCAAGGGCCGCAGGT GTGGCCATAAAAAGAAAAGGAAAAAAACAAAAAACAAAAAAAAAACCTGTGTGTGGATAC TCACTAGAACCCAAGCGCTTTGCTGGACCCCGGGACAGACAGGCTGCAAACTTAGCCAGC AGGCTTTCTGTAAACATCACCACATCCTGGGAAACCACAGCATCTCTATGTGTTTATACT CACTGACATCCTTGTCAGGGATACTCACCGCTGCCTGCTTTGGGAGAAATTATAAAAGGT CTGGAGTCCTAAGGCCTTAGGATTATGAAACGTTGGGCATAGGTACAAGGAATCCCTAAC ACACATTCTTACTCTTCAACTTGAGAAAACTGAGGTCCTGAGAGGCGAAGAGGTTTTTCT CAAGGGTAGCGAGGGAGATCGTCCAGCGTCCAAGCGAGATTTGGCATCTCTTGTCTCTAT ACAACACCCCCTGCTTTCCTGATAGAGATGGACTTGTACCCAAGGAGGAAGAGGAAGAGA AAAATAGACACGAGTCTTTCGCACGCATGCCCCCCACCCCCGGGGAAGACAGCTCTTTCC CTTTCAGTCACTCTCAGAGACCTAAGAGGATAAAGGAATGTCCAAACACTCACAACGCCT GTATTTGAAGAGTTCTGGGTAGACGTGGGGGAGGGAAGAGGTTTGACGGTGCCAGGGAGG GGCTGATGTCCCAAGAGCTAAGGTTTAGGGTCTTTTTCCCTCTAAGCTCTGCACTTCCAC TAGCACCTATGAGCTAGCACTTGCTGACAAATCAAAAATGTGAATTAATTAATCATTAAA GACCGTGATTGCCATCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGAAGCCCGAGCCTGAGCTGATTTATGGAGACCTGAGGGGCTCGGTGACATTTGACTG CGCCCTGGGCCAGGAGATGGCAAATGTGGCCAAATTTCTGTGCCAGCTAAAAAATGGGAA AACCTGCAATGTGGTCATCAACACCCTGGGGAAGAAGGCTCAGGACTTTGAGGGCAGGAT CCTGCTCACTCCCAAGGAAAACAGCCACTTCAGCGTGCACATCACCGGGCTGCGGAAAGA GGACGCAGGACACTACCTGTGCGGAGCCCACCCTGACGGTGAGCCTAAGGAAGGCTGGCC GGTCCAGGCTTGGCAGCTCTTCATCAATGAAGATACTATGATTCCCCCAAGATCCTCCGT GGTGAGAGGTGTGGTGGGAGGCTCCGTGGCCGTGACCTGCCCCTACAACCCGAAGGAAAC AAACAGCCTGAAGTACTGGTGTCGCTGGGAAGAGAATGAAAACGGCCGCTGCCCGCAGCT GGTGGAAAGCAGCGGGCTAGTGAACGAGCAATACGAGGGCCGGCTCGCGCTGTACGAGGA GCCAGGCAATGGCACCTTCACGGTCATACTCAACCAGCTCACCAACCGGGACGCCGGCTT CTACTGGTGTTTGACCAACGAGGACTCTCGCTGGAGGTCCACCGTAGAGCTCAAGATTGT TGAAGGAGAACCGAACCTCAAGCTACCCGAGAATGTCACCGCTTGGGTGGGAGAGACCCT CAAGCTCTCCTGCCACTTCCCATGCAAATTCTACTCCTACCAGAAGTACTGGTGTAAGTG GAGCAACACCGGCTGCAGGGCCCTGCCCAGCCAGGACGAAGGCCAGAGCCAGGCCTTTGT GAACTGTGACAAGAAGAGCCAGATCATCTCCCTGAACCTGAACCCTGTCAGAAAGGAGGA TGAAGGCTGGTACTGGTGCGGGGTGAAGGACGGACTCCACTATGGAGAGACTGGGGCTGT CTACGTGGCAGTGGAACAGAAGGCAAAGGGGTCGGGAGATGCCCGTCTAGCAAATGCTGC TCCGGCTCCTGCTGAAGACGCAATAGAGCCAAGGGCCAGGGAGACTGAGAACGAGGTCCT CCTGGATCCCAGCCTCATTGCAGAGGACAGAGCAGTGAAGGATGGTGAAGGCCCAGCTAG TGGGAGTGGAGTACCTGCAGCCCCTGGCAGCTCTGTGGGCCAAGGCGGGGGCTCCAAAGC GGTCGTCTCCACCCTGGTGCCCCTGGCGCTGGTGATGCTTGTGGGGGCTGTGACCATTGG GGTGCTCAGAGCCCGGCACAGGAAGAATGTCGACCGGATTTCAATCAGAAGCTACAGGAC AGACATCAGCATGTCAGACTTTGAGAACTCCCGGGATTTTGGAGCTCATGACAACGCGGG AGCCACTCTAGACACCCAGGAGACATCTCTTGGAGGGAAAGATAGGTTCACCACCACTAC CGAGAATACCATGGAGGACAAAGAACCCAAGAGGGCGAAAAGGTCATCCAAGGAGGAAGC CGACAAGGCCTTCACCACCTTCCTGCTCCAGGCCAACAGCATTATCGCCGCTACCCAGAA