Ss1.1-Tra1-TCH01C030079.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTCGGCTTTGAAGTGATTTATTGTTCACTGGGGACACAGGCGGGCTGGAGCCC AGGACAGGTCCGGCTGGGGAGCCCGCTCCCCGGTGTGGCCTCGCCGAGCCCACGGCCTGG GCCGAGGGGAAGAGCGGCTTGTCCTTCCGCGTGAAGGAGCAGGAGGTTCCCTGAGAAAAG GCGTTTCCTTAATGGGCACGAGTCCAGGCGTCGGCGGGCAGGCCTGGAGCCTGGGGCTGC AGGTGCCCCTCAGGTCAGGGCGCTGCCCACGGCCTCGGGGAGGCCACCCAGCGGCGCTGG CCCCGCCTGCGGAGGTTCCTGCGGCCGCAGCTGGGCCCCCTTCCAGGCCAGAGACTTCTC CAGTTTGGTTTTAAAAAGTAGCCCGTGACCTGGGCAGTCGGCGGTCTCCCTGAAAGCGCG CTTCTTGCAGCAGCCCCGGCACAGGTTAAACACACACCGGTTGCCCTTTGGGTTCCCACA TTGATCACACTTCGCGTATTTTGGTTTCAGCGAGGGGTCAAAGGTCTTGTGTGGGTTCCT CAGCTGCTTCTTCTGCTTGTTCTTGGACAGGGCCTCTGTGCTGCCCTCCTCCTCCAGGGC CCGCTTGCTGCGGGCACCCCCGTTCTCCTTGCTCCCCTCCTGGGGCCCTGGCCGGAAGTA AGGCTGGCAGATCCAGTGGAAGAAAGGCAGGCCGCCCGAGGGTTTCTCTCCCTCCTTCTG CCTGGATATGTCCTCCTGGCACCGCAGCTTCAGCTCCTGGCTCACGGCAGCAATGCCCTC CAAGGTCTTGACTTTGGCGAGCTCCTCTCGAAGCTGCTGATGTACCTGCAGCGTGTGGTG CCACAGCTTGAAGAGGTGGGCCCGGACGTAGGACAGGGGGCAGGGGTGCTGCCGCACGAG GTCCAGGTACTCCTCGGCCAGCTCCCACACGGCAGGGCTGCGGCCCTCGAACAGAGCGGG GTTGTGCAGGTGTCCCTCTGCACTCATGACCCCCTGCACCCCCGTGTCCTGGAGGCAGCG CTCCACGTCCCGCAGGCACTGGATGTTGCCGTTGGCAAACACGGGAATGGCCACCGCCTT CCGCACCGCCTTGATGTGCTCCCAGGACGCCGCGCCCGACAGGGGCCCCTTCTGCTCCTT GGTGCGCCCGTGCACGGTCAGCAGCTGGCAGCCAGCCTTCTCCAGCATCTGGGCGTATCT CACCGTCTTGTCGATCTCGGGGAAGACACGGATCTTGCACGTGACGGGGACAGAGAGTTT CTCGTGGGCCAGCAGAATCATCCTCCGCAGCAGGTCCCACTCCTCCTGCAGGAAGGCGCC GTAGTGGCCTCGCTTGGCGATCATCTGCGGGCAGCCCAGGTTCAGGTCGACGGCATCACA GTAATCCTGTGCCAGGAGAGCCGCCTGGACAAACACCTCTGGGTCGTTGGCGCAGAACTG CACGATGAGGGGCCGGTCCTCGGGGCACGCTTCACAGTACAGGTTCTCTTTGCGGTAGTT GGCATCGCGGACGAAGACCTGGGCGTGCAGCATGGGTGTGTAGCACAGCTGGGCGCCGTG CCGGCGGCTCAGCAACCTCCAGGCCAGCTCGCTCTGGTCCACCATGGGGGCCACCACGTG GCGGGCCCCCCCCAGGGTGCGGCTCCAGAACTCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTCGGCTTTGAAGTGATTTATTGTTCACTGGGGACACAGGCGGGCTGGAGCCC AGGACAGGTCCGGCTGGGGAGCCCGCTCCCCGGTGTGGCCTCGCCGAGCCCACGGCCTGG GCCGAGGGGAAGAGCGGCTTGTCCTTCCGCGTGAAGGAGCAGGAGGTTCCCTGAGAAAAG GCGTTTCCTTAATGGGCACGAGTCCAGGCGTCGGCGGGCAGGCCTGGAGCCTGGGGCTGC AGGTGCCCCTCAGGTCAGGGCGCTGCCCACGGCCTCGGGGAGGCCACCCAGCGGCGCTGG CCCCGCCTGCGGAGGTTCCTGCGGCCGCAGCTGGGCCCCCTTCCAGGCCAGAGACTTCTC CAGTTTGGTTTTAAAAAGTAGCCCGTGACCTGGGCAGTCGGCGGTCTCCCTGAAAGCGCG CTTCTTGCAGCAGCCCCGGCACAGGTTAAACACACACCGGTTGCCCTTTGGGTTCCCACA TTGATCACACTTCGCGTATTTTGGTTTCAGCGAGGGGTCAAAGGTCTTGTGTGGGTTCCT CAGCTGCTTCTTCTGCTTGTTCTTGGACAGGGCCTCTGTGCTGCCCTCCTCCTCCAGGGC CCGCTTGCTGCGGGCACCCCCGTTCTCCTTGCTCCCCTCCTGGGGCCCTGGCCGGAAGTA