Ss1.1-Tra1-TCH01C030031.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGTAGGTTCCAGAAGGCGGCGCGTGCGGTTGGGAACGCGGAGCAGACGGAGTCTATTCA ACGGGGTTCCGGGCCGGACTATGGAGCAGGTAAATGAGCTAAAAGAGAAGGGCAACAAGG CCCTGAGTGCCGGCAACATCGACGACGCGTTACAGTGCTACTCTGAAGCCATTAAGTTAG ACCCCCAGAACCATGTGCTCTACAGCAATCGCTCCGCAGCCTATGCCAAGAAAGGAGACT ATCAGAAGGCTTACGAGGATGGCTGCAAAACCGTCGACCTAAAGCCTGACTGGGGCAAGG GCTATTCCCGAAAAGCAGCGGCTCTTGAGTTCTTAAACCGATTTGAAGAAGCCAAGCGAA CGTATGAGGAAGGTTTAAAACATGAAGCAAACAACCCTCAGCTCAAAGAAGGTTTGCAGA ATATGGAGGCCCGATTGGCAGAGAGGAAGTTCATGAATCCTTTCAACATGCCGAATCTGT ACCAGAAGTTGGAGAGCGATCCCAGGACAAAGGCTCTGCTCGCCGATCCTTCCTACCGGG AACTGATAGAGCAGCTGCGAAACAAGCCGTCGGACCTGGGCACGAAACTGCAAGATCCTC GGATCATGACTACTCTGAGCGTCCTCCTTGGAGTCGACCTGGGCAGCATGGATGAGGAGG AGGAAGTTGCAACACCTCCACCGCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAGCCCA TGGAAGAAGATCTTCCAGAGAATAAGAAGCAGGCCCTGAAAGAGAAGGAGCTGGGGAACG AAGCCTATAAGAAGAAGGACTTTGACACGGCCTTGAAACACTACGACCGAGCCAAGGACC TGGACCCCACCAACATGACTTACATGACCAACCAAGCAGCCGTGTACTTCGAAAAGGGCG ACTACGGTAAATGCCGGGAGCTCTGTGAGAAGGCCATCGAGGTGGGACGAGAGAACCGAG AGGACTACCGCCAGATTGCCAAAGCTTATGCTCGAATTGGCAACTCCTACTTCAAAGAAG AAAAGTACAAGGATGCCATCCATTTCTACAATAAGTCTCTGGCAGAGCACCGAACTCCAG ATGTGCTTAAGAAGTGCCAACAGGCAGAGAAAATCCTAAAGGAGCAAGAGCGACTGGCCT ACATAAACCCTGACCTGGCCTTGGAGGAGAAGAACAAAGGCAATGAATGTTTTCAGAAAG GGGATTATCCCCAGGCCATGAAGCATTATACAGAAGCCATCAAACGGAACCCAAAAGATG CCAAATTATACAGCAATCGAGCTGCCTGCTACACCAAACTCTTGGAGTTCCAACTGGCGC TCAAGGACTGTGAGGAGTGCATCCAGCTAGAACCTACCTTCATCAAGGGCTATACCCGGA AAGCAGCTGCCCTGGAAGCCATGAAAGACTACACGAAAGCCATGGACGTCTACCAGAAGG CGCTCGACCTGGATGCCAACTGTAAGGAGGCCGCCGACGGTTACCAGCGCTGCGTGATGG CCCAGTACAACCGACACGACAGCCCGGAAGATGTGAAGCGGCGGGCCATGGCCGACCCTG AGGTGCAGCAGATCATGAGTGACCCAGCCATGCGGCTCATCCTGGAACAGATGCAGAAGG ACCCTCAGGCGCTCAGCGAACACCTAAAGAATCCTGTAATAGCGCAGAAGATCCAGAAGC TGATGGACGTGGGTCTGATCGCAATTCGGTGATGACATGTTCGTCATCCCCCTTCCCTTC GTCCTCCTGTGGAAAGAGGAGCTGGGACGGCGGCACGCAGCACGGAGCAGAAGGGAGAGT AGGGGAAACAAGCGAACAACTGCTATATATTTATACAGACCCCTGTGGACGATGCAGAGA CTTACACTCCGTTACTCGTGCAGCCGCTGCCTCTGGGCCCTCCCGGCACACGCATGGTCT CTTCTGCTGCCCTCGAGTTCCATGTCTCCTTCCCCTGCCCCCAGTCGCTGTCTCAGCTGC TCTCCCATAGTTGGTTATTTTTTATTTGGGACAGTGGGCTTGTATGGGGAGGGGAGGGTG TGCTTCCCAACCTCAGGTCCCAGCTGTTCTCACATTGTTAACTCCACGTCCTCTTCTCCA ATAAAACAAGCCAGTCAGGCGTGGTTATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGTAGGTTCCAGAAGGCGGCGCGTGCGGTTGGGAACGCGGAGCAGACGGAGTCTATTCA ACGGGGTTCCGGGCCGGACTATGGAGCAGGTAAATGAGCTAAAAGAGAAGGGCAACAAGG CCCTGAGTGCCGGCAACATCGACGACGCGTTACAGTGCTACTCTGAAGCCATTAAGTTAG ACCCCCAGAACCATGTGCTCTACAGCAATCGCTCCGCAGCCTATGCCAAGAAAGGAGACT