CGGCCCCAGAGAAGCCTAGACAGAGCGCTGGCTGCCCCGTCCCTGAGCATGTGGCAATCA CCTTCAGAATCACGTTGATCCTCAGGGCCCTCAGCTCCGGGGGCTCCCCTGCCTGCACGC ACACACCCCACCTAGGCTTTTGCTACCTGTCCTCAGAGGGTGTGTCGGTCCCTTCTCGGT GGCATCCAAGCCGGCTTACTTGTTCCTGTTGGGGCTGAGGTGACATGAGGAATTTCCACA TGCGGCTTATTTCTAACGAGAGAACGAAGGTGTGGAAGGAGATTAAGATCCTAGCGAGGC GTCTCAGAAGAAAGAAAAAAAGGGGACCAGGGTGGATGGGGAGACGATTTCAGAAAGGAA GGCCATTCTGGGCTTCTCTGCACCCTTATTTGGAGATGTCAGTGGGATTCTCTCTTCCAC TCCATCCCTGCATCTCTCCATCTCCCCTCGCTTGCATCTTCTCTTCTTCTTTCCCTCTGA AACACCTGTGTGTGTGTGGAGTTCCCATCATGGCACAGTGGAAATGACTCTGACTAGGAA CCCTGAGGTTGCAGGTTCAATCCCCGGCCTCGATCAGTGGGTAAAGGTTCTGGCGTTGCC GTGAGTTGTAGTATGGGTTGCAGATGTGGCTTGGACCCTGCATTGCTGTGGCCGTGGTGT AGGCCAGCAGTTGTAGCTCCGATTGGACCCCTAGCCTGGGAACCTCCAAGGGCCGCAGGT GTGGCCATAAAAAGAAAAGGAAAAAAACAAAAAACAAAAAAAAAACCTGTGTGTGGATAC TCACTAGAACCCAAGCGCTTTGCTGGACCCCGGGACAGACAGGCTGCAAACTTAGCCAGC AGGCTTTCTGTAAACATCACCACATCCTGGGAAACCACAGCATCTCTATGTGTTTATACT CACTGACATCCTTGTCAGGGATACTCACCGCTGCCTGCTTTGGGAGAAATTATAAAAGGT CTGGAGTCCTAAGGCCTTAGGATTATGAAACGTTGGGCATAGGTACAAGGAATCCCTAAC ACACATTCTTACTCTTCAACTTGAGAAAACTGAGGTCCTGAGAGGCGAAGAGGTTTTTCT CAAGGGTAGCGAGGGAGATCGTCCAGCGTCCAAGCGAGATTTGGCATCTCTTGTCTCTAT ACAACACCCCCTGCTTTCCTGATAGAGATGGACTTGTACCCAAGGAGGAAGAGGAAGAGA AAAATAGACACGAGTCTTTCGCACGCATGCCCCCCACCCCCGGGGAAGACAGCTCTTTCC CTTTCAGTCACTCTCAGAGACCTAAGAGGATAAAGGAATGTCCAAACACTCACAACGCCT GTATTTGAAGAGTTCTGGGTAGACGTGGGGGAGGGAAGAGGTTTGACGGTGCCAGGGAGG GGCTGATGTCCCAAGAGCTAAGGTTTAGGGTCTTTTTCCCTCTAAGCTCTGCACTTCCAC TAGCACCTATGAGCTAGCACTTGCTGACAAATCAAAAATGTGAATTAATTAATCATTAAA GACCGTGATTGCCATCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 750-947, + strand, RNAz p=0.9685 | |
| 1913-2032, - strand, RNAz p=0.97822 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 750-947, + strand, RNAz p=0.9685 | |
| 1913-2032, - strand, RNAz p=0.97822 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-332, gnl|bosTau2|chr16 (3963422-3963753) | |
| 1-332, gnl|canFam2|chr7 (9032777-9033161) | |
| 1-332, gnl|dasNov1|scaffold_18752 (41939-42328) | |
| 1-332, gnl|echTel1|scaffold_307584 (47828-48216) | |
| 1-332, gnl|hg17|chr1 (203498797-203499185) | |
| 1-332, gnl|Hg17|chr1 (203499169-203498835) | |
| 1-332, gnl|loxAfr1|scaffold_5057 (31945-31561) | |
| 1-332, gnl|mm7|chr1 (130749211-130748825) | |
| 1-332, gnl|Mm7|chr1 (130748839-130749170) | |
| 1-332, gnl|oryCun1|scaffold_210184 (218403-218770) | |
| 1-332, gnl|panTro1|chr1 (187080496-187080884) | |
| 1-332, gnl|rheMac2|chr1 (163419021-163418633) | |
| 1-332, gnl|rn3|chr13 (43812635-43812262) | |