AGGCTGGCAGATCCAGTGGAAGAAAGGCAGGCCGCCCGAGGGTTTCTCTCCCTCCTTCTG CCTGGATATGTCCTCCTGGCACCGCAGCTTCAGCTCCTGGCTCACGGCAGCAATGCCCTC CAAGGTCTTGACTTTGGCGAGCTCCTCTCGAAGCTGCTGATGTACCTGCAGCGTGTGGTG CCACAGCTTGAAGAGGTGGGCCCGGACGTAGGACAGGGGGCAGGGGTGCTGCCGCACGAG GTCCAGGTACTCCTCGGCCAGCTCCCACACGGCAGGGCTGCGGCCCTCGAACAGAGCGGG GTTGTGCAGGTGTCCCTCTGCACTCATGACCCCCTGCACCCCCGTGTCCTGGAGGCAGCG CTCCACGTCCCGCAGGCACTGGATGTTGCCGTTGGCAAACACGGGAATGGCCACCGCCTT CCGCACCGCCTTGATGTGCTCCCAGGACGCCGCGCCCGACAGGGGCCCCTTCTGCTCCTT GGTGCGCCCGTGCACGGTCAGCAGCTGGCAGCCAGCCTTCTCCAGCATCTGGGCGTATCT CACCGTCTTGTCGATCTCGGGGAAGACACGGATCTTGCACGTGACGGGGACAGAGAGTTT CTCGTGGGCCAGCAGAATCATCCTCCGCAGCAGGTCCCACTCCTCCTGCAGGAAGGCGCC GTAGTGGCCTCGCTTGGCGATCATCTGCGGGCAGCCCAGGTTCAGGTCGACGGCATCACA GTAATCCTGTGCCAGGAGAGCCGCCTGGACAAACACCTCTGGGTCGTTGGCGCAGAACTG CACGATGAGGGGCCGGTCCTCGGGGCACGCTTCACAGTACAGGTTCTCTTTGCGGTAGTT GGCATCGCGGACGAAGACCTGGGCGTGCAGCATGGGTGTGTAGCACAGCTGGGCGCCGTG CCGGCGGCTCAGCAACCTCCAGGCCAGCTCGCTCTGGTCCACCATGGGGGCCACCACGTG GCGGGCCCCCCCCAGGGTGCGGCTCCAGAACTCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 274-393, + strand, RNAz p=0.982473 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 274-393, + strand, RNAz p=0.982473 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 13-393, gnl|bosTau2|chr19 (45610218-45610606) | |
| 13-393, gnl|Hg17|chr17 (77609048-77609423) | |
| 13-393, gnl|Mm7|chr11 (120898251-120898608) | |
| 506-647, gnl|bosTau2|chr19 (45611529-45611673) | |
| 506-647, gnl|canFam2|chr9 (3260496-3260398) | |
| 506-647, gnl|danRer3|chrUn (100007220-100007324) | |
| 506-647, gnl|dasNov1|scaffold_25617 (6963-6872) | |
| 506-647, gnl|echTel1|scaffold_295480 (3847-3946) | |
| 506-647, gnl|fr1|chrUn (143625349-143625245) | |
| 506-647, gnl|galGal2|chr18 (4760833-4760722) | |
| 506-647, gnl|hg17|chr17 (77611102-77611206) | |
| 506-647, gnl|Hg17|chr17 (77611115-77611259) | |
| 506-647, gnl|mm7|chr11 (120900239-120900343) | |
| 506-647, gnl|Mm7|chr11 (120900252-120900396) | |
| 506-647, gnl|monDom2|scaffold_18 (15576387-15576492) | |
| 506-647, gnl|panTro1|chr19_random (56627453-56627349) | |
| 506-647, gnl|rheMac2|chr16 (77525787-77525891) | |
| 506-647, gnl|tetNig1|chrUn_random (37819168-37819258) | |
| 506-647, gnl|xenTro1|scaffold_413 (872552-872653) | |
| 832-982, gnl|bosTau2|chr19 (45612621-45612771) | |
| 832-982, gnl|canFam2|chr9 (3259499-3259328) | |
| 832-982, gnl|danRer3|chrUn (100008770-100008938) | |
| 832-982, gnl|echTel1|scaffold_295480 (4675-4840) | |
| 832-982, gnl|fr1|chrUn (143623173-143623018) | |