ATCAGAAGGCTTACGAGGATGGCTGCAAAACCGTCGACCTAAAGCCTGACTGGGGCAAGG GCTATTCCCGAAAAGCAGCGGCTCTTGAGTTCTTAAACCGATTTGAAGAAGCCAAGCGAA CGTATGAGGAAGGTTTAAAACATGAAGCAAACAACCCTCAGCTCAAAGAAGGTTTGCAGA ATATGGAGGCCCGATTGGCAGAGAGGAAGTTCATGAATCCTTTCAACATGCCGAATCTGT ACCAGAAGTTGGAGAGCGATCCCAGGACAAAGGCTCTGCTCGCCGATCCTTCCTACCGGG AACTGATAGAGCAGCTGCGAAACAAGCCGTCGGACCTGGGCACGAAACTGCAAGATCCTC GGATCATGACTACTCTGAGCGTCCTCCTTGGAGTCGACCTGGGCAGCATGGATGAGGAGG AGGAAGTTGCAACACCTCCACCGCCACCTCCTCCCAAAAAGGAGCCCAAGCCAGAGCCCA TGGAAGAAGATCTTCCAGAGAATAAGAAGCAGGCCCTGAAAGAGAAGGAGCTGGGGAACG AAGCCTATAAGAAGAAGGACTTTGACACGGCCTTGAAACACTACGACCGAGCCAAGGACC TGGACCCCACCAACATGACTTACATGACCAACCAAGCAGCCGTGTACTTCGAAAAGGGCG ACTACGGTAAATGCCGGGAGCTCTGTGAGAAGGCCATCGAGGTGGGACGAGAGAACCGAG AGGACTACCGCCAGATTGCCAAAGCTTATGCTCGAATTGGCAACTCCTACTTCAAAGAAG AAAAGTACAAGGATGCCATCCATTTCTACAATAAGTCTCTGGCAGAGCACCGAACTCCAG ATGTGCTTAAGAAGTGCCAACAGGCAGAGAAAATCCTAAAGGAGCAAGAGCGACTGGCCT ACATAAACCCTGACCTGGCCTTGGAGGAGAAGAACAAAGGCAATGAATGTTTTCAGAAAG GGGATTATCCCCAGGCCATGAAGCATTATACAGAAGCCATCAAACGGAACCCAAAAGATG CCAAATTATACAGCAATCGAGCTGCCTGCTACACCAAACTCTTGGAGTTCCAACTGGCGC TCAAGGACTGTGAGGAGTGCATCCAGCTAGAACCTACCTTCATCAAGGGCTATACCCGGA AAGCAGCTGCCCTGGAAGCCATGAAAGACTACACGAAAGCCATGGACGTCTACCAGAAGG CGCTCGACCTGGATGCCAACTGTAAGGAGGCCGCCGACGGTTACCAGCGCTGCGTGATGG CCCAGTACAACCGACACGACAGCCCGGAAGATGTGAAGCGGCGGGCCATGGCCGACCCTG AGGTGCAGCAGATCATGAGTGACCCAGCCATGCGGCTCATCCTGGAACAGATGCAGAAGG ACCCTCAGGCGCTCAGCGAACACCTAAAGAATCCTGTAATAGCGCAGAAGATCCAGAAGC TGATGGACGTGGGTCTGATCGCAATTCGGTGATGACATGTTCGTCATCCCCCTTCCCTTC GTCCTCCTGTGGAAAGAGGAGCTGGGACGGCGGCACGCAGCACGGAGCAGAAGGGAGAGT AGGGGAAACAAGCGAACAACTGCTATATATTTATACAGACCCCTGTGGACGATGCAGAGA CTTACACTCCGTTACTCGTGCAGCCGCTGCCTCTGGGCCCTCCCGGCACACGCATGGTCT CTTCTGCTGCCCTCGAGTTCCATGTCTCCTTCCCCTGCCCCCAGTCGCTGTCTCAGCTGC TCTCCCATAGTTGGTTATTTTTTATTTGGGACAGTGGGCTTGTATGGGGAGGGGAGGGTG TGCTTCCCAACCTCAGGTCCCAGCTGTTCTCACATTGTTAACTCCACGTCCTCTTCTCCA ATAAAACAAGCCAGTCAGGCGTGGTTATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 611-835, - strand, RNAz p=0.99773 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 611-835, - strand, RNAz p=0.99773 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 28-1090, gnl|bosTau2|chr4 (27352838-27353915) | |
| 28-1090, gnl|Hg17|chrX (85147547-85146427) | |
| 28-1090, gnl|Mm7|chr16 (16401969-16403023) | |
| 87-300, gnl|bosTau2|chr29 (33314523-33314736) | |
| 87-300, gnl|Hg17|chr11 (63717123-63717336) | |
| 87-300, gnl|Mm7|chr19 (6855571-6855358) | |
| 584-753, gnl|bosTau2|chr29 (33316401-33316570) | |
| 584-753, gnl|Hg17|chr11 (63719693-63719862) | |