| 664-990, gnl|bosTau2|chr16 (3966194-3966520) | |
| 664-990, gnl|canFam2|chr7 (9030314-9030748) | |
| 664-990, gnl|echTel1|scaffold_307584 (44743-45173) | |
| 664-990, gnl|galGal2|chr26 (1162511-1162944) | |
| 664-990, gnl|hg17|chr1 (203496140-203496596) | |
| 664-990, gnl|Hg17|chr1 (203496488-203496159) | |
| 664-990, gnl|loxAfr1|scaffold_5057 (34754-34325) | |
| 664-990, gnl|mm7|chr1 (130751652-130751211) | |
| 664-990, gnl|Mm7|chr1 (130751299-130751628) | |
| 664-990, gnl|monDom2|scaffold_13 (9187995-9188407) | |
| 664-990, gnl|oryCun1|scaffold_210184 (215014-215421) | |
| 664-990, gnl|panTro1|chr1 (187077846-187078302) | |
| 664-990, gnl|rheMac2|chr1 (163421699-163421247) | |
| 664-990, gnl|rn3|chr13 (43815054-43814611) | |
| 1292-1422, gnl|bosTau2|chr16 (3969054-3969184) | |
| 1292-1422, gnl|canFam2|chr7 (9027771-9027920) | |
| 1292-1422, gnl|echTel1|scaffold_307584 (41226-41360) | |
| 1292-1422, gnl|galGal2|chr26 (1161081-1161224) | |
| 1292-1422, gnl|hg17|chr1 (203493407-203493556) | |
| 1292-1422, gnl|Hg17|chr1 (203493543-203493413) | |
| 1292-1422, gnl|loxAfr1|scaffold_5057 (37648-37499) | |
| 1292-1422, gnl|mm7|chr1 (130753707-130753558) | |
| 1292-1422, gnl|Mm7|chr1 (130753569-130753699) | |
| 1292-1422, gnl|monDom2|scaffold_13 (9183954-9184099) | |
| 1292-1422, gnl|oryCun1|scaffold_210184 (212797-212947) | |
| 1292-1422, gnl|panTro1|chr1 (187075070-187075219) | |
| 1292-1422, gnl|rheMac2|chr1 (163424647-163424498) | |
| 1292-1422, gnl|rn3|chr13 (43817085-43816935) | |
| 1483-2037, gnl|bosTau2|chr16 (3970361-3970903) | |
| 1483-2037, gnl|Hg17|chr1 (203492154-203491631) | |
| 1483-2037, gnl|Mm7|chr1 (130754882-130755347) | |
| 2483-3078, gnl|bosTau2|chr16 (3971047-3971647) | |
| 2483-3078, gnl|Hg17|chr1 (203491489-203490262) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-332, gnl|bosTau2|chr16 (3963422-3963753) | |
| 1-332, gnl|canFam2|chr7 (9032777-9033161) | |
| 1-332, gnl|dasNov1|scaffold_18752 (41939-42328) | |
| 1-332, gnl|echTel1|scaffold_307584 (47828-48216) | |
| 1-332, gnl|hg17|chr1 (203498797-203499185) | |
| 1-332, gnl|Hg17|chr1 (203499169-203498835) | |
| 1-332, gnl|loxAfr1|scaffold_5057 (31945-31561) | |
| 1-332, gnl|mm7|chr1 (130749211-130748825) | |
| 1-332, gnl|Mm7|chr1 (130748839-130749170) | |
| 1-332, gnl|oryCun1|scaffold_210184 (218403-218770) | |
| 1-332, gnl|panTro1|chr1 (187080496-187080884) | |
| 1-332, gnl|rheMac2|chr1 (163419021-163418633) | |
| 1-332, gnl|rn3|chr13 (43812635-43812262) | |
| 664-990, gnl|bosTau2|chr16 (3966194-3966520) | |
| 664-990, gnl|canFam2|chr7 (9030314-9030748) | |
| 664-990, gnl|echTel1|scaffold_307584 (44743-45173) | |
| 664-990, gnl|galGal2|chr26 (1162511-1162944) | |
| 664-990, gnl|hg17|chr1 (203496140-203496596) | |
| 664-990, gnl|Hg17|chr1 (203496488-203496159) | |
| 664-990, gnl|loxAfr1|scaffold_5057 (34754-34325) | |
| 664-990, gnl|mm7|chr1 (130751652-130751211) | |
| 664-990, gnl|Mm7|chr1 (130751299-130751628) | |
| 664-990, gnl|monDom2|scaffold_13 (9187995-9188407) | |
| 664-990, gnl|oryCun1|scaffold_210184 (215014-215421) | |
| 664-990, gnl|panTro1|chr1 (187077846-187078302) | |
| 664-990, gnl|rheMac2|chr1 (163421699-163421247) | |
| 664-990, gnl|rn3|chr13 (43815054-43814611) | |
| 1292-1422, gnl|bosTau2|chr16 (3969054-3969184) | |
| 1292-1422, gnl|canFam2|chr7 (9027771-9027920) | |
| 1292-1422, gnl|echTel1|scaffold_307584 (41226-41360) | |
| 1292-1422, gnl|galGal2|chr26 (1161081-1161224) | |
| 1292-1422, gnl|hg17|chr1 (203493407-203493556) | |
| 1292-1422, gnl|Hg17|chr1 (203493543-203493413) | |
| 1292-1422, gnl|loxAfr1|scaffold_5057 (37648-37499) | |
| 1292-1422, gnl|mm7|chr1 (130753707-130753558) | |
| 1292-1422, gnl|Mm7|chr1 (130753569-130753699) | |
| 1292-1422, gnl|monDom2|scaffold_13 (9183954-9184099) | |
| 1292-1422, gnl|oryCun1|scaffold_210184 (212797-212947) | |
| 1292-1422, gnl|panTro1|chr1 (187075070-187075219) | |
| 1292-1422, gnl|rheMac2|chr1 (163424647-163424498) | |
| 1292-1422, gnl|rn3|chr13 (43817085-43816935) | |
| 1483-2037, gnl|bosTau2|chr16 (3970361-3970903) | |
| 1483-2037, gnl|Hg17|chr1 (203492154-203491631) | |
| 1483-2037, gnl|Mm7|chr1 (130754882-130755347) | |
| 2483-3078, gnl|bosTau2|chr16 (3971047-3971647) | |
| 2483-3078, gnl|Hg17|chr1 (203491489-203490262) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| col (3.51014) | |
| cje (2.97422) | |
| cga (1.95367) | |
| sin (1.92442) | |
| duo (1.38241) | |
| clu (1.07681) | |
| jej (0.890296) | |
| tra (0.861645) | |
| cmu (0.372787) | |
| mas (0.210305) | |
| sto (0.179824) | |
| ill (0.175593) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nmm (0.132802) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (3.51014) | |
| cje (2.97422) | |
| cga (1.95367) | |
| sin (1.92442) | |
| duo (1.38241) | |
| clu (1.07681) | |
| jej (0.890296) | |
| tra (0.861645) | |
| cmu (0.372787) | |
| mas (0.210305) | |
| sto (0.179824) | |
| ill (0.175593) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nmm (0.132802) |