| 832-982, gnl|galGal2|chr18 (4759099-4758938) | |
| 832-982, gnl|hg17|chr17 (77612353-77612524) | |
| 832-982, gnl|Hg17|chr17 (77612373-77612523) | |
| 832-982, gnl|loxAfr1|scaffold_141718 (595-415) | |
| 832-982, gnl|mm7|chr11 (120901380-120901548) | |
| 832-982, gnl|Mm7|chr11 (120901399-120901548) | |
| 832-982, gnl|monDom2|scaffold_18 (15578172-15578343) | |
| 832-982, gnl|panTro1|chr19_random (56626075-56625904) | |
| 832-982, gnl|rheMac2|chr16 (77527042-77527213) | |
| 832-982, gnl|tetNig1|chrUn_random (37820256-37820411) | |
| 832-982, gnl|xenTro1|scaffold_413 (874542-874695) | |
| 1153-1254, gnl|bosTau2|chr19 (45613842-45613943) | |
| 1153-1254, gnl|canFam2|chr9 (3258315-3258204) | |
| 1153-1254, gnl|danRer3|chrUn (100010606-100010699) | |
| 1153-1254, gnl|echTel1|scaffold_295480 (5361-5467) | |
| 1153-1254, gnl|fr1|chrUn (143622465-143622373) | |
| 1153-1254, gnl|galGal2|chr18 (4757157-4757038) | |
| 1153-1254, gnl|hg17|chr17 (77614002-77614116) | |
| 1153-1254, gnl|Hg17|chr17 (77614016-77614115) | |
| 1153-1254, gnl|loxAfr1|scaffold_104593 (8031-8125) | |
| 1153-1254, gnl|mm7|chr11 (120902855-120902969) | |
| 1153-1254, gnl|Mm7|chr11 (120902869-120902968) | |
| 1153-1254, gnl|monDom2|scaffold_18 (15588851-15588945) | |
| 1153-1254, gnl|panTro1|chr19_random (56624407-56624293) | |
| 1153-1254, gnl|rheMac2|chr16 (77529113-77529227) | |
| 1153-1254, gnl|tetNig1|chrUn_random (37820889-37820983) | |
| 1153-1254, gnl|xenTro1|scaffold_413 (876122-876216) | |
| 1431-1656, gnl|bosTau2|chr19 (45615218-45615443) | |
| 1431-1656, gnl|Hg17|chr17 (77615981-77616206) | |
| 1431-1656, gnl|Mm7|chr11 (120904499-120904740) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-393, gnl|bosTau2|chr19 (45610218-45610606) | |
| 13-393, gnl|Hg17|chr17 (77609048-77609423) | |
| 13-393, gnl|Mm7|chr11 (120898251-120898608) | |
| 506-647, gnl|bosTau2|chr19 (45611529-45611673) | |
| 506-647, gnl|canFam2|chr9 (3260496-3260398) | |
| 506-647, gnl|danRer3|chrUn (100007220-100007324) | |
| 506-647, gnl|dasNov1|scaffold_25617 (6963-6872) | |
| 506-647, gnl|echTel1|scaffold_295480 (3847-3946) | |
| 506-647, gnl|fr1|chrUn (143625349-143625245) | |
| 506-647, gnl|galGal2|chr18 (4760833-4760722) | |
| 506-647, gnl|hg17|chr17 (77611102-77611206) | |
| 506-647, gnl|Hg17|chr17 (77611115-77611259) | |
| 506-647, gnl|mm7|chr11 (120900239-120900343) | |
| 506-647, gnl|Mm7|chr11 (120900252-120900396) | |
| 506-647, gnl|monDom2|scaffold_18 (15576387-15576492) | |