| 584-753, gnl|Mm7|chr19 (6852513-6852344) | |
| 876-982, gnl|bosTau2|chr29 (33317774-33317880) | |
| 876-982, gnl|canFam2|chr18 (55887823-55887738) | |
| 876-982, gnl|danRer3|chr9 (41117604-41117689) | |
| 876-982, gnl|echTel1|scaffold_283541 (39763-39685) | |
| 876-982, gnl|fr1|chrUn (315272414-315272499) | |
| 876-982, gnl|hg17|chr11 (63721529-63721614) | |
| 876-982, gnl|Hg17|chr11 (63721537-63721643) | |
| 876-982, gnl|loxAfr1|scaffold_78378 (89-4) | |
| 876-982, gnl|mm7|chr19 (6848882-6848797) | |
| 876-982, gnl|Mm7|chr19 (6848872-6848766) | |
| 876-982, gnl|oryCun1|scaffold_164077 (4521-4436) | |
| 876-982, gnl|panTro1|chr9 (64705427-64705512) | |
| 876-982, gnl|rheMac2|chr14 (10234359-10234274) | |
| 876-982, gnl|rn3|chr1 (209859276-209859193) | |
| 876-982, gnl|tetNig1|chr7 (2355367-2355451) | |
| 876-982, gnl|xenTro1|scaffold_684 (215253-215338) | |
| 1102-1326, gnl|bosTau2|chr29 (33319324-33319548) | |
| 1102-1326, gnl|Hg17|chr11 (63723986-63724342) | |
| 1102-1326, gnl|Mm7|chr19 (6846254-6845178) | |
| 1465-1639, gnl|bosTau2|chr29 (33322441-33322615) | |
| 1465-1639, gnl|canFam2|chr18 (55881394-55881223) | |
| 1465-1639, gnl|danRer3|chr9 (41122855-41123011) | |
| 1465-1639, gnl|echTel1|scaffold_322503 (44255-44409) | |
| 1465-1639, gnl|fr1|chrUn (315274207-315274379) | |
| 1465-1639, gnl|hg17|chr11 (63727478-63727649) | |
| 1465-1639, gnl|Hg17|chr11 (63727496-63727670) | |
| 1465-1639, gnl|loxAfr1|scaffold_7936 (82283-82454) | |
| 1465-1639, gnl|mm7|chr19 (6841708-6841537) | |
| 1465-1639, gnl|Mm7|chr19 (6841688-6841514) | |
| 1465-1639, gnl|oryCun1|scaffold_164077 (1187-1019) | |
| 1465-1639, gnl|panTro1|chr9 (64712175-64712346) | |
| 1465-1639, gnl|rheMac2|chr14 (10226435-10226264) | |
| 1465-1639, gnl|rn3|chr1 (209853041-209852870) | |
| 1465-1639, gnl|tetNig1|chr7 (2356597-2356769) | |
| 1465-1639, gnl|xenTro1|scaffold_684 (221782-221953) | |
| 1640-1948, gnl|bosTau2|chr29 (33323061-33323368) | |
| 1640-1948, gnl|Hg17|chr11 (63728102-63728436) | |
| 1640-1948, gnl|Mm7|chr19 (6841035-6840723) | |
| 2031-2159, gnl|bosTau2|chr4 (27354974-27355102) | |
| 2031-2159, gnl|Hg17|chrX (85145532-85145426) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-1090, gnl|bosTau2|chr4 (27352838-27353915) | |
| 28-1090, gnl|Hg17|chrX (85147547-85146427) | |
| 28-1090, gnl|Mm7|chr16 (16401969-16403023) | |
| 87-300, gnl|bosTau2|chr29 (33314523-33314736) | |
| 87-300, gnl|Hg17|chr11 (63717123-63717336) | |
| 87-300, gnl|Mm7|chr19 (6855571-6855358) | |
| 584-753, gnl|bosTau2|chr29 (33316401-33316570) | |
