Ss1.1-Tra1-TCH01C030025.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGAGATAATTGATGAACGCACAAGAGAGCGGCTGGTGTATGAGGTGCGGCAGAAGTGC CGGAACATCGAGGACATTTGCATCTCCTGTGGAAGCCTCAACGTCACCCTGGAACACCCT CTCTTCATCGGAGGAATGTGCCAAAACTGCAAGAACTGCTTCCTGGAGTGCGCGTATCAG TACGACGATGACGGCTACCAGTCCTACTGCACCATCTGCTGCGGGGGCCGCGAGGTGCTC ATGTGCGGGAACAACAATTGCTGCAGGTGCTTTTGCGTGGAGTGCGTGGATCTCTTGGTG GGGCCGGGGGCCGCGCAGGCAGCCATTAAGGAAGACCCCTGGAACTGCTACATGTGCGGG CACAAGGGCACCTACGGGCTGCTCCGGAGGCGGGACGACTGGCCCTCTCGGCTCCAGATG TTCTTCGCCAATAACCACGACCAGGAATTTGACCCTCCGAAGGTCTACCCACCTGTCCCA GCCGAGAAGAGGAAGCCCATCCGGGTGCTGTCTCTATTTGATGGAATCGCTACAGGGCTT CTGGTGCTGAAGGACTTGGGCATCCAGGTGGATCGCTACATCGCCTCCGAGGTGTGCGAG GACTCCATCACCGTGGGCATGGTGCGGCACCAGGGCAAGATCATGTACGTCGGGGACGTC CGCAGCGTCACGCAGAAGCATATCCAGGAGTGGGGCCCATTCGATCTGGTGATTGGGGGC AGTCCCTGCAATGACCTCTCCATCGTCAACCCCGCCCGCAAGGGACTCTACGAGGGCACG GGCCGGCTCTTCTTTGAGTTCTACCGCCTCCTGCATGATGCGCGGCCCAAGGAGGGAGAT GATCGCCCCTTCTTCTGGCTCTTTGAGAATGTGGTGGCCATGGGCGTTAGTGACAAGAGG GACATCTCGCGATTTCTCGAGTCCAACCCTGTGATGATCGACGCCAAAGAAGTGTCCGCT GCACACAGGGCCCGCTACTTCTGGGGAAACCTTCCTGGTATGAACAGGCCGTTGGCATCC ACTGTGAATGATAAGCTGGAGCTGCAGGAGTGTCTGGAGCACGGCAGAATAGCCAAGTTC AGCAAAGTGAGGACCATTACTACGAGGTCGAACTCCATAAAGCAGGGCAAAGACCAGCAT TTCCCCGTCTTCATGAACGAGAAAGAGGACATCCTGTGGTGCACTGAGATGGAAAGGGTG TTCGGCTTCCCCGTCCACTATACCGACGTCTCCAACATGAGCCGCTTGGCGAGGCAGAGA CTGCTGGGCCGGTCGTGGAGCGTGCCGGTCATCCGCCACCTCTTCGCTCCGCTGAAGGAA TATTTTGCTTGTGTGTAAGGGACGTGAGGGCAAACCGAGGTAGTGACACAAAGTTGTTAA GCAAACAAACAAAAAACAAAAAACACAACAAAACACCAAGAACATGAAGATGGAGAGAAG TATCAGCACCCAGAAGAGAAAAAGGAATTTAAAACAAACAAAACGCAGGCGGAAATTCCG GAGGGCTTTGCCTTGGACAAAGGGTTGGACATCATCTCCTGATTTTTCAATGTTACTCTT CAGTCCTATTTAAAAACAAAACCAAGCTCCCTCCCCAGCCCACCCCCCCCTTTTTGGGTG AAACCTTTTGTTTTCTACTCTTTTCAGAGGGGTTTTCTGTTTGTTTGGGTTTTTGTTTCT TGCTGTGACTGAAACAAGAGGGTTTATTGCAGCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGAGATAATTGATGAACGCACAAGAGAGCGGCTGGTGTATGAGGTGCGGCAGAAGTGC CGGAACATCGAGGACATTTGCATCTCCTGTGGAAGCCTCAACGTCACCCTGGAACACCCT CTCTTCATCGGAGGAATGTGCCAAAACTGCAAGAACTGCTTCCTGGAGTGCGCGTATCAG TACGACGATGACGGCTACCAGTCCTACTGCACCATCTGCTGCGGGGGCCGCGAGGTGCTC ATGTGCGGGAACAACAATTGCTGCAGGTGCTTTTGCGTGGAGTGCGTGGATCTCTTGGTG GGGCCGGGGGCCGCGCAGGCAGCCATTAAGGAAGACCCCTGGAACTGCTACATGTGCGGG CACAAGGGCACCTACGGGCTGCTCCGGAGGCGGGACGACTGGCCCTCTCGGCTCCAGATG TTCTTCGCCAATAACCACGACCAGGAATTTGACCCTCCGAAGGTCTACCCACCTGTCCCA GCCGAGAAGAGGAAGCCCATCCGGGTGCTGTCTCTATTTGATGGAATCGCTACAGGGCTT CTGGTGCTGAAGGACTTGGGCATCCAGGTGGATCGCTACATCGCCTCCGAGGTGTGCGAG GACTCCATCACCGTGGGCATGGTGCGGCACCAGGGCAAGATCATGTACGTCGGGGACGTC CGCAGCGTCACGCAGAAGCATATCCAGGAGTGGGGCCCATTCGATCTGGTGATTGGGGGC AGTCCCTGCAATGACCTCTCCATCGTCAACCCCGCCCGCAAGGGACTCTACGAGGGCACG GGCCGGCTCTTCTTTGAGTTCTACCGCCTCCTGCATGATGCGCGGCCCAAGGAGGGAGAT GATCGCCCCTTCTTCTGGCTCTTTGAGAATGTGGTGGCCATGGGCGTTAGTGACAAGAGG GACATCTCGCGATTTCTCGAGTCCAACCCTGTGATGATCGACGCCAAAGAAGTGTCCGCT GCACACAGGGCCCGCTACTTCTGGGGAAACCTTCCTGGTATGAACAGGCCGTTGGCATCC ACTGTGAATGATAAGCTGGAGCTGCAGGAGTGTCTGGAGCACGGCAGAATAGCCAAGTTC AGCAAAGTGAGGACCATTACTACGAGGTCGAACTCCATAAAGCAGGGCAAAGACCAGCAT TTCCCCGTCTTCATGAACGAGAAAGAGGACATCCTGTGGTGCACTGAGATGGAAAGGGTG TTCGGCTTCCCCGTCCACTATACCGACGTCTCCAACATGAGCCGCTTGGCGAGGCAGAGA CTGCTGGGCCGGTCGTGGAGCGTGCCGGTCATCCGCCACCTCTTCGCTCCGCTGAAGGAA TATTTTGCTTGTGTGTAAGGGACGTGAGGGCAAACCGAGGTAGTGACACAAAGTTGTTAA GCAAACAAACAAAAAACAAAAAACACAACAAAACACCAAGAACATGAAGATGGAGAGAAG TATCAGCACCCAGAAGAGAAAAAGGAATTTAAAACAAACAAAACGCAGGCGGAAATTCCG GAGGGCTTTGCCTTGGACAAAGGGTTGGACATCATCTCCTGATTTTTCAATGTTACTCTT CAGTCCTATTTAAAAACAAAACCAAGCTCCCTCCCCAGCCCACCCCCCCCTTTTTGGGTG AAACCTTTTGTTTTCTACTCTTTTCAGAGGGGTTTTCTGTTTGTTTGGGTTTTTGTTTCT TGCTGTGACTGAAACAAGAGGGTTTATTGCAGCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1601-1716, - strand, RNAz p=0.595623 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1601-1716, - strand, RNAz p=0.595623 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 264-449, gnl|bosTau2|chr11 (53966167-53965982) | |
| 264-449, gnl|Hg17|chr2 (25378861-25378676) | |
| 264-449, gnl|Mm7|chr12 (3818236-3818421) | |
| 514-681, gnl|bosTau2|chr11 (53963898-53963733) | |
| 514-681, gnl|canFam2|chr17 (22479559-22479720) | |
| 514-681, gnl|danRer3|chr17 (45220538-45220375) | |
| 514-681, gnl|dasNov1|scaffold_69056 (4537-4656) | |
| 514-681, gnl|echTel1|scaffold_184473 (4589-4467) | |
| 514-681, gnl|fr1|chrUn (2259091-2258930) | |
| 514-681, gnl|galGal2|chrUn (54131968-54132135) | |
| 514-681, gnl|hg17|chr2 (25376066-25376227) | |
| 514-681, gnl|Hg17|chr2 (25376247-25376082) | |
| 514-681, gnl|loxAfr1|scaffold_161238 (4690-4529) | |
| 514-681, gnl|mm7|chr12 (3820084-3819926) | |
| 514-681, gnl|Mm7|chr12 (3819904-3820069) | |
| 514-681, gnl|monDom2|scaffold_1 (151824559-151824396) | |
| 514-681, gnl|oryCun1|scaffold_171638 (14649-14791) | |
| 514-681, gnl|panTro1|chr12 (26271084-26271245) | |
| 514-681, gnl|rheMac2|chr13 (25173571-25173732) | |
| 514-681, gnl|rn3|chr6 (26875338-26875180) | |
| 514-681, gnl|tetNig1|chr10 (10872310-10872160) | |
| 514-681, gnl|xenTro1|scaffold_843 (313969-314119) | |
| 766-921, gnl|bosTau2|chr11 (53962663-53962508) | |
| 766-921, gnl|Hg17|chr2 (25374977-25374822) | |
| 766-921, gnl|Mm7|chr12 (3821034-3821189) | |
| 1195-1548, gnl|bosTau2|chr11 (53957420-53957061) | |
| 1195-1548, gnl|Hg17|chr2 (25368942-25368592) | |
| 1195-1548, gnl|Mm7|chr12 (3825979-3826334) | |
| 1575-1716, gnl|bosTau2|chr11 (53957010-53956865) | |
| 1575-1716, gnl|Hg17|chr2 (25368591-25368422) | |
| 1575-1716, gnl|Mm7|chr12 (3826335-3826500) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 264-449, gnl|bosTau2|chr11 (53966167-53965982) | |
| 264-449, gnl|Hg17|chr2 (25378861-25378676) | |
| 264-449, gnl|Mm7|chr12 (3818236-3818421) | |
| 514-681, gnl|bosTau2|chr11 (53963898-53963733) | |
| 514-681, gnl|canFam2|chr17 (22479559-22479720) | |
| 514-681, gnl|danRer3|chr17 (45220538-45220375) | |
| 514-681, gnl|dasNov1|scaffold_69056 (4537-4656) | |
| 514-681, gnl|echTel1|scaffold_184473 (4589-4467) | |
| 514-681, gnl|fr1|chrUn (2259091-2258930) | |
| 514-681, gnl|galGal2|chrUn (54131968-54132135) | |
| 514-681, gnl|hg17|chr2 (25376066-25376227) | |
| 514-681, gnl|Hg17|chr2 (25376247-25376082) | |
| 514-681, gnl|loxAfr1|scaffold_161238 (4690-4529) | |
| 514-681, gnl|mm7|chr12 (3820084-3819926) | |
| 514-681, gnl|Mm7|chr12 (3819904-3820069) | |
| 514-681, gnl|monDom2|scaffold_1 (151824559-151824396) | |
| 514-681, gnl|oryCun1|scaffold_171638 (14649-14791) | |
| 514-681, gnl|panTro1|chr12 (26271084-26271245) | |
| 514-681, gnl|rheMac2|chr13 (25173571-25173732) | |
| 514-681, gnl|rn3|chr6 (26875338-26875180) | |
| 514-681, gnl|tetNig1|chr10 (10872310-10872160) | |
| 514-681, gnl|xenTro1|scaffold_843 (313969-314119) | |
| 766-921, gnl|bosTau2|chr11 (53962663-53962508) | |
| 766-921, gnl|Hg17|chr2 (25374977-25374822) | |
| 766-921, gnl|Mm7|chr12 (3821034-3821189) | |
| 1195-1548, gnl|bosTau2|chr11 (53957420-53957061) | |
| 1195-1548, gnl|Hg17|chr2 (25368942-25368592) | |
| 1195-1548, gnl|Mm7|chr12 (3825979-3826334) | |
| 1575-1716, gnl|bosTau2|chr11 (53957010-53956865) | |
| 1575-1716, gnl|Hg17|chr2 (25368591-25368422) | |
| 1575-1716, gnl|Mm7|chr12 (3826335-3826500) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fty (0.351679) | |
| cte (0.29274) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| cte (0.29274) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| eje (0.0988338) | |
| ldo (0.0970026) |