| 506-647, gnl|panTro1|chr19_random (56627453-56627349) | |
| 506-647, gnl|rheMac2|chr16 (77525787-77525891) | |
| 506-647, gnl|tetNig1|chrUn_random (37819168-37819258) | |
| 506-647, gnl|xenTro1|scaffold_413 (872552-872653) | |
| 832-982, gnl|bosTau2|chr19 (45612621-45612771) | |
| 832-982, gnl|canFam2|chr9 (3259499-3259328) | |
| 832-982, gnl|danRer3|chrUn (100008770-100008938) | |
| 832-982, gnl|echTel1|scaffold_295480 (4675-4840) | |
| 832-982, gnl|fr1|chrUn (143623173-143623018) | |
| 832-982, gnl|galGal2|chr18 (4759099-4758938) | |
| 832-982, gnl|hg17|chr17 (77612353-77612524) | |
| 832-982, gnl|Hg17|chr17 (77612373-77612523) | |
| 832-982, gnl|loxAfr1|scaffold_141718 (595-415) | |
| 832-982, gnl|mm7|chr11 (120901380-120901548) | |
| 832-982, gnl|Mm7|chr11 (120901399-120901548) | |
| 832-982, gnl|monDom2|scaffold_18 (15578172-15578343) | |
| 832-982, gnl|panTro1|chr19_random (56626075-56625904) | |
| 832-982, gnl|rheMac2|chr16 (77527042-77527213) | |
| 832-982, gnl|tetNig1|chrUn_random (37820256-37820411) | |
| 832-982, gnl|xenTro1|scaffold_413 (874542-874695) | |
| 1153-1254, gnl|bosTau2|chr19 (45613842-45613943) | |
| 1153-1254, gnl|canFam2|chr9 (3258315-3258204) | |
| 1153-1254, gnl|danRer3|chrUn (100010606-100010699) | |
| 1153-1254, gnl|echTel1|scaffold_295480 (5361-5467) | |
| 1153-1254, gnl|fr1|chrUn (143622465-143622373) | |
| 1153-1254, gnl|galGal2|chr18 (4757157-4757038) | |
| 1153-1254, gnl|hg17|chr17 (77614002-77614116) | |
| 1153-1254, gnl|Hg17|chr17 (77614016-77614115) | |
| 1153-1254, gnl|loxAfr1|scaffold_104593 (8031-8125) | |
| 1153-1254, gnl|mm7|chr11 (120902855-120902969) | |
| 1153-1254, gnl|Mm7|chr11 (120902869-120902968) | |
| 1153-1254, gnl|monDom2|scaffold_18 (15588851-15588945) | |
| 1153-1254, gnl|panTro1|chr19_random (56624407-56624293) | |
| 1153-1254, gnl|rheMac2|chr16 (77529113-77529227) | |
| 1153-1254, gnl|tetNig1|chrUn_random (37820889-37820983) | |
| 1153-1254, gnl|xenTro1|scaffold_413 (876122-876216) | |
| 1431-1656, gnl|bosTau2|chr19 (45615218-45615443) | |
| 1431-1656, gnl|Hg17|chr17 (77615981-77616206) | |
| 1431-1656, gnl|Mm7|chr11 (120904499-120904740) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nje (0.33184) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| med (0.232504) | |
| jca (0.22792) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nje (0.33184) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| med (0.232504) | |
| jca (0.22792) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jej (0.0989218) |