| 584-753, gnl|Hg17|chr11 (63719693-63719862) | |
| 584-753, gnl|Mm7|chr19 (6852513-6852344) | |
| 876-982, gnl|bosTau2|chr29 (33317774-33317880) | |
| 876-982, gnl|canFam2|chr18 (55887823-55887738) | |
| 876-982, gnl|danRer3|chr9 (41117604-41117689) | |
| 876-982, gnl|echTel1|scaffold_283541 (39763-39685) | |
| 876-982, gnl|fr1|chrUn (315272414-315272499) | |
| 876-982, gnl|hg17|chr11 (63721529-63721614) | |
| 876-982, gnl|Hg17|chr11 (63721537-63721643) | |
| 876-982, gnl|loxAfr1|scaffold_78378 (89-4) | |
| 876-982, gnl|mm7|chr19 (6848882-6848797) | |
| 876-982, gnl|Mm7|chr19 (6848872-6848766) | |
| 876-982, gnl|oryCun1|scaffold_164077 (4521-4436) | |
| 876-982, gnl|panTro1|chr9 (64705427-64705512) | |
| 876-982, gnl|rheMac2|chr14 (10234359-10234274) | |
| 876-982, gnl|rn3|chr1 (209859276-209859193) | |
| 876-982, gnl|tetNig1|chr7 (2355367-2355451) | |
| 876-982, gnl|xenTro1|scaffold_684 (215253-215338) | |
| 1102-1326, gnl|bosTau2|chr29 (33319324-33319548) | |
| 1102-1326, gnl|Hg17|chr11 (63723986-63724342) | |
| 1102-1326, gnl|Mm7|chr19 (6846254-6845178) | |
| 1465-1639, gnl|bosTau2|chr29 (33322441-33322615) | |
| 1465-1639, gnl|canFam2|chr18 (55881394-55881223) | |
| 1465-1639, gnl|danRer3|chr9 (41122855-41123011) | |
| 1465-1639, gnl|echTel1|scaffold_322503 (44255-44409) | |
| 1465-1639, gnl|fr1|chrUn (315274207-315274379) | |
| 1465-1639, gnl|hg17|chr11 (63727478-63727649) | |
| 1465-1639, gnl|Hg17|chr11 (63727496-63727670) | |
| 1465-1639, gnl|loxAfr1|scaffold_7936 (82283-82454) | |
| 1465-1639, gnl|mm7|chr19 (6841708-6841537) | |
| 1465-1639, gnl|Mm7|chr19 (6841688-6841514) | |
| 1465-1639, gnl|oryCun1|scaffold_164077 (1187-1019) | |
| 1465-1639, gnl|panTro1|chr9 (64712175-64712346) | |
| 1465-1639, gnl|rheMac2|chr14 (10226435-10226264) | |
| 1465-1639, gnl|rn3|chr1 (209853041-209852870) | |
| 1465-1639, gnl|tetNig1|chr7 (2356597-2356769) | |
| 1465-1639, gnl|xenTro1|scaffold_684 (221782-221953) | |
| 1640-1948, gnl|bosTau2|chr29 (33323061-33323368) | |
| 1640-1948, gnl|Hg17|chr11 (63728102-63728436) | |
| 1640-1948, gnl|Mm7|chr19 (6841035-6840723) | |
| 2031-2159, gnl|bosTau2|chr4 (27354974-27355102) | |
| 2031-2159, gnl|Hg17|chrX (85145532-85145426) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| ece (0.45861) | |
| ton (0.351) | |
| nco (0.323468) | |
| nbm (0.297974) | |
| eje (0.296501) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| ton (0.351) | |
| nco (0.323468) | |
| nbm (0.297974) | |
| eje (0.296501) | |
| eep (0.245128) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |