Ss1.1-Tra1-TCH01C020095.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCAGGTCTACTACTTCGGCCCATGTGGGAAATACAACGCCATGGTGCTGGAGCTGCTC GGGCCCAGCCTGGAGGACCTGTTCGACTTGTGTGACCGCACGTTCACGCTCAAGACGGTG CTCATGATCGCCATCCAGCTGATCACGCGCATGGAGTACGTGCACACCAAGAGCCTCATC TACCGCGACGTGAAGCCCGAGAACTTCCTGGTGGGGCGGCCGGGCACCAAGCGGCAGCAC GCCATCCACATCATCGACTTCGGCCTGGCCAAGGAGTACATCGACCCCGAGACCAAGAAG CACATCCCGTACCGCGAGCACAAGAGCCTGACGGGCACGGCGCGCTACATGAGCATCAAC ACGCACCTGGGCAAGGAGCAGAGCCGCCGTGATGACCTGGAGGCGCTGGGCCACATGTTC ATGTACTTCCTGCGTGGCAGCCTGCCCTGGCAGGGGCTCAAGGCAGACACGCTCAAGGAG CGCTACCAGAAGATCGGGGACACCAAGCGGGCCACGCCCATTGAGGTGCTCTGTGAGAGC TTCCCAGAGGAGATGGCCACTTACCTGCGCTATGTGCGGCGCCTGGACTTCTTTGAGAAG CCGGACTACGACTACCTGCGCAAACTCTTCACCGACCTCTTTGACCGCAGTGGCTTCGTG TTTGACTATGAGTACGACTGGGCCGGGAAACCCCTGCCCACGCCCATCGGCACGGTCCAC ACCGACCTGCCTTCGCAGCCTCAGGCTCGGGAGAAAGCCCTGCTTCATAGCAAAAACCAG GCACTGAACTCCACCAATGGGGAGCTGAATGCCGATGACCCCACCGCTGGCCACTCCAAC GCACCCATCACAGCCCCCGCAGAGGTGGAGGTGGCTGATGACACCAAGTGCTGCTGTTTC TTCAAGAGGAGAAAGAGAAAATCGCTGCAGCGACACAAGTGACCCTGGGCTGGTGGCCCC TGAATCCTCTCACTGCAGCCCCTCGGGGCCAGCTTGTCCACGGCCGTGTGGCCACAGCCG GATGCAGACTGCAGGCCCAGCAGAGTTGCCGCCCCCCCCACGTGGGGTCACTTCTTTCAC ATAAGACTTTGGTCGAGATTTTTACACCTGTGTCTAGTCCTTCCCTCCAAGAGCATTAAC TATTTAAAACAAGGAACAGAGAAAACCAGAGCGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCAGGTCTACTACTTCGGCCCATGTGGGAAATACAACGCCATGGTGCTGGAGCTGCTC GGGCCCAGCCTGGAGGACCTGTTCGACTTGTGTGACCGCACGTTCACGCTCAAGACGGTG CTCATGATCGCCATCCAGCTGATCACGCGCATGGAGTACGTGCACACCAAGAGCCTCATC TACCGCGACGTGAAGCCCGAGAACTTCCTGGTGGGGCGGCCGGGCACCAAGCGGCAGCAC GCCATCCACATCATCGACTTCGGCCTGGCCAAGGAGTACATCGACCCCGAGACCAAGAAG CACATCCCGTACCGCGAGCACAAGAGCCTGACGGGCACGGCGCGCTACATGAGCATCAAC ACGCACCTGGGCAAGGAGCAGAGCCGCCGTGATGACCTGGAGGCGCTGGGCCACATGTTC ATGTACTTCCTGCGTGGCAGCCTGCCCTGGCAGGGGCTCAAGGCAGACACGCTCAAGGAG CGCTACCAGAAGATCGGGGACACCAAGCGGGCCACGCCCATTGAGGTGCTCTGTGAGAGC TTCCCAGAGGAGATGGCCACTTACCTGCGCTATGTGCGGCGCCTGGACTTCTTTGAGAAG CCGGACTACGACTACCTGCGCAAACTCTTCACCGACCTCTTTGACCGCAGTGGCTTCGTG TTTGACTATGAGTACGACTGGGCCGGGAAACCCCTGCCCACGCCCATCGGCACGGTCCAC ACCGACCTGCCTTCGCAGCCTCAGGCTCGGGAGAAAGCCCTGCTTCATAGCAAAAACCAG GCACTGAACTCCACCAATGGGGAGCTGAATGCCGATGACCCCACCGCTGGCCACTCCAAC GCACCCATCACAGCCCCCGCAGAGGTGGAGGTGGCTGATGACACCAAGTGCTGCTGTTTC TTCAAGAGGAGAAAGAGAAAATCGCTGCAGCGACACAAGTGACCCTGGGCTGGTGGCCCC TGAATCCTCTCACTGCAGCCCCTCGGGGCCAGCTTGTCCACGGCCGTGTGGCCACAGCCG GATGCAGACTGCAGGCCCAGCAGAGTTGCCGCCCCCCCCACGTGGGGTCACTTCTTTCAC ATAAGACTTTGGTCGAGATTTTTACACCTGTGTCTAGTCCTTCCCTCCAAGAGCATTAAC TATTTAAAACAAGGAACAGAGAAAACCAGAGCGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 257-374, - strand, RNAz p=0.655173 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 257-374, - strand, RNAz p=0.655173 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr10 (30204017-30203877) | |
| 1-141, gnl|canFam2|chr30 (31704505-31704684) | |
| 1-141, gnl|danRer3|chr7 (53088361-53088535) | |
| 1-141, gnl|dasNov1|scaffold_6329 (60650-60800) | |
| 1-141, gnl|echTel1|scaffold_317194 (43066-42892) | |
| 1-141, gnl|fr1|chrUn (5251653-5251476) | |
| 1-141, gnl|galGal2|chr10 (1386742-1386911) | |
| 1-141, gnl|hg17|chr15 (62295806-62295987) | |
| 1-141, gnl|Hg17|chr15 (62295954-62295814) | |
| 1-141, gnl|loxAfr1|scaffold_4663 (44930-44751) | |
| 1-141, gnl|mm7|chr9 (66029196-66029016) | |
| 1-141, gnl|Mm7|chr9 (66029047-66029187) | |
| 1-141, gnl|monDom2|scaffold_12 (49280470-49280299) | |
| 1-141, gnl|oryCun1|scaffold_145681 (17129-17295) | |
| 1-141, gnl|panTro1|chr16 (62759397-62759578) | |
| 1-141, gnl|rheMac2|chr7 (42614907-42615088) | |
| 1-141, gnl|rn3|chr8 (70291341-70291161) | |
| 1-141, gnl|tetNig1|chr5 (10799290-10799470) | |
| 1-141, gnl|xenTro1|scaffold_295 (305619-305441) | |
| 148-374, gnl|bosTau2|chr10 (30202522-30202296) | |
| 148-374, gnl|canFam2|chr30 (31702598-31702760) | |
| 148-374, gnl|danRer3|chr7 (53085864-53086033) | |
| 148-374, gnl|dasNov1|scaffold_7616 (39878-39716) | |
| 148-374, gnl|echTel1|scaffold_317194 (43978-43816) | |
| 148-374, gnl|fr1|chrUn (5253000-5252847) | |
| 148-374, gnl|galGal2|chr10 (1383423-1383585) | |
| 148-374, gnl|hg17|chr15 (62293129-62293291) | |
| 148-374, gnl|Hg17|chr15 (62293370-62293144) | |
| 148-374, gnl|loxAfr1|scaffold_4663 (46595-46433) | |
| 148-374, gnl|mm7|chr9 (66031930-66031775) | |
| 148-374, gnl|Mm7|chr9 (66031694-66031920) | |
| 148-374, gnl|monDom2|scaffold_12 (49282514-49282352) | |
| 148-374, gnl|oryCun1|scaffold_145681 (15019-15181) | |
| 148-374, gnl|panTro1|chr16 (62756728-62756890) | |
| 148-374, gnl|rheMac2|chr7 (42612228-42612390) | |
| 148-374, gnl|rn3|chr8 (70294007-70293852) | |
| 148-374, gnl|tetNig1|chr5 (10798575-10798725) | |
| 148-374, gnl|xenTro1|scaffold_295 (306367-306213) | |
| 545-688, gnl|bosTau2|chr10 (30192051-30191908) | |
| 545-688, gnl|canFam2|chr30 (31695158-31695346) | |
| 545-688, gnl|danRer3|chr7 (53081493-53081676) | |
| 545-688, gnl|dasNov1|scaffold_7616 (47719-47530) | |
| 545-688, gnl|echTel1|scaffold_204333 (1059-893) | |
| 545-688, gnl|fr1|chrUn (5253595-5253408) | |
| 545-688, gnl|galGal2|chr10 (1377528-1377706) | |
| 545-688, gnl|hg17|chr15 (62283684-62283873) | |
| 545-688, gnl|Hg17|chr15 (62283844-62283701) | |
| 545-688, gnl|loxAfr1|scaffold_116818 (8273-8439) | |
| 545-688, gnl|mm7|chr9 (66040222-66040033) | |
| 545-688, gnl|Mm7|chr9 (66040060-66040203) | |
| 545-688, gnl|monDom2|scaffold_12 (49289395-49289187) | |
| 545-688, gnl|oryCun1|scaffold_96762 (878-1067) | |
| 545-688, gnl|panTro1|chr16 (62747239-62747428) | |
| 545-688, gnl|rheMac2|chr7 (42602706-42602895) | |
| 545-688, gnl|rn3|chr8 (70302596-70302407) | |
| 545-688, gnl|tetNig1|chr5 (10798009-10798177) | |
| 545-688, gnl|xenTro1|scaffold_2 (4278507-4278678) | |
| 778-909, gnl|bosTau2|chr10 (30169510-30169380) | |
| 778-909, gnl|Hg17|chr15 (62259709-62259579) | |
| 778-909, gnl|Mm7|chr9 (66061877-66062007) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr10 (30204017-30203877) | |
| 1-141, gnl|canFam2|chr30 (31704505-31704684) | |
| 1-141, gnl|danRer3|chr7 (53088361-53088535) | |
| 1-141, gnl|dasNov1|scaffold_6329 (60650-60800) | |
| 1-141, gnl|echTel1|scaffold_317194 (43066-42892) | |
| 1-141, gnl|fr1|chrUn (5251653-5251476) | |
| 1-141, gnl|galGal2|chr10 (1386742-1386911) | |
| 1-141, gnl|hg17|chr15 (62295806-62295987) | |
| 1-141, gnl|Hg17|chr15 (62295954-62295814) | |
| 1-141, gnl|loxAfr1|scaffold_4663 (44930-44751) | |
| 1-141, gnl|mm7|chr9 (66029196-66029016) | |
| 1-141, gnl|Mm7|chr9 (66029047-66029187) | |
| 1-141, gnl|monDom2|scaffold_12 (49280470-49280299) | |
| 1-141, gnl|oryCun1|scaffold_145681 (17129-17295) | |
| 1-141, gnl|panTro1|chr16 (62759397-62759578) | |
| 1-141, gnl|rheMac2|chr7 (42614907-42615088) | |
| 1-141, gnl|rn3|chr8 (70291341-70291161) | |
| 1-141, gnl|tetNig1|chr5 (10799290-10799470) | |
| 1-141, gnl|xenTro1|scaffold_295 (305619-305441) | |
| 148-374, gnl|bosTau2|chr10 (30202522-30202296) | |
| 148-374, gnl|canFam2|chr30 (31702598-31702760) | |
| 148-374, gnl|danRer3|chr7 (53085864-53086033) | |
| 148-374, gnl|dasNov1|scaffold_7616 (39878-39716) | |
| 148-374, gnl|echTel1|scaffold_317194 (43978-43816) | |
| 148-374, gnl|fr1|chrUn (5253000-5252847) | |
| 148-374, gnl|galGal2|chr10 (1383423-1383585) | |
| 148-374, gnl|hg17|chr15 (62293129-62293291) | |
| 148-374, gnl|Hg17|chr15 (62293370-62293144) | |
| 148-374, gnl|loxAfr1|scaffold_4663 (46595-46433) | |
| 148-374, gnl|mm7|chr9 (66031930-66031775) | |
| 148-374, gnl|Mm7|chr9 (66031694-66031920) | |
| 148-374, gnl|monDom2|scaffold_12 (49282514-49282352) | |
| 148-374, gnl|oryCun1|scaffold_145681 (15019-15181) | |
| 148-374, gnl|panTro1|chr16 (62756728-62756890) | |
| 148-374, gnl|rheMac2|chr7 (42612228-42612390) | |
| 148-374, gnl|rn3|chr8 (70294007-70293852) | |
| 148-374, gnl|tetNig1|chr5 (10798575-10798725) | |
| 148-374, gnl|xenTro1|scaffold_295 (306367-306213) | |
| 545-688, gnl|bosTau2|chr10 (30192051-30191908) | |
| 545-688, gnl|canFam2|chr30 (31695158-31695346) | |
| 545-688, gnl|danRer3|chr7 (53081493-53081676) | |
| 545-688, gnl|dasNov1|scaffold_7616 (47719-47530) | |
| 545-688, gnl|echTel1|scaffold_204333 (1059-893) | |
| 545-688, gnl|fr1|chrUn (5253595-5253408) | |
| 545-688, gnl|galGal2|chr10 (1377528-1377706) | |
| 545-688, gnl|hg17|chr15 (62283684-62283873) | |
| 545-688, gnl|Hg17|chr15 (62283844-62283701) | |
| 545-688, gnl|loxAfr1|scaffold_116818 (8273-8439) | |
| 545-688, gnl|mm7|chr9 (66040222-66040033) | |
| 545-688, gnl|Mm7|chr9 (66040060-66040203) | |
| 545-688, gnl|monDom2|scaffold_12 (49289395-49289187) | |
| 545-688, gnl|oryCun1|scaffold_96762 (878-1067) | |
| 545-688, gnl|panTro1|chr16 (62747239-62747428) | |
| 545-688, gnl|rheMac2|chr7 (42602706-42602895) | |
| 545-688, gnl|rn3|chr8 (70302596-70302407) | |
| 545-688, gnl|tetNig1|chr5 (10798009-10798177) | |
| 545-688, gnl|xenTro1|scaffold_2 (4278507-4278678) | |
| 778-909, gnl|bosTau2|chr10 (30169510-30169380) | |
| 778-909, gnl|Hg17|chr15 (62259709-62259579) | |
| 778-909, gnl|Mm7|chr9 (66061877-66062007) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ese (0.253004) | |
| cty (0.20816) | |
| ton (0.1755) | |
| cag (0.151194) | |
| cov (0.132153) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| cty (0.20816) | |
| ton (0.1755) | |
| cag (0.151194) | |
| cov (0.132153) | |
| cly (0.120642) | |
| clu (0.119646) |